Changes

Summary

1. making branch for 0.9.x datamanager library (details)
2. iMove schema files to xsd directory, and images to img directory. (details)
3. Refactor build to switch to 2.2.0 version. (details)
4. Change usage of personnel to individuals (details)
5. Fix a minor typo (details)
6. Add ORCID to the examples for userid/directory (details)
7. Removing unneeded perl script for stripping annotations. (details)
8. Move removeAnnotation.xsl into the style directory. (details)
9. Converted members.xml to Markdown format (members.md). (details)
10. First draft of an eml-semantics module. (details)
11. Fix markdown syntax on members table. (details)
12. Remove extraneous attributes, and unneeded `choice`. (details)
13. Added `annotation` fields for attribute, EntityGroup, and ResourceGroup. (details)
14. Added annotation fields to example document. (details)
15. Rename `gradient` to `grad`s. (details)
16. Added 'unknown' to the maintainence frequency list to fix spelling (details)
17. Added modern packageId examples (DOI, UUID) to docs. (details)
18. Add notice about release statis of 2.2.0. (details)
19. Added `award` field. (details)
20. Updated documentation for award fields. (details)
21. Switch sample doc to use 2.2.0 namespace. (details)
22. Add 'award' element as part of sample.xml as an example. (details)
23. Adjusted documentation on the 'purpose' field to indicate that it is (details)
24. renamed citation to usageCitation to reflect comments in issue #259. (details)
25. Fix outdated references to SVN and listserv (details)
26. Fix XML syntax errors in internationalization example (details)
27. Fix invalid lang codes in internationalization example (details)
28. Added task board to README. (details)
29. Simple travis build (details)
30. Switch travis to language generic to avoid ruby build. (details)
31. Travis badge (details)
32. Standardize protocol namespace to 'pro'. (details)
33. Modified build to allow building docs offline. (details)
34. Add new elements for propertyURI and propertyLabel. (details)
35. Added EML semantics example document. (details)
36. Added more complete annotation example. (details)
37. Improved documentation for personnel element. (details)
38. Add a local copy of xml.xsd. (details)
39. Use EML-style camel case field names for `AwardType`. (details)
40. Fixed spelling in members file. (details)
41. Modified docbook and test resources to validate and pass tests. (details)
42. Update eml-party test example with ORCID. (details)
43. Initial pass at introduction, acknowledgements, and gettingStarted (details)
44. Rebuilt eml.jar for 2.2.0 support. (details)
45. Drafted new fields for data paper support. (details)
46. Make the `award` element valid in the sample EML document. (details)
47. Add the semantics module to the doc generator. (details)
48. Add link to GFM in example markdown. (details)
49. Improve markdown documentation. (details)
50. Check if the ant tests work in Travis. (details)
51. added an abstract containing a sample equation eml-data-paper.xml (details)
52. changed replaced -> augmented (details)
53. Changed `propertyURI` and label to optional. (details)
54. Add machine-readable license element. (details)
55. Rename license element to avoid conflict. (details)
56. Fix typos in docs. (details)
57. 1) stmml.xsd with two new attributes for a unit: deprecatedInFavorOf and (details)
58. Revert to eml-unitDictionary.xml to (details)
59. add deprecatedInFavorOf information (details)
60. Further fleshed out sections in example data paper. (details)
61. Added support for new citation formats, fields, and inline citations. (details)
62. Fix validation error on schema location for data paper sample doc. (details)
63. Check that Travis build fails when tests fail or error. (details)
64. Fix data paper sample so that it validates. (details)
65. Add new units (details)
66. udunitSynonym for all units (details)
67. Test file with all 2.1.1 units (details)
68. Schema location change (details)
69. set the namespace for stmml-1.2 in the root element. added a missing (details)
70. fixes to all-units test (details)
71. Ensure CitationListType has at least one citation. (details)
72. Changed `dependency` to use a ComplexType. (details)
73. Rename test file. (details)
74. Completed fields for semantic annotation. (details)
75. Update namespace of etst cittion docs. (details)
76. added units for issues #140, #115. renamed unitTypes for issues #285, (details)
77. parentSI units are all in preferred spelling (details)
78. Added to taxonomicClassificationType: an id on the (details)
79. set taxonId@provider to anyURI. shortened examples and documentation (details)
80. added units from issues #140, #151, corrected a few copy-paste errors. (details)
81. unitTypeDefintions file updated with unit names from unitDictionary.xml (details)
82. added example with new taxonId element, per issue #141 (details)
83. taxonCov documentation fixed for species binomials, issue #250 (details)
84. dateTime docs, per issue #268: updated examples, added notes on ISO (details)
85. documentation: added note about species binomials. added examples to (details)
86. Ignore .DS_Store files. (details)
87. Reformat buildDependency.xsl for readability and indentation. (details)
88. Fix dependency tree generation using new file locations. (details)
89. Experiment with moving EML documentation into markdown files in docs. (details)
90. Test using markdown for documentation. (details)
91. Set theme jekyll-theme-slate (details)
92. Remove docbook ancillary docs files, which are now in markdown format. (details)
93. Move documentation into docs directory. (details)
94. Update rules language and formatting. (details)
95. Fix location of CSS file in new directory layout. (details)
96. Moved references handling instructions to markdown format in docs. (details)
97. Ignore jekyll _site directory. (details)
98. add EML 2.2 changes document (details)
99. Revise what's new after comparing against mob's ASM slides (details)
100. Restructured README to present citation format. (details)
101. Added Mitchell. (details)
102. updated namespace at top level. noticed that some test files have stmml (details)
103. stmml namespace updated in additionalMetadata also (details)
104. adding a template to move appinfo to documentation (details)
105. disambiguate literatureCited example (details)
106. QUote elements to avoid build problems in html output. (details)
107. Fix link to FLED to point at archive.org copy. (details)
108. Initial structure for a Bookdown version of the EML spec. (details)
109. Added bookdown configuration for citations. (details)
110. Initial conversion of spec to markdown. (details)
111. Fix typo in abstract. (details)
112. Reformat list. (details)
113. Add semantics module overview section. (details)
114. Removed module description text from schemas. (details)
115. Removed specification text from xsl. (details)
116. Remove unneeded build stages now that docs are in markdown. (details)
117. Remove docbook from the build and tests. (details)
118. Remove accidentally committed config file. (details)
119. adding eml-literature file to document new citation types (details)
120. Clarified documentation on the packaeId attribute. (details)
121. Remove erroneous default value for system attributes. (details)
122. Rewrote validation section to be much clearer. (details)
123. Rewrote validity and features sections, and renamed files. (details)
124. Changed exmaples to use doi identifiers for clarity. (details)
125. Rename validation chapter. (details)
126. Rename chapters more consistently. (details)
127. Update TOC links. (details)
128. Incorporate eml-literature module into the eml-module.md. (details)
129. Reorganize modules section into 4 chapters plus ancillary material. (details)
130. Add Getting Started section. (details)
131. replace referencesList with referencesHash (details)
132. Spell Timothy Whiteaker correctly (details)
133. add MeasurementType annotations to percent cover and biomass attributes (details)
134. minor grammatical edits to eml-validation-refs (details)
135. Fix filename typo in schema docs. (details)
136. Changed annotation example to not reuse the packageId. (details)
137. adding script to prep xsd files for generating documentation in Oxygen (details)
138. adding the transformed files in a tmp dir (details)
139. Update tests to detect invalid files. (details)
140. Added test files for annotations. (details)
141. First thoughts on an alternative validator for EML-specific rules. (details)
142. Make validate() public. (details)
143. Add packageId to the list of identifiers to be checked. (details)
144. Start a new EMLValidator class to replace EMLParser. (details)
145. Added new jar for the EMLValidator. (details)
146. initial commit (details)
147. add examples to /eml/annotations and /eml/additionalMetadata (details)
148. add code sample to attribute annotation example (details)
149. add example dataset annotation, fixed formatting (details)
150. add draft of attribute annotation text (details)
151. add documentation to attribute annotation section (details)
152. edit headings, and attribute, entity, and introduction sections (details)
153. describe containsMeasurementsOfType object property (details)
154. edit attribute annotation text (details)
155. add example for entity annotation (details)
156. add entity-level annotation text (details)
157. edit entity and attribute annotation sections (details)
158. edit dataset section (details)
159. add text to dataset section (details)
160. add text to /eml/annotations section (details)
161. add explanation of examples to /eml/annotations (details)
162. Add the annotations primer to the gitbook. (details)
163. add text to additionalMetadata section (details)
164. add text to the additionalMetadata section (details)
165. update text in the /eml/additionalMetadata section (details)
166. add introduction to primer (details)
167. add text to introduction (details)
168. reorganize introduction (details)
169. update semantics in EML 2.2.0 section (details)
170. update headings and text (details)
171. reorganize semantic annotations primer (details)
172. update semantic annotation primer (details)
173. updated semantic annotations primer (details)
174. edited semantic annotations primer text (details)
175. update examples (details)
176. update generic examples (details)
177. edit semantic annotations primer (details)
178. update examples and text (details)
179. add label information (details)
180. Add label information (details)
181. update semantic annotations primer (details)
182. edited examples and text (details)
183. edit annotation pattern examples (details)
184. edit example explanations (details)
185. add references to data property (details)
186. add specific annotation example (details)
187. edit dataset annotations section (details)
188. proofreading edits (details)
189. clarify explanations about subjects and ID values (details)
190. edit example text (details)
191. edit and add more examples (details)
192. adding a script to build schema documentation using Oxygen (details)
193. adding script to build documentation (details)
194. edit code blocks highlighting (details)
195. clarify use of additionalMetadata element (details)
196. edit entity annotation section (details)
197. add relative links (details)
198. change dataset to top-level resource (details)
199. edit headings and top-level resources section (details)
200. edit top-level resource section (details)
201. edit entity-level annotation section (details)
202. update annotations text (details)
203. edit attribute annotation text, remove pattern (details)
204. edit annotations element section (details)
205. edit additionalMetadata section (details)
206. clean up text (details)
207. edit introduction (details)
208. edit annotations section (details)
209. in example, ref to ITIS is the IRI (URL) (details)
210. Fix minor issues with Oxygen doc build script (details)
211. examples for taxonId are URIs (details)
212. Update schema diagrams for 2.2.0 (details)
213. updated unit enumeration (details)
214. Add angle units to unit enumeration so validation works. (details)
215. First pass at new EML Validator. (details)
216. Reformat and document EMLValidator. (details)
217. Moved EML module files to new subdirectory. (details)
218. Remove whitespace in describes that caused validation error. (details)
219. Fix XPath in validator to properly access all describes fields. (details)
220. Reformat Servlet for consistency. (details)
221. Got rid of EMLParser, replaced by EMLValidator. (details)
222. Added getErrors() function to EMLValidator to return full lisst of (details)
223. Refactored EMLParserServlet to use EMLValidator now. (details)
224. Update travis with new location of sample file. (details)
225. Restore the EMLParser, exceptions, and tests. (details)
226. Clean up dead code and make tests work. (details)
227. Reformat parser code for consistency with NCEAS style. (details)
228. Begin refactoring EMLParser constructors. (details)
229. Refactor EMLParsser to use EMLValidator. (details)
230. Switch EMLValidator to using File param in constructor. (details)
231. Add new EMLValidator constructor to work on String inputs. (details)
232. When parsing a String using EMLParser, delegate to EMLValidator. (details)
233. Deprecate EMLParser, use EMLValidator instead. (details)
234. Added 2.2.0 to the namespaces config variable. (details)
235. Add env to build for 2.2.0. (details)
236. re-organized some text on primer: moved highights for each annot (details)
237. edit text and formatting (details)
238. edited section titles (details)
239. Add the dataone maven repository. Change the utilities version from (details)
240. Change the version of this project from 0.9.1-snapshot to 0.9.1. (details)
241. added examples of what-not-to-do and logical consistency (details)
242. adding example graphs and refs (details)
243. headings have consistent levels; added more caveats (details)
244. finished the table of triple components (details)
245. paragraph describing what an RDF graph is (details)
246. ok, had to fix spacing around pngs (details)
247. fixed typos, minor format changes (details)
248. add RDF/XML examples (details)
249. fixed typo and formatting (details)
250. add terms to glossary (details)
251. add URL vs URI information (details)
252. fixed RDF examples (details)
253. updated primer, but Steven had also made revs (details)
254. added the glossary terms again, fixed typo (details)
255. fixed RDF examples (details)
256. fixed formatting (details)
257. some further revs to intro section (details)
258. fixed example JRN URL to resolve more usefully (details)
259. fixed JRN dataset URL again... (details)
260. small fixes (details)
261. changed predicate URI in first example (details)
262. set subject (a jrn dataset) to pasta id. (details)
263. added link to annotation primer (details)
264. added @cboettig's ref on tidy and R (details)
265. added more detail to the basic triple example (details)
266. small revisions to intro wording (details)
267. minor edits (details)
268. condensed annotation explantations (details)
269. edit eml/annotations section (details)
270. edit eml/additionalMetadata section (details)
271. removed semi-colons (details)
272. try commit after Chong commits (details)
273. grammar fix (details)
274. fixed URI to resolve (details)
275. removed namespace prefix (details)
276. grammar (details)
277. grammar (details)
278. clarifying object property is a predicate (details)
279. updated subject URI in initial example (details)
280. changed eml/annotations example (details)
281. added comments to intro (details)
282. minor order change (details)
283. add parens (details)
284. introduced resource/property/value terms in intro (details)
285. added terse note about JSON-LD vis-a-vis RDF (details)
286. changed Example 4 (details)
287. changed Examples 1 and 2, fixed typos (details)
288. edit Logical Consistency section (details)
289. edit RDF graphs section (details)
290. edit RDF graphs section (details)
291. fixed typos (details)
292. removed table mapping triple to EML (details)
293. minor edits to the intro (details)
294. minor edits (details)
295. shortened intro (details)
296. minor changes (details)
297. mark's edit (details)
298. added small explanation about OWL (details)
299. testing a footnote (details)
300. footnote, maybe (details)
301. added a group of questions to the FAQ. all pertain to the semantics (details)
302. Update README. (details)
303. Fix validation error due to duplicate id. (details)
304. Add the class fields language, abstract and keywords. (details)
305. Add the code to parse and store keywords, abstract and language. (details)
306. Add test code for new fields. (details)
307. Bump the version to 0.9.1 (details)
308. Add the code to parse the userId in the party element. (details)
309. Add the publisher and pubDate to the parser. (details)
310. Bump the version to 0.9.2. (details)
311. Fixed a typo on the word "abstract". The abstract is a keyword on the (details)
312. reorganized major sections. TO DO: links from text to appendix (details)
313. moved asterisks in links (details)
314. moved anchor tags to above heading (details)
315. moved from some more anchor tags. (details)
316. cross-links between examples and their rdf graph (details)
317. more cross refs (details)
318. moved rdf for example 3 to the correct place. (details)
319. extra asterisk removed (details)
320. graph for example 3 lowered in hierarchy (details)
321. a few leading spaces removed. (details)
322. broke organization para (details)
323. removed subheaders in intro (details)
324. add to organization para (details)
325. deleted extra glossary ref (details)
326. links to example rdf in logical consistency sect. (details)
327. checking for logical consistency section (details)
328. turned simplest triple into a code block (details)
329. Fix typos in README. (details)
330. added Q:A answers about what is: "dereferencing", URI vs URL, and SKOS (details)
331. Answered Q:A section about SKOS, RDFS, and an example using rdfs:label (details)
332. answered questions about interpreting an RDF Graph, and if tools are (details)
333. fine-tuned text on answer to "what does the RDF look like?" (details)
334. small grammatical fix (details)
335. removed extra newline and parentheses in intro (details)
336. added comments (details)
337. added comment and fixed misspelling (details)
338. expanded acronyms (details)
339. updated faq to use a schema.org "predicate" (details)
340. Clarify use of resource titles and translations (details)
341. Add support for id, system, and scope attribute on annotation elements (details)
342. small addition to dereferencing text (details)
343. small rewording about diff among URI/URL/URN (details)
344. a few more minor grammatical edits (details)
345. update contributors list (details)
346. update citation (details)
347. added simpler para 1; blended in para 2 (details)
348. Update eml-semantic-annotations-primer.md (details)
349. Update eml-semantic-annotations-primer.md (details)
350. Update eml-semantic-annotations-primer.md (details)
351. Fix whitespace problems with markdown headings in semantics primer. (details)
352. task 5 done. started on 4 (example text) (details)
353. few typos and whitespace (details)
354. round out contact info for searl (details)
355. Ignore project config files in git. (details)
356. Update EML schemas to use new https-based namespace. (details)
357. Add Oxygen docs to book and tweak the book build (details)
358. Fix an issue with my approach to making index.html (details)
359. restructured text for examples 2 and 3 (details)
360. restructured text for examples 4 and 5 (details)
361. entry for each of 8 vocabs in the examples. (details)
362. fix typos and links (details)
363. edit intro (details)
364. fix links in intro (details)
365. edit file name (details)
366. edit 'Organization of this document' section (details)
367. edit Semantic Annotations in EML 2.2.0 section (details)
368. edit top-level resource section (details)
369. edit example 3 (details)
370. edit example 4 (details)
371. edit example 5 (details)
372. edit "semantic triples" and "URIs" section (details)
373. edit URIs and RDF Graphs sections (details)
374. put glossary terms in alphabetical order (details)
375. edit glossary and example vocabs (details)
376. edit example vocabs (details)
377. add the FAQs from eml-faq (details)
378. remove semantics content (details)
379. fix Q's format and wording (details)
380. edit FAQ, add link to FAQ (details)
381. edit FAQ (details)
382. add FAQ to doc organization; add vocab info (details)
383. add definition of glossary terms (details)
384. Update eml-semantic-annotation-primer.md (details)
385. update semantic annotation primer file name (details)
386. update document organization section; fix typos (details)
387. linked text to FAQs. added one more FAQ (re measurements). added (details)
388. edit URIs section (details)
389. proofing and small revisions-- still working on this. (details)
390. continuing with revisions to Sem Primer (details)
391. saving changes thru line 100 (details)
392. edits up to line 200 (details)
393. edits up to line 267 (details)
394. final changes for today (details)
395. Try to fix Travis build by switching to Java to get ant installed. (details)
396. Add ant to APT install in Travis. (details)
397. Add ant-optional to the Travis build for JUnit support. (details)
398. Have JUnit prinnt test log to console for easier debugging. (details)
399. Increase memory to see if that is the StackOverflow error. (details)
400. Try bionnic to get a newer version of ant than 1.96. (details)
401. Try snaps rather than apt under bionic for package installs. (details)
402. Switch to using apt install directly, and skip the maven build. (details)
403. Try updating the apt sources before the install. (details)
404. Switch back to xenial. (details)
405. FIx target typo to 'before_install'. (details)
406. Annd switch back to bionic now that apt is installing properly. (details)
407. Add custom downloaded version of ant (1.10.6) instead of what comes with (details)
408. Fix path to 1.10.6 download. (details)
409. CHeck if ant exists, and if not then download it. (details)
410. Add env var for Ant version to Travis. (details)
411. Temporarily disable cache. (details)
412. DOwnload Ant if the directory does NOT exist. (details)
413. Try a larger stack size. (details)
414. Cache busted? (details)
415. Upgrade xerces and xalan to see if that fixes the StackOverflowErrors. (details)
416. Pare back travis now that the xerces upgrade fixed the build. (details)
417. modifications throughout, now up to line 383, "URI (details)
418. modifications throughout, now up to 472 (details)
419. up to 644 (details)
420. finished full pass-thru edit of semantic annotation primer (details)
421. minor edits to intro (details)
422. minor edits to intro (details)
423. superficial edits (details)
424. more superficial edits (details)
425. yet more superficial edits (details)
426. updates to text, in light of warnings about `id`s in EML need to be (details)
427. update Examples 1 and 4 (details)
428. update examples with Eric Seabloom's info (details)
429. make examples consistent (details)
430. Force copy the index.html even if it exists. (details)
431. Switch to using "dist" as the subdirectory for the built site and (details)
432. Initial dist subtree commit (details)
433. Add shell script for deploying the built site. (details)
434. Move dist directory to top level. (details)
435. Remove tmp directory from git tree. (details)
436. Ignore the tmp dir in git. (details)
437. Build schema docs directly into dist directory. (details)
438. No longer need to copy the schema docs. (details)
439. Deploy from the top level dist dir. (details)
440. initial edits to glossary and FAQ. added glossary entries for jsonld and (details)
441. Reformat for proper indentation. (details)
442. Fix 2.2.0 namespace and add examples. (details)
443. Regenerated schema docs with proper ns, and added to book. (details)
444. Introduction only: ids in EML with link to new FAQ. added short section (details)
445. replaced the extra paras after examples 1-3 with place holders to a FAQ (details)
446. typos only (details)
447. replaced people graph, correct person (details)
448. Update 2.2.0 namespace in additional files. (details)
449. editing annotation section to improve readability (details)
450. set to false: detailsSource, detailsUsedBy, set to true: (details)
451. Update schema doc html files with new configuration. (details)
452. section headers and text for examples 3 and 4, per Stevan. (details)
453. added an intro to grouped annotations per Stevan (details)
454. editing the annotations primer (details)
455. Fix spelling. (details)
456. Updated instructions to build and deploy the website. (details)
457. Renamed about file. (details)
458. Fixed book filename and commandline switch. (details)
459. Fix chapter link to file. (details)
460. Added coverage section to sample with taxonId filed for validation test. (details)
461. Updated contributors, added ORCIDs, cleaned README links. (details)
462. Updated ORCID links. (details)
463. Fix nav menu to remove extraneous link. (details)
464. Update validator to use new schema namespace. (details)
465. Edit the EML 2.2.0 changes document. (details)
466. Updated book chapter on EML 2.2.0 changes. (details)
467. Fix instructions for validation script. (details)
468. Updated release notes with major features and bug listings. (details)
469. Add shell script for getting the current list of GitHub issues for a (details)
470. Fix bullet list formatting in sem primer. (details)
471. fix glossary in primer (details)
472. elevated the level glossary and list of vocabs. removed extra notes (details)
473. rm the toc since bookdown makes one. adapted paragrath on organization (details)
474. orphan text, extra linefeeds removed. (details)
475. small changes to wording in appendix (details)
476. moved FAQs to above appendix (details)
477. one more ISO example, per issue #311 (details)
478. added methods appinfo, per issue #330 (details)
479. Add new images for each module. (details)
480. Link to module images and diagrams in docs (details)
481. Link to interactive schema documentation in readme (details)
482. Rearrange chapters to have all modules in one chapter. (details)
483. Move schema docs out of dist/schema and into docs/schema (details)
484. Add newly generated schema images to built schema docs. (details)
485. Copy source dirs into built book for proper linking. (details)
486. Delete the contents of dist as this will now be a temporary staging (details)
487. Update site build description. (details)
488. Update the deploy script. (details)
489. Remove unneeded status outputs from deploy script. (details)
490. Add redirect config file for Netlify. (details)
491. Rewrite the URL rather than redirect. (details)
492. Streamline git clone and build for EML parser. (details)
493. Ignore the release dir in commits. (details)
494. FUrther streamline git copy for EML schemas. (details)
495. Fix emlparser servlet by adding utilities.jar. (details)
496. Fix the `dist` target to create the release files for distribution. (details)
497. Added paragraph descrining need for missing value codes and code (details)
498. Deprecated the eml-access module in the docs. (details)
499. Updated language around contribution by maintainers. (details)
500. Add a codemeta.json file and a bibtext citation. (details)
501. Update context file to use codemeta as default. (details)
502. fixed minor typos (details)
503. Fixed typos, added section on deprecating EML access. (details)
504. Make some minor copy edits (details)
505. Remove the ant target call "docs" since the build.xml doesn't have it (details)
506. Remove the duplicated methods set/getAbstract. (details)
507. Bump the version of the datamanager jar file from 0.9.2 to 1.0.0. (details)
508. New language for deprecation of access element. (details)
509. Add more markdown documentation. (details)
510. Update release target to include generated site. (details)

Commit 6c95904dd1c5c0d7ed123a6de3df1ea22f276559 by leinfelder making branch for 0.9.x datamanager library
	pom.xml (diff)
	.project
Commit 79b66ac29d5f9df62ea82f93148e95c46d2c8884 by gitcode iMove schema files to xsd directory, and images to img directory.
	eml-protocol.xsd
	xsd/eml-attribute.xsd
	img/eml-project.png
	eml-protocol.png
	xsd/eml-access.xsd
	xsd/eml-dataTable.xsd
	eml-project.xsd
	xsd/eml-spatialReference.xsd
	eml-resource.png
	xsd/eml-storedProcedure.xsd
	img/eml-dataTable.png
	xsd/eml-literature.xsd
	eml-methods.png
	xsd/eml-dataset.xsd
	eml-attribute.xsd
	xsd/eml-party.xsd
	img/eml-access.png
	img/eml-dataset.png
	eml-physical.png
	eml-software.xsd
	eml-view.png
	xsd/eml-methods.xsd
	eml.xsd
	xsd/eml-physical.xsd
	eml-view.xsd
	eml-project.png
	eml-literature.png
	img/eml-storedProcedure.png
	eml-text.xsd
	xsd/eml-constraint.xsd
	xsd/eml-entity.xsd
	eml-resource.xsd
	eml-spatialReference.png
	xsd/eml-view.xsd
	img/eml-methods.png
	img/eml-physical.png
	img/eml-attribute.png
	eml.png
	xsd/eml-protocol.xsd
	xsd/eml-unitTypeDefinitions.xsd
	eml-constraint.png
	eml-storedProcedure.png
	img/eml-protocol.png
	eml-attribute.png
	xsd/eml-documentation.xsd
	img/eml-spatialVector.png
	xsd/eml-resource.xsd
	img/eml-constraint.png
	eml-text.png
	eml-coverage.xsd
	eml-dataset.png
	eml-unitTypeDefinitions.xsd
	eml-dataTable.xsd
	xsd/eml-spatialVector.xsd
	img/eml-spatialReference.png
	xsd/eml-coverage.xsd
	img/eml-software.png
	eml-documentation.xsd
	eml-methods.xsd
	img/eml-literature.png
	eml-coverage.png
	xsd/eml-software.xsd
	stmml.xsd
	xsd/stmml.xsd
	eml-spatialRaster.xsd
	img/eml.png
	eml-dataTable.png
	img/eml-party.png
	eml-spatialReference.xsd
	img/eml-text.png
	img/eml-entity.png
	xsd/eml.xsd
	eml-physical.xsd
	eml-party.png
	eml-entity.xsd
	img/eml-coverage.png
	img/eml-resource.png
	eml-storedProcedure.xsd
	img/eml-spatialRaster.png
	eml-spatialRaster.png
	xsd/eml-spatialRaster.xsd
	xsd/eml-text.xsd
	eml-literature.xsd
	eml-access.xsd
	eml-dataset.xsd
	img/eml-view.png
	eml-access.png
	eml-physicalDistribution.png
	eml-spatialVector.png
	xsd/eml-project.xsd
	eml-party.xsd
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	eml-spatialVector.xsd
	img/eml-physicalDistribution.png
	eml-constraint.xsd
Commit ef773b33b9d2c8484e5fc8c5af49fe5f108e4016 by gitcode Refactor build to switch to 2.2.0 version. This includes fixes to docbook generation for the new xsd and img directory structures, and updatting the eml-spatialReferenceDictionary.xml to use the 2.2.0 namespace (partial fix for issu #264).
	xsd/eml-physical.xsd (diff)
	xsd/eml-coverage.xsd (diff)
	xsd/eml-project.xsd (diff)
	xsd/eml-documentation.xsd (diff)
	xsd/eml-resource.xsd (diff)
	xsd/eml-unitTypeDefinitions.xsd (diff)
	xsd/eml-dataset.xsd (diff)
	eml-spatialReferenceDictionary.xml (diff)
	xsd/eml-attribute.xsd (diff)
	xsd/eml-protocol.xsd (diff)
	xsd/eml.xsd (diff)
	build.xml (diff)
	xsd/eml-access.xsd (diff)
	xsd/eml-entity.xsd (diff)
	README.md (diff)
	xsd/eml-party.xsd (diff)
	eml-documentation.xsl (diff)
	xsd/eml-storedProcedure.xsd (diff)
	xsd/eml-text.xsd (diff)
	xsd/eml-methods.xsd (diff)
	xsd/eml-dataTable.xsd (diff)
	xsd/eml-constraint.xsd (diff)
	xsd/eml-spatialVector.xsd (diff)
	xsd/eml-software.xsd (diff)
	buildDocBook.xsl (diff)
	xsd/eml-spatialReference.xsd (diff)
	xsd/eml-spatialRaster.xsd (diff)
	xsd/eml-view.xsd (diff)
	xsd/eml-literature.xsd (diff)
	buildDependencyTable.xsl (diff)
	style/eml/eml.xsl (diff)
Commit 62b60f9f755dd118a3f20029c816c5baf52c78ce by petridish Change usage of personnel to individuals Because the word personnel connotes employment at an organization, I think a more inclusive term should be used. This is related to expanding the the document of userId/directory for web identifiers such as ORCID in #260.
	eml-party.xsd (diff)
Commit e55f8948a5d33d48038afe2de7ab1de8206f5842 by petridish Fix a minor typo
	eml-party.xsd (diff)
Commit 03f42d02767f36aa021c42104c58767d9caefde8 by petridish Add ORCID to the examples for userid/directory Addresses #260
	eml-party.xsd (diff)
Commit dedd0d0f60aedf5295cb3ff00bfff2a5d0db41f4 by gitcode Removing unneeded perl script for stripping annotations. Use the more effective XSLT instead.
	removeAnnotation.pl
Commit 746d46d6f88431ddb09a091f4a1f9e5b09043845 by gitcode Move removeAnnotation.xsl into the style directory.
	removeAnnotation.xsl
	build.xml (diff)
	style/removeAnnotation.xsl
Commit 676d5a5a29ce4398c07e2e2715905492c88062fc by gitcode Converted members.xml to Markdown format (members.md).
	index.html (diff)
	members.md
	members.xsl
	eml-faq.xml (diff)
	build.xml (diff)
	members.xml
Commit 1dacda89507c344a4e26c27b0f9d7df30b3ab21e by gitcode First draft of an eml-semantics module. Still needs to be incorporated into other elements within EML.
	xsd/eml-semantics.xsd
Commit 9179ed04ead6a77dd4603474a0a936d1c2674ade by noreply Fix markdown syntax on members table.
	members.md (diff)
Commit 2c589cee5bf595144ebec4dcd467fe2cecd67149 by gitcode Remove extraneous attributes, and unneeded `choice`. The `SemanticAnnotation` type was difined as a sequence nested inside of a choice, which was not needed. See issue #25.
	xsd/eml-semantics.xsd (diff)
Commit 8376bd10aa6865ea92ff16441c2e06173c7c7e56 by gitcode Added `annotation` fields for attribute, EntityGroup, and ResourceGroup. Continuing work on issue #25, added in fields of type sem:SemanticAnnotation in three key schemas.
	xsd/eml-entity.xsd (diff)
	xsd/eml-semantics.xsd (diff)
	xsd/eml-resource.xsd (diff)
	xsd/eml-attribute.xsd (diff)
Commit 8c0b3455c3442fe48d7b24cc673411b3fd21d8bb by gitcode Added annotation fields to example document. Continuing work on issue #25, this commit now allows the new annotation fields to be demonstrated. The eml-sample.xml document validates using xerces.
	src/test/resources/eml-sample.xml (diff)
Commit be79f1a97e805b6585ae0c210e017b12bd0dac19 by gitcode Rename `gradient` to `grad`s. This is to follow the change in unit names that was made years ago, and has been a latent bug in the file since then.  This fix closes #264.
	eml-spatialReferenceDictionary.xml (diff)
Commit e738422cdd78caf3d8e8b253c94f75021fe07889 by gitcode Added 'unknown' to the maintainence frequency list to fix spelling error. The original misspelled value was kept for compatibility.  This will close issue #267.
	xsd/eml-dataset.xsd (diff)
Commit 393f859214f80cd279be3ef54398783ae13958ca by gitcode Added modern packageId examples (DOI, UUID) to docs.
	xsd/eml.xsd (diff)
Commit ac5d9d2f6ed3b74903a9fbc785a4f441b2be8828 by gitcode Add notice about release statis of 2.2.0.
	README.md (diff)
Commit 772a0964eb62c9fd2baf5518777395a013b6dca3 by gitcode Added `award` field. Added first version of a new `award` field to the eml-project schema to add info that can be used to reference funding information for the projet.  This provides the first implementation of the `award` field, including the award title, identifier, and open funder registry identifier. These proposed additions are partial implementations for issue #266.
	other/registry.rdf
	xsd/eml-project.xsd (diff)
Commit a31aec1f213aba9776dc3033552aaa7a8a46c659 by gitcode Updated documentation for award fields.
	xsd/eml-project.xsd (diff)
Commit 751e1869df64aa5e7305c15314d806e99245eb58 by gitcode Switch sample doc to use 2.2.0 namespace. Document validates.
	lib/sample/eml-sample.xml (diff)
Commit 5ce01c94ed5298f6fee8b7f4beb4e33c6b7c1ea8 by gitcode Add 'award' element as part of sample.xml as an example.
	lib/sample/eml-sample.xml (diff)
Commit c32cbe942ed17bca2e80bb4d6ee874af84967532 by gitcode Adjusted documentation on the 'purpose' field to indicate that it is used to provide a data synopsis as needed.
	xsd/eml-dataset.xsd (diff)
Commit 063bda9edf38d0dd1de3adfb496ce5801a502bf9 by gitcode renamed citation to usageCitation to reflect comments in issue #259. Also updated the definition to reflect the intended purpose of the field.
	xsd/eml-dataset.xsd (diff)
Commit 002921b709d6a300cb47399f7c788e990ee808cb by petridish Fix outdated references to SVN and listserv
	index.html (diff)
	eml-faq.xml (diff)
Commit 7ae63c78cd363840a8d1e4520bac590f29051e86 by petridish Fix XML syntax errors in internationalization example
	buildDocBook.xsl (diff)
Commit b3efd4192dd5f9421abdbf0b3251fcfa83abc7d5 by petridish Fix invalid lang codes in internationalization example
	buildDocBook.xsl (diff)
Commit 20bdb1a5720178026651c025b90838992e712f43 by gitcode Added task board to README.
	README.md (diff)
Commit 287c3bcbb7d87524ad774278410b9f3ce81e618a by gitcode Simple travis build
	.travis.yaml
Commit a2ec122a1d4f3b17feb092e9574f363b0a674110 by gitcode Switch travis to language generic to avoid ruby build.
	.travis.yaml
	.travis.yml
Commit cbdc86fcf212aa776749c04ac2aca1a75db275aa by gitcode Travis badge
	README.md (diff)
Commit 1ff36182cda5a0530ada6e9c0095c2a967e81b1d by gitcode Standardize protocol namespace to 'pro'. Closes #230.
	eml-documentation.xsl (diff)
	xsd/eml.xsd (diff)
Commit f24b8780b5418e56dc452be391f76216b280a53c by gitcode Modified build to allow building docs offline. Previous docs made references to DTD files on OASIS servers. Removed so that the build can work offline.  DTD DOCTYPE references seem superfluous for our purposes.
	eml-faq.xml (diff)
	eml-211info.xml (diff)
	sortDocBook.xsl (diff)
	buildDocBook.xsl (diff)
	eml-210info.xml (diff)
Commit d1a8c74ed9c4baa5a7da3c4cd0d4d01520f10e94 by gitcode Add new elements for propertyURI and propertyLabel. Also, rename the termURI to valueURI, to reflect its use as the value of a property.
	xsd/eml-resource.xsd (diff)
	xsd/eml-attribute.xsd (diff)
	xsd/eml-semantics.xsd (diff)
	xsd/eml-entity.xsd (diff)
Commit ffba2d9cb7b33333ff31d3a594f5c5ba1683c643 by gitcode Added EML semantics example document.
	src/test/resources/eml-semantics.xml
Commit 083d6d1f210c60bfbf4cc1fae6dec08bcc46f588 by gitcode Added more complete annotation example.
	src/test/resources/eml-sample.xml (diff)
Commit 591af29329bb2bc5b0f38731a1fab7c7526015ad by gitcode Improved documentation for personnel element. Reference issue #281.
	xsd/eml-project.xsd (diff)
Commit 2979d5ccf2ef4109ab830a505e5565709deb10b0 by gitcode Add a local copy of xml.xsd. The version 2.1.1 internationalization changes introduced the need for adding the xml.xsd file to support `xml:lang` attributes on internationalized text strings.  However, the schema import pointed at a network location of the schema file, which prevents validation when offline.  Adding xml.xsd to the schema dir and referencing the local copy allows offline validation to succeed and prevents injection attacks on the remote schema file.  Need to verify that this is the right version of xml.xsd.
	xsd/eml.xsd (diff)
	xsd/eml-resource.xsd (diff)
	xsd/eml-text.xsd (diff)
	xsd/xml.xsd
Commit eb4ed60f96ed8ce563406816ef1ccbb568b81a2e by gitcode Use EML-style camel case field names for `AwardType`. Also, add an example of the new `award` element.
	src/test/resources/eml-sample.xml (diff)
	xsd/eml-project.xsd (diff)
Commit 869ebdfcc52da82829f5304cec550b9f6a852596 by gitcode Fixed spelling in members file.
	members.md (diff)
Commit aca06e62771eabc7d44c0b6618068b1a409a63dc by gitcode Modified docbook and test resources to validate and pass tests.
	src/test/resources/eml-datasetWithAccessOverride.xml (diff)
	src/test/resources/eml-spatialVector.xml (diff)
	src/test/resources/eml-datasetGRing.xml (diff)
	src/test/resources/eml-attribute.xml (diff)
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	src/test/resources/eml-literatureInPress.xml (diff)
	src/test/resources/eml-sample.xml (diff)
	src/test/resources/eml-method.xml (diff)
	src/test/resources/eml-semantics.xml (diff)
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	src/test/resources/eml-inline.xml (diff)
	sortDocBook.xsl (diff)
	src/test/resources/eml-offline.xml (diff)
	src/test/resources/eml-datasetMultipleDistribution.xml (diff)
	src/test/resources/eml-i18n.xml (diff)
	src/test/resources/eml-physical.xml (diff)
	src/test/resources/eml-text.xml (diff)
	src/test/resources/eml-view.xml (diff)
	src/test/resources/eml-unitDictionary.xml (diff)
	src/test/resources/eml-project.xml (diff)
	src/test/resources/eml-software.xml (diff)
	src/test/resources/eml-datasetWithAccessUnitsLiteralLayout.xml (diff)
	src/test/resources/eml-datasetGringpoint.xml (diff)
	buildDocBook.xsl (diff)
	src/test/resources/eml-dataset.xml (diff)
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	src/test/resources/eml-entity.xml (diff)
	src/test/resources/eml-datasetWithNonwordCharacters.xml (diff)
	src/test/resources/eml-datasetWithAccess.xml (diff)
	src/test/resources/eml-dataTable.xml (diff)
	src/test/resources/eml-party.xml (diff)
	src/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
	src/test/resources/eml-citationWithContactReference.xml (diff)
	src/test/resources/eml-protocol.xml (diff)
	src/test/resources/eml-datasetWithCitation.xml (diff)
	src/test/resources/eml-literature.xml (diff)
	src/test/resources/eml-softwareWithAcessDistribution.xml (diff)
	src/test/resources/eml-physical-inline-cdatasection.xml (diff)
	src/test/resources/eml-physical-inline.xml (diff)
	src/test/resources/eml-access.xml (diff)
	src/test/resources/eml-citationWithContact.xml (diff)
	src/test/resources/eml-datasetWhitespacePatterns.xml (diff)
Commit c54463f60330fa601e0e446000aa09387fc1a75d by gitcode Update eml-party test example with ORCID.
	src/test/resources/eml-party.xml (diff)
Commit a4572f0605b350dc51cee1369ff66e03e8b6b352 by gitcode Initial pass at introduction, acknowledgements, and gettingStarted sections. All sections are of type TextType, which still needs to be modified to support Markdown syntax.
	xsd/eml-dataset.xsd (diff)
	src/test/resources/eml-data-paper.xml
Commit d49a7a72c5c622e4cef360184cfab11756207768 by gitcode Rebuilt eml.jar for 2.2.0 support.
	lib/eml.jar (diff)
Commit 54c7cd797dd3310630c197160e2882a4526c1be1 by gitcode Drafted new fields for data paper support. This includes a new `markdown` element in `txt:TextType` to support Github flavored markdown.  And new elements for an introduction, gettingStarted, and acknowledgements.  See issue #269 and #275.
	xsd/eml-text.xsd (diff)
	src/test/resources/eml-data-paper.xml (diff)
Commit ef747dff61f39f1f122e321ae9572fac47f54f73 by gitcode Make the `award` element valid in the sample EML document.
	lib/sample/eml-sample.xml (diff)
Commit 781d24eaa7dc8d2a5b3189a0bd4b46d1a0de5b3e by gitcode Add the semantics module to the doc generator.
	eml-documentation.xsl (diff)
Commit 2f72c4f51e09610a6e416f56b8959095b8dc40c3 by gitcode Add link to GFM in example markdown.
	src/test/resources/eml-data-paper.xml (diff)
Commit c70fcf0061e5eef7b9fb8bba21df17bda5bb0c13 by gitcode Improve markdown documentation. Include desciptions of indenting, CDATA, and how image links are handled relative to EML.
	xsd/eml-text.xsd (diff)
Commit a401c6cf6a5bae1fa0fadfe7227ae09dd5f0c983 by gitcode Check if the ant tests work in Travis.
	.travis.yml (diff)
Commit c37b67b35e2d55edf4d7f55a43a4ed1a9f7beb6a by mob added an abstract containing a sample equation eml-data-paper.xml
	src/test/resources/eml-data-paper.xml (diff)
Commit de214f33c90dff86b750f8c99f83b02a61647c02 by gitcode changed replaced -> augmented
	xsd/eml-project.xsd (diff)
Commit 733a650e43d4d31ca6ed04d71e1326687209a79b by gitcode Changed `propertyURI` and label to optional. Added documentation to indicate that, when propertyURI is not provided, then the property defaults to dc:subject for resources and entities, and to oboe:MeasurementType for attributes.
	xsd/eml-resource.xsd (diff)
	xsd/eml-semantics.xsd (diff)
	xsd/eml-attribute.xsd (diff)
	xsd/eml-entity.xsd (diff)
Commit 5b5d47f2e1f02b55e8d05718c26f56fc3a973e9b by gitcode Add machine-readable license element.
	xsd/eml-resource.xsd (diff)
	src/test/resources/eml-data-paper.xml (diff)
Commit 491b715961cf7ffe931fce3237bfc6ccdff58687 by gitcode Rename license element to avoid conflict.
	src/test/resources/eml-data-paper.xml (diff)
	xsd/eml-resource.xsd (diff)
Commit d7195e85fa724c0f890fa5fd9a84b992ac306e34 by gitcode Fix typos in docs.
	xsd/eml-text.xsd (diff)
Commit 0ef141f327369d73f487fa269441209d946c2dc0 by margaret.obrien 1) stmml.xsd with two new attributes for a unit: deprecatedInFavorOf and udunitsSynomym. 2) Version 1 of an eml-unitDictionary.xml that uses the new unit attribues.
	eml-unitDictionary.xml (diff)
	xsd/stmml.xsd (diff)
Commit d3a8990074b24ee94d2ee688db9172165271b4e1 by mmaier Revert to eml-unitDictionary.xml to 82dd0dd4178e27097f15813bb2c4d15f526e814b
	eml-unitDictionary.xml (diff)
Commit 526c28560e83e6d1f93752cd830eaccef947974a by mmaier add deprecatedInFavorOf information
	eml-unitDictionary.xml (diff)
Commit 7d0ae428b15aafe05c2a8ecbaeda5fefce8fb5dc by gitcode Further fleshed out sections in example data paper.
	src/test/resources/eml-data-paper.xml (diff)
Commit 3beb10b2850fccf66789253041563d53a4ccbecf by gitcode Added support for new citation formats, fields, and inline citations. These include a new ability to use Bibtex citation format both within the `citation` element, and within a new `bibtex` element, to create lists of refs using these in a literatureCited element (#300), as well as in usageCitation (#259), and referencePublication (#277) elements. All of this helps support data papers (#269), for which pandoc-style citation keys can be used to cite these references in the text of Markdown blocks in the EML document.  Added these features as demonstrations in the eml-data-paper.xml sample document.
	xsd/eml-dataset.xsd (diff)
	xsd/eml-literature.xsd (diff)
	xsd/eml-text.xsd (diff)
	src/test/resources/eml-data-paper.xml (diff)
Commit 1e07fe90a6d9755acfdbfa85606cfe5ec4cf689d by gitcode Fix validation error on schema location for data paper sample doc.
	src/test/resources/eml-data-paper.xml (diff)
Commit 793afde6d93b64473afef65bff480ba471aad9f4 by gitcode Check that Travis build fails when tests fail or error.
	src/test/resources/eml-data-paper.xml (diff)
	build.xml (diff)
Commit af2726554432c93fcf6fb90b5f402b6a4896004b by gitcode Fix data paper sample so that it validates.
	src/test/resources/eml-data-paper.xml (diff)
Commit dcd2784182f97b8191239ed5a203171e81baa7f8 by mmaier Add new units
	eml-unitDictionary.xml (diff)
Commit 864e59e0e0b3854da02ffa4851b00b97ade9881f by mmaier udunitSynonym for all units
	eml-unitDictionary.xml (diff)
Commit 05bf32bc20e375bf951e876db20d8347a20e0870 by mmaier Test file with all 2.1.1 units
	src/test/resources/eml-2.1.1-all-units.xml
Commit ed0d5dacc8f89784e66b6ab907987f89bb7ab05f by mmaier Schema location change
	src/test/resources/eml-2.1.1-all-units.xml (diff)
Commit 77fc07f42a8e57625affaeaff04db83008ba2d2c by margaret.obrien set the namespace for stmml-1.2 in the root element. added a missing multiplierToParentSI
	eml-unitDictionary.xml (diff)
Commit 0a22907f1b3cca80d5b3b7b95ff697c2095d7b2c by mmaier fixes to all-units test
	src/test/resources/eml-2.1.1-all-units.xml (diff)
Commit 595f1dc062e62d0b15aadda4d120ea899eac96a7 by gitcode Ensure CitationListType has at least one citation.
	xsd/eml-literature.xsd (diff)
Commit 07b449808b7ed5b7eb9aed7f56a0eea23e8f13d5 by gitcode Changed `dependency` to use a ComplexType. Removed use of `ref` to a global element.  Details in issue #305.
	src/test/resources/eml-software-220.xml
	xsd/eml-software.xsd (diff)
Commit d53167203e50088ae3226335aba85df32ffb8238 by gitcode Rename test file.
	src/test/resources/eml-software-220.xml
	src/test/resources/eml-software-dependency.xml
Commit 3a751d007d29f514f7f93b89f954c9c3e2947200 by gitcode Completed fields for semantic annotation. See discssion in issue #25.
	xsd/eml.xsd (diff)
	src/test/resources/eml-semantics.xml (diff)
	xsd/eml-semantics.xsd (diff)
	src/test/resources/eml-data-paper.xml (diff)
	src/test/resources/eml-sample.xml (diff)
	xsd/eml-attribute.xsd (diff)
	xsd/eml-entity.xsd (diff)
	xsd/eml-resource.xsd (diff)
Commit c494365efd777f6a3f6021b72f3eda114307ea69 by gitcode Update namespace of etst cittion docs. Work towards #304.
	src/test/resources/citation-sbclter-bibliography.211.xml (diff)
	src/test/resources/citation-sbclter-bibliography.232.xml (diff)
	src/test/resources/citation-sbclter-bibliography.231.xml (diff)
	src/test/resources/citation-sbclter-bibliography.285.xml (diff)
	src/test/resources/citation-sbclter-bibliography.51.xml (diff)
	src/test/resources/citation-sbclter-bibliography.284.xml (diff)
	src/test/resources/citation-sbclter-bibliography.279.xml (diff)
	src/test/resources/citation-sbclter-bibliography.202.xml (diff)
	src/test/resources/citation-sbclter-bibliography.297.xml (diff)
	src/test/resources/citation-sbclter-bibliography.233.xml (diff)
	src/test/resources/citation-sbclter-bibliography.50.xml (diff)
	src/test/resources/citation-sbclter-bibliography.203.xml (diff)
	src/test/resources/citation-sbclter-bibliography.201.xml (diff)
	src/test/resources/citation-sbclter-bibliography.280.xml (diff)
	src/test/resources/citation-sbclter-bibliography.289.xml (diff)
	src/test/resources/citation-sbclter-bibliography.296.xml (diff)
Commit 394bb9432cba46cc54497e101d9db054d76ea205 by margaret.obrien added units for issues #140, #115. renamed unitTypes for issues #285, #285
	eml-unitDictionary.xml (diff)
Commit b18bb244ced0022a890b311911bd74396aea9c1a by margaret.obrien parentSI units are all in preferred spelling
	eml-unitDictionary.xml (diff)
Commit d2a63db10662b8e30618199db60f6dcc55033aee by margaret.obrien Added to taxonomicClassificationType: an id on the taxonomicClassification; new child element with attribute "provider". Added basic documentation
	xsd/eml-coverage.xsd (diff)
Commit 7bab17ba92658b30b20381225204ba226d2c1b91 by margaret.obrien set taxonId@provider to anyURI. shortened examples and documentation
	xsd/eml-coverage.xsd (diff)
Commit b65bc48801ea9cd87c3cdcd7cd6a6548a952cff0 by margaret.obrien added units from issues #140, #151, corrected a few copy-paste errors. Updated many definitions (based on wikipedia info)
	eml-unitDictionary.xml (diff)
Commit 9cc4595e186eebe54f21cfd9a1b3fdcfd3243bd9 by margaret.obrien unitTypeDefintions file updated with unit names from unitDictionary.xml
	xsd/eml-unitTypeDefinitions.xsd (diff)
Commit 3dd83f8dab05bfbea8388e85264a1791bf5e7680 by margaret.obrien added example with new taxonId element, per issue #141
	src/test/resources/eml-i18n.xml (diff)
Commit 89855dda41130afc6b80b43e74413fd10ddc0ef6 by margaret.obrien taxonCov documentation fixed for species binomials, issue #250
	xsd/eml-coverage.xsd (diff)
Commit 2b524be958604e35f174708547e47e82c4dc3751 by margaret.obrien dateTime docs, per issue #268: updated examples, added notes on ISO rules
	xsd/eml-attribute.xsd (diff)
Commit 01db92026f6b153ea8d85da8093286d8d6129a2c by margaret.obrien documentation: added note about species binomials. added examples to taxonId
	xsd/eml-coverage.xsd (diff)
Commit 0d8ff0952cf98f07cfc973a0335612d07a00f745 by gitcode Ignore .DS_Store files.
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Commit 49736569989c550bb9daf1cf31253042ca394e33 by gitcode Reformat buildDependency.xsl for readability and indentation.
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Commit c76944be288a142b2ee08360626fed170ac97588 by gitcode Fix dependency tree generation using new file locations. Previously, the xsl file did not manage the change to using the xsd directory location.  Now it does.
	buildDependencyTable.xsl (diff)
Commit 5c4635c14dae8db20ef9c571125d39bf09e26955 by gitcode Experiment with moving EML documentation into markdown files in docs.
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Commit af13811b0fec38fc7381ad48f98422feb8ee9860 by gitcode Test using markdown for documentation.
	index.html
	index.md
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Commit 199790442aa9073f8296254df5a44ab7962a6dfd by gitcode Set theme jekyll-theme-slate
	_config.yml
Commit 504460c5227d041305fe0e1f0bd581141ade09de by gitcode Remove docbook ancillary docs files, which are now in markdown format.
	eml-faq.xml
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Commit 7b937da111a7879e0615eab0f0da1bbbbe87be3f by gitcode Move documentation into docs directory.
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	README.md (diff)
	members.md
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Commit 245d5f3da16009e69332402d50c55f26deaa1f35 by gitcode Update rules language and formatting.
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Commit 2d0ebdcdbcf15dc47aaa27e0d6dea83d5ca2b23d by gitcode Fix location of CSS file in new directory layout.
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Commit 61812a495949ff5d003e40a47f0c7986af881e6d by gitcode Moved references handling instructions to markdown format in docs.
	references_XSLT.txt
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Commit 9fda978eee836ab2203e7000dd22a5c74d57b5a7 by gitcode add EML 2.2 changes document See issue #308
	docs/eml-220info.md
Commit c2b1d2f45ee5072204253380bb0f26a3193cf5ed by gitcode Revise what's new after comparing against mob's ASM slides
	docs/eml-220info.md (diff)
Commit c5f9cc738f87b6264865a0e2bc9e10b657bcdb4c by gitcode Restructured README to present citation format. Also added new contributors, restructured the document order, and rewrote the abstract.
	README.md (diff)
Commit 048285a7923766fe9ee55868ada7744db4b318ec by gitcode Added Mitchell.
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Commit f5819655746555da4f2d41bda122dea729b236e2 by mob updated namespace at top level. noticed that some test files have stmml namespace in additional metadata also. to do
	style/eml211to220.xsl
Commit 0ff9afe996248c9beeec26d2f54c723ec36407ac by margaret.obrien stmml namespace updated in additionalMetadata also
	style/eml211to220.xsl (diff)
Commit cfe1b405474fa45c749c5be6423cb0cd9d218ead by mob adding a template to move appinfo to documentation
	style/eml_appinfo2documentation.xsl
Commit 74f29b536e7a79e92833fec55e4156bb7d86abb6 by gitcode disambiguate literatureCited example Fixes #318
	docs/eml-220info.md (diff)
Commit 77050db71954849169cdb205f3712c3501e69923 by gitcode QUote elements to avoid build problems in html output.
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Commit b284202b6f61866f6cc0bfdc98711522de6af5a4 by gitcode Fix link to FLED to point at archive.org copy.
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Commit 782c8ad72a17a6b74d20144eb8e11d6164a27e73 by gitcode Initial structure for a Bookdown version of the EML spec. More work to be done to convert the old docbook structure to markdown. See issue #321.
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	docs/_output.yml
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	docs/index.Rmd
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Commit ef1f73d7b792cc4a18acaaf773b20fe4bd0f15d5 by gitcode Added bookdown configuration for citations.
	docs/about-this-book.md
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Commit ce9653468316034afe3dd58226d4943ce33cc31e by gitcode Initial conversion of spec to markdown. Lots of reorganization remaining.
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	docs/ch3-spec-architecture.md
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Commit 15cad4cb601d3df9472049238149ff6c9893fdc8 by gitcode Fix typo in abstract.
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Commit 576c69b098d2d18a985dec581d0fdc40273026f6 by gitcode Reformat list.
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Commit f5ef47f7b00578bfad2218cbd4216884ae092014 by gitcode Add semantics module overview section. Stubbed from the schema. Needs extension.
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Commit 4ca6efd8446899206b973e2c1c8bcf1dcd3ae840 by gitcode Removed module description text from schemas. This text is now in the specification document in "docs".
	xsd/eml-coverage.xsd (diff)
	xsd/eml-view.xsd (diff)
	xsd/eml-physical.xsd (diff)
	xsd/eml-constraint.xsd (diff)
	xsd/eml-software.xsd (diff)
	xsd/eml-literature.xsd (diff)
	xsd/eml-storedProcedure.xsd (diff)
	xsd/eml-dataset.xsd (diff)
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	xsd/eml-attribute.xsd (diff)
	xsd/eml-unitTypeDefinitions.xsd (diff)
	xsd/eml-dataTable.xsd (diff)
	xsd/eml-party.xsd (diff)
	xsd/eml-resource.xsd (diff)
	xsd/eml-entity.xsd (diff)
	xsd/eml-semantics.xsd (diff)
	xsd/eml-spatialVector.xsd (diff)
	xsd/eml-project.xsd (diff)
	xsd/eml-spatialRaster.xsd (diff)
	xsd/eml-text.xsd (diff)
	xsd/eml-methods.xsd (diff)
	xsd/eml-access.xsd (diff)
	xsd/eml-spatialReference.xsd (diff)
Commit 48b330a91657e3b8e0c6f3d3eab0ded986333a48 by gitcode Removed specification text from xsl. This text is now in the docs directory in markdown.
	buildDocBook.xsl (diff)
Commit ec604a4c5eafdecf5e37402c04cb13b47ffbf7e3 by gitcode Remove unneeded build stages now that docs are in markdown.
	build.xml (diff)
Commit 94d25b3d0120fd1ed6332e1359f07acb1e71f1ed by gitcode Remove docbook from the build and tests.
	style/docbook-xsl-1.50.0/htmlhelp/profile-htmlhelp.xsl
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	style/docbook-xsl-1.50.0/common/sv.xml
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	eml.xpr
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	style/docbook-xsl-1.50.0/params/citerefentry.link.xml
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	style/docbook-xsl-1.50.0/params/template.xml
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	style/docbook-xsl-1.50.0/xhtml/html.xsl
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	style/docbook-xsl-1.50.0/params/preface.autolabel.xml
	style/docbook-xsl-1.50.0/params/htmlhelp.map.file.xml
	style/docbook-xsl-1.50.0/html/synop.xsl
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	style/docbook-xsl-1.50.0/params/monospace.verbatim.properties.xml
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	style/docbook-xsl-1.50.0/fo/fo.xsl
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	style/docbook-xsl-1.50.0/html/literalLayout.xsl
	style/docbook-xsl-1.50.0/xhtml/chunktoc.xsl
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	buildDocBook.xsl
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	style/docbook-xsl-1.50.0/params/saxon.callouts.xml
	build.xml (diff)
	style/docbook-xsl-1.50.0/common/pl.xml
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	style/docbook-xsl-1.50.0/xhtml/chunk-common.xsl
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	style/docbook-xsl-1.50.0/images/toc-plus.png
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	style/docbook-xsl-1.50.0/params/generate.toc.xml
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	style/docbook-xsl-1.50.0/fo/titlepage.xsl
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	src/test/java/org/ecoinformatics/emltest/SaxValidateTest.java (diff)
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	style/docbook-xsl-1.50.0/common/titles.xsl
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Commit 5cc1ecb3ab08a962e947f8266a98791ab8378c45 by gitcode Remove accidentally committed config file.
	eml.xpr
Commit 66e7e33d50463fb86bb741ebb996ca0fc2a272e7 by stevan.earl adding eml-literature file to document new citation types
	docs/eml-literature.md
Commit c2f7f0ec6882cce343d52b6ffefc1025d1d2d4e7 by gitcode Clarified documentation on the packaeId attribute.
	xsd/eml.xsd (diff)
Commit ea2acf7eb62e57528be231dc15d0685ffc595e48 by gitcode Remove erroneous default value for system attributes. Older eml documents may have set this explicitly, but the lack of sa default should not cause any compatibility issues.
	xsd/eml-resource.xsd (diff)
Commit 7360165e7e9327e6c3a03e9c7e168f5de3def28b by gitcode Rewrote validation section to be much clearer. Also provided a pseudo-code example of validation logic, as requested in issue #306.
	docs/ch3-spec-architecture.md (diff)
Commit be0bf2df784f2e6b27b19fbf754b2cf21a0f94f1 by gitcode Rewrote validity and features sections, and renamed files. Also updated section headings to be clearer.
	docs/eml-220info.md (diff)
	docs/eml-features.md
	docs/ch1-spec-preface.md
	docs/ch2-spec-overview.md (diff)
	docs/_bookdown.yml (diff)
Commit 35cec8af81bfba7a49792273debbef41143d5e41 by gitcode Changed exmaples to use doi identifiers for clarity.
	src/test/resources/eml-sample.xml (diff)
Commit b164dde8e09d4680e814cf33ce363aa61b52e98d by gitcode Rename validation chapter.
	docs/eml-validation-refs.md
	docs/ch3-spec-architecture.md
	docs/_bookdown.yml (diff)
Commit 77f60e46a9ff1f761549ab6e0b936bfa823a4387 by gitcode Rename chapters more consistently.
	docs/references.md
	docs/release-notes.md
	docs/eml-modules.md
	docs/_bookdown.yml (diff)
	docs/eml-about-this-book.md
	docs/eml-release-notes.md
	docs/about-this-book.md
	docs/ch2-spec-overview.md
	docs/contributors.md
	docs/eml-contributors.md
	docs/eml-references.md
Commit dcd1ecf3f2cc09d82844f7dac5896ff7cbcf4c09 by gitcode Update TOC links.
	docs/_output.yml (diff)
Commit 7bca396cf32d1dbe62a9853ed97eaff1b69ea856 by gitcode Incorporate eml-literature module into the eml-module.md.
	docs/eml-modules.md (diff)
	docs/eml-literature.md
Commit 3b4a70d0128bdedd71c5a13804b1fd0af666c97a by gitcode Reorganize modules section into 4 chapters plus ancillary material.
	docs/_bookdown.yml (diff)
	docs/eml-internationalization.md
	docs/eml-modules-utility.md
	docs/eml-modules.md
	docs/eml-modules-resources.md
	docs/eml-modules-discovery-interpret.md
	docs/eml-modules-data-structure.md
Commit 0b372148dc952c3c4c3b4eb8dd1f24a5cf1fb70c by gitcode Add Getting Started section.
	README.md (diff)
Commit 9adbcd083735235fb09b30fa4ee3929a8ac12f29 by noreply replace referencesList with referencesHash
	docs/eml-validation-refs.md (diff)
Commit b661eea5f0af874c64dfaf372e1df6f9969d427b by gitcode Spell Timothy Whiteaker correctly
	README.md (diff)
	docs/eml-contributors.md (diff)
Commit 6c0da2874e96601bd440ed2c3de4fc59bf0414f5 by ssfchong add MeasurementType annotations to percent cover and biomass attributes Added the measurement type semantic annotations to the 'percent cover' (att.4) and 'biomass' (att.12) attributes.
	src/test/resources/eml-sample.xml (diff)
Commit c99d23b522770fb2fed7bed1172b07c36f38091d by stevan.earl minor grammatical edits to eml-validation-refs
	docs/eml-validation-refs.md (diff)
Commit 8cacf06572ad3490bc6a07c8e4b7f3a4dcab7b96 by gitcode Fix filename typo in schema docs. Fixes #326.
	xsd/eml-spatialReference.xsd (diff)
Commit 3c7d8e341bf8a428b2f80bab28454f56eaa31ba2 by gitcode Changed annotation example to not reuse the packageId. Now the dataset has a different ID than the package, and I added annotation examples pointing at each.
	lib/eml.jar (diff)
	src/test/resources/eml-sample.xml (diff)
Commit 131dc542cb0133438b1d5d04557213f513c76249 by mob adding script to prep xsd files for generating documentation in Oxygen
	bin/prep_documentation.sh
Commit cb64fe0ba868075fb8c000a518a05623206c3345 by margaret.obrien adding the transformed files in a tmp dir
	tmp/._oxygen_documentation_settings.xml
	tmp/eml-constraint.xsd
	tmp/eml-spatialRaster.xsd
	tmp/eml-spatialVector.xsd
	tmp/eml-access.xsd
	tmp/eml-protocol.xsd
	tmp/eml-dataTable.xsd
	tmp/eml-storedProcedure.xsd
	tmp/eml-coverage.xsd
	tmp/eml-project.xsd
	tmp/eml-methods.xsd
	tmp/eml-physical.xsd
	tmp/eml-software.xsd
	tmp/eml-unitTypeDefinitions.xsd
	tmp/eml-party.xsd
	tmp/eml-entity.xsd
	tmp/stmml.xsd
	tmp/eml-documentation.xsd
	tmp/eml.xsd
	tmp/eml-text.xsd
	tmp/eml-attribute.xsd
	tmp/eml-literature.xsd
	tmp/eml-view.xsd
	tmp/eml-semantics.xsd
	tmp/eml-resource.xsd
	tmp/eml-spatialReference.xsd
	tmp/oxygen_documentation_settings.xml
	tmp/xml.xsd
	tmp/eml-dataset.xsd
Commit d44c143f0c44420ea1dab2d4fb2b7d0037c62be0 by gitcode Update tests to detect invalid files. Also add annotation tests for invalid files. Related to issue #328.
	build.xml (diff)
	src/test/resources/eml-unitDictionary.xml
	src/test/resources/invalidEML/eml-datasetInvalidGringpoint.xml (diff)
	src/test/resources/invalidEML/eml-error-references.xml (diff)
	lib/sample/eml-sample.xml
	lib/sample/sampleLTERIntellectualRights.xml
	src/test/resources/invalidEML/eml-error3.xml (diff)
	src/test/resources/invalidEML/eml-error-annot-missing-id.xml
	src/test/resources/invalidEML/eml-error-annot-ref-missing.xml
	src/test/resources/invalidEML/eml-error1.xml (diff)
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
	src/test/resources/eml-data-paper.xml (diff)
	src/test/resources/invalidEML/eml-error4.xml (diff)
	lib/eml.jar (diff)
Commit a7cc50c457f61a08f6b76a3281b8923cf79158a5 by gitcode Added test files for annotations. These tests are not passing, because they illustrate issues that the EML parser  should deal with with annotation references but currently does not handle.
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
	src/test/resources/invalidEML/eml-datasetInvalidGringpoint.xml
	lib/eml.jar (diff)
Commit 41722e373ff01297410f42930f339159e067ed0c by gitcode First thoughts on an alternative validator for EML-specific rules.
	src/main/java/org/ecoinformatics/eml/EMLValidator.java
Commit d6c9464fd81c51b0bcb96352a892ac1e4ea3c53c by gitcode Make validate() public.
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 7a0405fd3fe20a4fb4f2ceed7bf9d08f2a356018 by gitcode Add packageId to the list of identifiers to be checked.
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 8ecf01007c19794d2feea6974bf98755fe0e5c9b by gitcode Start a new EMLValidator class to replace EMLParser. This class is far more efficient, and does not require any namespace configuration.
	src/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java
Commit 97e8c76dedd134b690b760a3607a6c248cf619b7 by gitcode Added new jar for the EMLValidator. Note that the EMLValidator is not yet complete, but has a subset of the rules implemented. Which is why tests are not now passing.  I will return to this shortly and finish off the rest of the validation rules.
	lib/eml.jar (diff)
Commit 66e2bc673daaf318d4fb8dd99934745fe9487ba7 by ssfchong initial commit This is an outline for the semantic annotations primer documentation.
	docs/eml-semantic-annotations-primer.md
Commit 1ceab640dffb4bf190ac0187dd9f25f034310736 by noreply add examples to /eml/annotations and /eml/additionalMetadata Added EML examples to the /eml/annotations and /eml/additionalMetadata sections of the primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 05332e0d5008b25c8136c2161070cf52a79ea78e by noreply add code sample to attribute annotation example Added an EML code snippet to demonstrate how EML attributes are annotated.
	docs/eml-semantic-annotations-primer.md (diff)
Commit d60f2b6281ca4ad469ef37b9eaebca2e6a589b40 by noreply add example dataset annotation, fixed formatting Added sample code to show an annotation example in the dataset element. The spacing format in the EML attribute element sample code was also edited.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 0d225559ac2e3aa0cb9265d24ebe3e3bd1e00955 by noreply add draft of attribute annotation text In progress draft of the attribute annotation documentation
	docs/eml-semantic-annotations-primer.md (diff)
Commit 04c6d9a491ddc394994010f0d2a383577ca08dca by noreply add documentation to attribute annotation section Added documentation to the attribute annotation section.  Also changed order of the document
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4fd2f1a8290e895d7250ea05464bdbd8d48a68b2 by noreply edit headings, and attribute, entity, and introduction sections Edited the headings, and attribute, entity, and introduction sections.
	docs/eml-semantic-annotations-primer.md (diff)
Commit f043d18cf6d3400fdfc83a027fe2b001f1ccea49 by noreply describe containsMeasurementsOfType object property Added a sentence about oboe:containsMeasurementsOfType being a "default" object property for annotating measurements.
	docs/eml-semantic-annotations-primer.md (diff)
Commit e59a4714e6370c768dcc1343c37f1e6e2fb18bc3 by noreply edit attribute annotation text Edited the text for the attribute annotation section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 00815bebcad74a83ac3ba113c76ed0404e09156c by noreply add example for entity annotation Added a code snippet showing an example entity annotation.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 86f259574075127e9d5817639adf1d37e3f79853 by noreply add entity-level annotation text Added text to the entity-level annotation section
	docs/eml-semantic-annotations-primer.md (diff)
Commit 91c2b45836260285d4c48941a1295a96ba676672 by noreply edit entity and attribute annotation sections Edited the text in the entity and attribute annotation sections
	docs/eml-semantic-annotations-primer.md (diff)
Commit b03bc3754b7343e31da0c809a5f6ca0fdc222051 by noreply edit dataset section Added text to the dataset section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 009c7f96d0e37736e2fd33a3dc652a807d73ebd3 by noreply add text to dataset section Added text that describes how to annotate datasets.
	docs/eml-semantic-annotations-primer.md (diff)
Commit e24c036d1f5b53644b2dcefc633b1c06bd534635 by noreply add text to /eml/annotations section Added text to the /eml/annotations documentation.
	docs/eml-semantic-annotations-primer.md (diff)
Commit f6dc2b881a350acd6e3643339e1b548bd951063a by noreply add explanation of examples to /eml/annotations Added text explaining the annotation examples in the /eml/annotations section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit bf84a1574e37d061c116515941878a607c0a92e3 by gitcode Add the annotations primer to the gitbook.
	docs/eml-semantic-annotations-primer.md (diff)
	docs/_bookdown.yml (diff)
Commit 25e5217a4ab51e10ca8a96c266148ecc6da5fbe6 by noreply add text to additionalMetadata section Added text to the additionalMetadata section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 3f36ec905993e2eaed2c04b9184ce504e7b25a9b by noreply add text to the additionalMetadata section Added text to the additionalMetadata section
	docs/eml-semantic-annotations-primer.md (diff)
Commit 25f6b567b1edf76e3b0d6526f28f1a2ca367c6a3 by noreply update text in the /eml/additionalMetadata section Added more text to the /eml/additionalMetadata section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 82a5cb800e474ffbae81f7ce10f9d0facca0c060 by noreply add introduction to primer Added introductory text to the semantic annotations primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit b4cf461d1ec0a65739c78a7f235cc96d8b100cd5 by noreply add text to introduction Added text to the semantic annotations introduction section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit eb8263e2bd5f5ec8c9456ac1d5c6c687e87bffaf by noreply reorganize introduction Reorganized introduction section and created a separate section for Semantic Annotations in EML 2.2.0
	docs/eml-semantic-annotations-primer.md (diff)
Commit 434b9036063dddf9cf6c322affa43f5268b3ae96 by noreply update semantics in EML 2.2.0 section Updated the semantics in EML 2.2.0 section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit e18cc9e301e2d36e590d8c1808d478df68e6880b by noreply update headings and text Updated the headings and text for the Semantic Annotations in EML 2.2.0 section in the primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit aeed2a3623fa41d2c1f29e0e4fa1d00064b12935 by noreply reorganize semantic annotations primer Reorganized the semantic annotations primer so that it flows better.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 6865d196fb9b12453eb4ad1d83e4a00ac863b18f by noreply update semantic annotation primer Edited text in the Semantic Annotations in EML 2.2.0 section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 440aef5d88126222be58be0da1dbbfd4a6717b00 by noreply updated semantic annotations primer Edited the semantic annotations primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit dd03d73b80fb8a9f6b328f0dd563032126bdb669 by noreply edited semantic annotations primer text Added references to other chapters and changed references to /eml/additionalMetadata and /eml/annotations.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 7e135b07eb9b3c2c3f6127b0dfd2f0c2c3949441 by noreply update examples Updated the pattern examples in the semantic annotations primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1d5d2e1133dae03092ba6f0943ad531ac13834a9 by noreply update generic examples Updated the generic examples
	docs/eml-semantic-annotations-primer.md (diff)
Commit 64e5541b22ffcb2c3252653d4908a89bac18688d by noreply edit semantic annotations primer Edited semantic annotations primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit ad21a90f139696146c5341e68dedf4c8f6551f9d by noreply update examples and text Updated the text and EML examples in the semantic annotations primer
	docs/eml-semantic-annotations-primer.md (diff)
Commit 55ffb403daa8cf27eed2f54dadfe61b196bf144e by noreply add label information Added information about the label attribute in the URIs
	docs/eml-semantic-annotations-primer.md (diff)
Commit a7f24f1789e7511863c4b0967afa5533c5f938be by noreply Add label information Add label information to the semantic annotation primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit d922943aa96ef250feb22ddf6bf7a6797e9e1417 by noreply update semantic annotations primer Edited text in semantic annotations primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5500d53d96da861c008026009c48f28a30e5215c by noreply edited examples and text Added labels to the pattern examples. Made edits to the text
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1389f29ab202345e7a4f39adfbb794c7613c39f2 by noreply edit annotation pattern examples Edited the annotation pattern examples so that they are more generic.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 56d05d9c1f9e9e6a3daf8e4e3a1d0a37c671d67c by noreply edit example explanations Made the URIs clickable in the text that explained the examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 16047b0cdd3b9629224b760fe0080216d9d16c54 by noreply add references to data property Added references to data properties, in addition to object properties, when describing the propertyURI elements.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1235e11cca9a7538e55e5f8f40b0949ecff75560 by noreply add specific annotation example Added a more specific attribute-level annotation example and explanation after the dataset/entity/attribute pattern example.
	docs/eml-semantic-annotations-primer.md (diff)
Commit c0c07fc2274bc444d2a54b862cf70b4e235cd96b by noreply edit dataset annotations section Edited the dataset annotation section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1bc11d0cc167e2baec28857413c6b94efdbf81c0 by noreply proofreading edits Made proofreading edits.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 8d3da64f528449c271e6c280e686698da404c28e by noreply clarify explanations about subjects and ID values Clarified that the id attribute value itself is not the subject in a semantic statement, but rather refers to the subject. The subject is the element containing the id.
	docs/eml-semantic-annotations-primer.md (diff)
Commit d76011bdc15204c74c461b46782d92d222587b57 by noreply edit example text Edited the text in one of the examples for clarity.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1d25b0c829b69cc5cdee7a200905bcfd1b6ede34 by noreply edit and add more examples Edited the existing examples. Also added examples to better illustrate the pattern examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 70994e8abcdc5bff07089b9e9260eaacd6c665c5 by margaret.obrien adding a script to build schema documentation using Oxygen
	bin/build_schema_documentation.sh
Commit 7c60bc38f167223dbe93b2e0c259c95d3c0e8200 by margaret.obrien adding script to build documentation
	bin/build_schema_documentation.sh (diff)
Commit c10e03c59a27aa1ec7b4147d71ed9d46af0acbda by noreply edit code blocks highlighting Edited the syntax highlighting in the pattern and example code blocks to make them easier to read.
	docs/eml-semantic-annotations-primer.md (diff)
Commit eb0dcb4eadbc255d017b73c0ef7911b1e54fb35b by noreply clarify use of additionalMetadata element Clarified how the 'additionalMetadata' element is used, as per Bryce's comment.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 062f85e555bea8451de4d8958f9788efb4923693 by noreply edit entity annotation section Made minor edits to the entity-level annotation section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 383a1cd592f8575b705d7759f52a98177fcd584e by noreply add relative links Added relative links to other sections of the bookdown.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 7b0faa8315ac26e98bc972a96c6948906fbf5bd8 by noreply change dataset to top-level resource Change the dataset-level section to top-level resource because other resources can also be annotated.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 0870d1a2415c71d4676d8afb9970ffe324487dad by noreply edit headings and top-level resources section Edited the headings and the information about top-level resources.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1b6adac8f8fc54ad91db30479e6199c8d6236941 by noreply edit top-level resource section Combined the text from the pattern to the top-level resource section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit b74474d3c9c27d7989708a13b794331da428e979 by noreply edit entity-level annotation section Combined the entity pattern text into the entity-level annotation section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 7e166649acf7b8a6d98b16d5f234422aec78e9d9 by noreply update annotations text Updated the top-level resource, entity-level and attribute sections.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 62c09eab48e29a945b8af6d36b8f74cdb7b04dce by noreply edit attribute annotation text, remove pattern Edited the attribute annotation text section and removed the section on patterns for dataset, entity and attribute annotations.
	docs/eml-semantic-annotations-primer.md (diff)
Commit e0a13eec3d4dfffa9492bcf733521c63755195ee by noreply edit annotations element section Removed the pattern for the annotations element section and incorporated the text into the explanation.
	docs/eml-semantic-annotations-primer.md (diff)
Commit b69c1a7b8d2e23ddfbf471d04806f78a0310641f by noreply edit additionalMetadata section Edited the additionalMetadata section and removed the annotation pattern.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 84d7db1144063f23b0b7ff7a564997a0f9f91040 by noreply clean up text Cleaned up some of the text in a few sections.
	docs/eml-semantic-annotations-primer.md (diff)
Commit f3235e0b1e2731b98de102b0128eaa0f53344ba8 by noreply edit introduction Spiced up the introduction
	docs/eml-semantic-annotations-primer.md (diff)
Commit dd6659f741fc6b9cbd29ad4e80dd084454207404 by noreply edit annotations section Edited the annotations element section
	docs/eml-semantic-annotations-primer.md (diff)
Commit 9d82237f7f647610dc3e835c183af3a4d29d44bf by margaret.obrien in example, ref to ITIS is the IRI (URL)
	src/test/resources/eml-i18n.xml (diff)
Commit 3896ff8516451cde272b614ea81de31ef2d755cc by petridish Fix minor issues with Oxygen doc build script - Most major thing is that the config went from command line params to an external config (-cfg arg) which allows a little more tweaking than just the command line args - Fixed issue with final cp -r command that'd fail for me - Fixed various minor issues with string escaping and subprocesses - Added set -e and pipefail because bash
	bin/build_schema_documentation.sh (diff)
	bin/oxygen_documentation_settings.xml
Commit 916b5b31666b518badc825257c9a33da1812aa2c by margaret.obrien examples for taxonId are URIs
	xsd/eml-coverage.xsd (diff)
Commit 04cf0d5ca692e1681281792af1ea1edd27b6ad53 by petridish Update schema diagrams for 2.2.0
	img/eml-methods.png (diff)
	img/eml-dataTable.png (diff)
	img/eml-protocol.png (diff)
	img/eml-view.png (diff)
	img/eml-physical.png (diff)
	img/eml-storedProcedure.png (diff)
	img/eml-semantics.png
	img/eml-attribute.png (diff)
	img/eml-constraint.png (diff)
	img/eml-text.png (diff)
	img/eml-otherEntity.png
	img/eml-resource.png (diff)
	img/eml.png (diff)
	img/eml-dataset.png (diff)
	img/eml-spatialVector.png (diff)
	img/eml-literature.png (diff)
	img/eml-access.png (diff)
	img/eml-entity.png (diff)
	img/eml-software.png (diff)
	img/eml-coverage.png (diff)
	img/eml-party.png (diff)
	img/eml-project.png (diff)
	img/eml-spatialReference.png (diff)
	img/eml-spatialRaster.png (diff)
	img/eml-award.png
Commit eab57e9495524750b5444812818d59fd7570474b by margaret.obrien updated unit enumeration
	xsd/eml-unitTypeDefinitions.xsd (diff)
Commit 9e55c97fcd548b0ef92dafc3a7a59e8a246845af by gitcode Add angle units to unit enumeration so validation works. Now degree, radian, steradian, grad are all back in the standard unit list.
	xsd/eml-unitTypeDefinitions.xsd (diff)
Commit a25c845a9819e631b88ae4405f7b8045c8667e03 by gitcode First pass at new EML Validator. Implements newly clarified validation rules that go beyond the normal schema validation.
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
	src/test/resources/invalidEML/eml-error-annot-missing-id.xml (diff)
	src/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
	lib/eml.jar (diff)
Commit 5036bfaefe28cbb9b6002d108d002987c166c9b7 by gitcode Reformat and document EMLValidator.
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 85b8b8df6c403a3d3c5e090556313d805a1ab973 by gitcode Moved EML module files to new subdirectory. Now the main test directory contains only complete EML files.  Module level files should go into moduleEML, and will only be tested against the SAX parser, as they will no longer pass the test for EMLValidator.
	src/test/resources/moduleEML/eml-view.xml
	src/test/resources/eml-2.1.1-all-units.xml
	src/test/resources/eml-attribute.xml
	src/test/resources/moduleEML/eml-access.xml
	src/test/resources/moduleEML/eml-literatureInPress.xml
	src/test/resources/eml-party.xml
	src/test/resources/moduleEML/eml-attribute.xml
	src/test/resources/eml-physical-inline.xml
	src/test/resources/moduleEML/eml-protocol.xml
	src/test/resources/eml-access.xml
	src/test/resources/eml-physical-inline-cdatasection.xml
	src/test/resources/eml-dataset.xml
	src/test/resources/moduleEML/eml-physical.xml
	src/test/resources/moduleEML/eml-project.xml
	src/test/resources/eml-inline.xml
	lib/eml.jar (diff)
	src/test/resources/moduleEML/eml-literature.xml
	src/test/resources/eml-dataTable.xml
	src/test/resources/moduleEML/eml-physical-inline-cdatasection.xml
	src/test/resources/eml-protocol.xml
	src/test/resources/moduleEML/eml-semantics.xml
	src/test/resources/eml-project.xml
	src/test/resources/eml-spatialVector.xml
	src/test/resources/eml-text.xml
	src/test/resources/moduleEML/eml-text.xml
	src/test/resources/eml-physical.xml
	src/test/resources/moduleEML/eml-method.xml
	src/test/resources/eml-storedProcedure.xml
	src/test/resources/moduleEML/eml-entity.xml
	src/test/resources/eml-view.xml
	src/test/resources/moduleEML/eml-software.xml
	src/test/java/org/ecoinformatics/emltest/SaxValidateTest.java (diff)
	src/test/resources/moduleEML/eml-inline.xml
	src/test/resources/eml-offline.xml
	src/test/resources/moduleEML/eml-spatialVector.xml
	src/test/resources/eml-literature.xml
	src/test/resources/moduleEML/eml-physical-inline.xml
	src/test/resources/eml-entity.xml
	src/test/resources/eml-literatureInPress.xml
	src/test/resources/moduleEML/eml-offline.xml
	src/test/resources/moduleEML/eml-dataTable.xml
	src/test/resources/moduleEML/eml-2.1.1-all-units.xml
	src/test/resources/moduleEML/eml-party.xml
	src/test/resources/eml-method.xml
	src/test/resources/eml-software.xml
	src/test/resources/moduleEML/eml-dataset.xml
	src/test/resources/moduleEML/eml-storedProcedure.xml
	src/test/resources/eml-semantics.xml
Commit 6f3297eb54a9a6a3ed0dcbc2cb7b8650817c2496 by gitcode Remove whitespace in describes that caused validation error.
	src/test/resources/eml-datasetWithCitation.xml (diff)
Commit cc8e3edfdbfcf919337f112622215bdfb37bb5c4 by gitcode Fix XPath in validator to properly access all describes fields.
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 53b4d28972a27c41f1ccdfe1f910e76c4e2e8915 by gitcode Reformat Servlet for consistency.
	src/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
Commit 7e3a980057cd19acf8103c4e45b9a6d4182dc986 by gitcode Got rid of EMLParser, replaced by EMLValidator.
	src/main/java/org/ecoinformatics/eml/EMLParser.java
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java
	src/main/java/org/ecoinformatics/eml/EMLParserException.java
Commit dc3b5bb5acd7ee7094d63bb898c3998d043167f3 by gitcode Added getErrors() function to EMLValidator to return full lisst of errors. This allows a whole doc to be validated without pausing.
	src/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 3c60e3620b0604969ed3f84043f6af98bd8beb82 by gitcode Refactored EMLParserServlet to use EMLValidator now.
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
Commit 431d9b8d6d60e21b0720fb9b051e30734760ea26 by gitcode Update travis with new location of sample file.
	.travis.yml (diff)
Commit 26af18e106752cb75cc3f8f96984b3410dfbfb36 by gitcode Restore the EMLParser, exceptions, and tests. In the process, cleaned up some of the dead code, and modified tests sso that EMLParserTest doesn't fail on invalid docs.  Next step is to refactor EMLParser to use EMLValidator for EML 2.2.0 and later docs.
	src/main/java/org/ecoinformatics/eml/EMLParserException.java
	src/main/java/org/ecoinformatics/eml/EMLParser.java
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java
Commit dd04329037ebcfbfce2c5023b03c943cfd8961b4 by gitcode Clean up dead code and make tests work.
	src/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
	src/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
	lib/eml.jar (diff)
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
Commit d2d2137270c52ced3028ce5ee0cd72aed6530215 by gitcode Reformat parser code for consistency with NCEAS style.
	src/main/java/org/ecoinformatics/eml/EMLParserException.java (diff)
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit 13f28fc7e3e5ef39b1a069ae5e44dc4d2626dc3b by gitcode Begin refactoring EMLParser constructors. Partially complete, mostly consolidated duplicated code, and began setting up for the namespace comparisons.
	src/main/java/org/ecoinformatics/eml/SemVersion.java
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit a8a201082e0972de1d361ab235d5a1e1cb09e32d by gitcode Refactor EMLParsser to use EMLValidator. When EMLParsser is called, delegate to EMLValidator for versions of EML after 2.2.0.  Still need to handle String constructor.
	src/test/resources/moduleEML/stmml_dictionaryWithDefintion.xml
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
	lib/eml.jar (diff)
	src/test/resources/stmml_dictionaryWithDefintion.xml
Commit 64746ce005c0c15e9336d27d87c730f8f3300ed3 by gitcode Switch EMLValidator to using File param in constructor.
	src/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit 157ce351aa2b343a952a789c408e0296321e0a6a by gitcode Add new EMLValidator constructor to work on String inputs.
	src/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
	lib/eml.jar (diff)
Commit 4dbbb1558b3ac63552f074ad7db3916c11b6227e by gitcode When parsing a String using EMLParser, delegate to EMLValidator. Now EMLValidator is used for validating from the String constructor to EMLParser(String) in addition to the File constructor, at least for EML after 2.2.0.
	lib/eml.jar (diff)
	src/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit 200ec429283a0f6a85d7d6e27d3673f5e64301ef by gitcode Deprecate EMLParser, use EMLValidator instead.
	lib/eml.jar (diff)
	src/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit ff1642c7f35b55dd4e3d8361f6c653a5acc89830 by gitcode Added 2.2.0 to the namespaces config variable. This broke the tests because the schemas are not on ecoinfo yet, and so I added code to the JUnit tests to determine the current release version being tested and instead use the local `xsd/eml.xsd` file for that namespace.
	src/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
	lib/eml.jar (diff)
	src/test/java/org/ecoinformatics/emltest/SaxValidateTest.java (diff)
	src/main/resources/config.xml (diff)
Commit 515664e997937f9472d6eeec03641c58cde169f0 by gitcode Add env to build for 2.2.0.
	build.xml (diff)
Commit d7ad9925f20e2d3d2acb907dce1060a20101cf8b by margaret.obrien re-organized some text on primer: moved highights for each annot location to lists, broke up paragraphs.  Added place-holder sections for RDF examples, and checking logic. I think were gonna need a TOC
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5ed6bbdbf7088f2c98a5453cbda1c31707346b5c by noreply edit text and formatting Proofread text and fixed made changes to some of the formatting.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 9ef26e2dca2c6aad90ceb2de81f189d40fd9fea0 by noreply edited section titles
	docs/eml-semantic-annotations-primer.md (diff)
Commit 361fc30674a7e647163a5cac3b24bb65202c9644 by tao Add the dataone maven repository. Change the utilities version from 2.0.0-snapshot to 2.0.0. NEED TODO: change the version of the library from 0.9.1-snapshot to 0.9.1.
	pom.xml (diff)
Commit 723ebb41299a3eb519686f914b7879ba638a5ef0 by tao Change the version of this project from 0.9.1-snapshot to 0.9.1.
	pom.xml (diff)
Commit f7c6f35679b2766d72368a931642f442ee50a6d5 by margaret.obrien added examples of what-not-to-do and logical consistency
	docs/eml-semantic-annotations-primer.md (diff)
Commit 03f6aea88553516823dd11137ff17067910dc701 by margaret.obrien adding example graphs and refs
	docs/images/RDF_example_b.png
	docs/eml-semantic-annotations-primer.md (diff)
	docs/images/RDF_example_a.png
Commit ce8d4f2973dc4558670f0e12ade76f96a8868c5c by margaret.obrien headings have consistent levels; added more caveats
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5f002933d306f32d2927a850a24d9b45b0e206e0 by margaret.obrien finished the table of triple components
	docs/eml-semantic-annotations-primer.md (diff)
Commit ee6d0d1e8e71456d027a4d7011a21dcf5a235ea1 by margaret.obrien paragraph describing what an RDF graph is
	docs/eml-semantic-annotations-primer.md (diff)
Commit ac84b7a4fe9200dad0812b86b7a5ab4b2ed9b9b6 by margaret.obrien ok, had to fix spacing around pngs
	docs/eml-semantic-annotations-primer.md (diff)
Commit 308bf5c3bcb8f6f835ac64b6bcf4695f312d03d6 by noreply fixed typos, minor format changes Fixed typos, made minor format changes.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 675f8fd8aad5f60d31a3797f10aa04b5286c301c by noreply add RDF/XML examples Added RDF/XML examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4a2b8d31c8ed2df24af0b2df485be94d59eb5a8d by noreply fixed typo and formatting Fixed typo and formatting
	docs/eml-semantic-annotations-primer.md (diff)
Commit e4f59e573baf8380cb58be39fbdfa03b83102f36 by noreply add terms to glossary Added terms and definitions to the glossary section.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 378da2c9a0bb89f1b839e7a5c23509a974a3e9e4 by noreply add URL vs URI information Added a section explaining the difference between URIs and URLs.
	docs/eml-semantic-annotations-primer.md (diff)
Commit df0d06c0930fd67dc503dcce68eaa3a2d9436923 by noreply fixed RDF examples Added closing brackets to the RDF examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit df934753c7771cb6cd49805e108aa754beac6ce9 by noreply updated primer, but Steven had also made revs made some changes to top 65 lines or so, especially regarding setting up concrete example of an RDF triple, and talking about URI's and URL's
	docs/eml-semantic-annotations-primer.md (diff)
Commit 46c14108f4fd3609ad62a6a32c128934c9e13890 by noreply added the glossary terms again, fixed typo Added back the glossary terms and fixed a typo.
	docs/eml-semantic-annotations-primer.md (diff)
Commit a6fc613966c7c30146e69ffad29970cca131db61 by noreply fixed RDF examples Fixed typos in the RDF examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit bf107e28a871de4d26579c64c0a646ae8e04fa86 by noreply fixed formatting Made some formatting changes.
	docs/eml-semantic-annotations-primer.md (diff)
Commit f589d4df9858ab9e1f420236333a43c73e676aae by noreply some further revs to intro section tried to make intro section a synoptic statement of the motivation and approach for enabling semantic annotation of EML, with a simple concrete example of an RDF triple, and how URI's provide very powerful annotations onto EML elements.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 0ee71ae45b163c907b4f238de49f4cadf781e20d by noreply fixed example JRN URL to resolve more usefully
	docs/eml-semantic-annotations-primer.md (diff)
Commit aa11610f51e9b4f945834873e87e3f5e69026ceb by noreply fixed JRN dataset URL again... ... to resolve more usefully. It is tough knowing which URL denotes the data package due to lack of content negotiation...
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Commit d58deb57e45c01efdac1f2096070a9644a676029 by noreply small fixes
	docs/eml-semantic-annotations-primer.md (diff)
Commit d728810ad1d35a4d6521ff42b73e3236385bc20e by noreply changed predicate URI in first example the RO predicate for "located in" way more popular than PATO one
	docs/eml-semantic-annotations-primer.md (diff)
Commit c6077132d7fab8725e693aa9d29e82fd4b26493e by noreply set subject (a jrn dataset) to pasta id. agree with @mbjones - this was a web portal URL. the pasta ID is down the page a bit. should we consider the DOI here instead?
	docs/eml-semantic-annotations-primer.md (diff)
Commit 64cfdd8c9b53f0d528be0528878256dc28ae46d5 by noreply added link to annotation primer
	docs/eml-220info.md (diff)
Commit ce18e96624370cb6bc78c95ee4faaa486ec828fe by noreply added @cboettig's ref on tidy and R
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4f7a1bf31c5e4f0c0bfee6c876e9475d53207e73 by noreply added more detail to the basic triple example described a bit more detail regarding the simple triple example introduced early in the Primer (ca. lines 50-65)
	docs/eml-semantic-annotations-primer.md (diff)
Commit 157b6717119f03285ac799a91dafe657cd0616c1 by noreply small revisions to intro wording trying to further clarify document in lines 25-70
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1e4ea462764644a78bc419d2ddae8d83e54d04eb by noreply minor edits
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5c863c13b19d0c0e0d12db574689fc4373aafefd by noreply condensed annotation explantations Condensed the sections on top-level resource, entity-level, and attribute annotations.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 076ddca29073da85d469c2e4227c5cab2320c8ce by noreply edit eml/annotations section Edited the eml/annotations section and removed some repetitive text about propertyURI and valueURI elements
	docs/eml-semantic-annotations-primer.md (diff)
Commit f6fe67a9c111ea47a22309ee4bcd2a803ad131a9 by noreply edit eml/additionalMetadata section
	docs/eml-semantic-annotations-primer.md (diff)
Commit 407f160af122c8abdd2af7c094aaf7f1efa31e09 by noreply removed semi-colons
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Commit 27668e9aab26b0b7841aedda1a106af7fb60408f by noreply try commit after Chong commits minor changes
	docs/eml-semantic-annotations-primer.md (diff)
Commit 8489749daecc7dd8b27a2e6dcfa741ad6740e566 by noreply grammar fix minor
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Commit 742d82d0e77f0135312a8180b749b1d71aa32cf7 by noreply fixed URI to resolve
	docs/eml-semantic-annotations-primer.md (diff)
Commit f1a559bec51cdf38ec4266be087e23c9f17c551c by noreply removed namespace prefix prefixes allowed in TTL but not N-Triple -- but N-Triple is simplest syntax to understand so keep
	docs/eml-semantic-annotations-primer.md (diff)
Commit f707d2c5bc367ec89591e2ea9c95e5a7d8505dfc by noreply grammar
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Commit db251870d950c3a6d223a9eb43d22182b74ff6c7 by noreply grammar
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Commit a5c844369e49354f9b606e27ef81f338c57d2d50 by noreply clarifying object property is a predicate ...trying to avoid confusion about words: subject, predicate, object-- e.g. using "subject" as a predicate, or referring to a predicate as an "object property"-- even though these are valid uses...
	docs/eml-semantic-annotations-primer.md (diff)
Commit 8562d4f571266ca52aa835fbd7b43c0d4dea4556 by noreply updated subject URI in initial example
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5f82b3b73aafccd9089aeb3e9da6f39f48d3abce by noreply changed eml/annotations example
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4d4d76a1a64eb3f8ee9551c7acc0d34181bacc6b by noreply added comments to intro Addressing Margaret's note about whether to separate RDF/semantic annotation intro from rest of document.  I've added sentence to recommend those already understanding basics of Semantic WEb to skip directly to section on how to embed annotations in EML.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 6a24af550880c5b2aed4e30da1a1d807b36048c8 by noreply minor order change
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Commit a22100b7012604f1b4fcca101e810643465dffa6 by noreply add parens
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5a06c17b8f63921e386d290a710702621c048e58 by noreply introduced resource/property/value terms in intro ...since this was our choice for labelling components of triple in the EML annotation syntax...
	docs/eml-semantic-annotations-primer.md (diff)
Commit 84c9683dd31c2f8e5ecbc261f41c8df09bfb1a76 by noreply added terse note about JSON-LD vis-a-vis RDF lots of people seem confused about this and don't know that JSON-LD is generalized RDF
	docs/eml-semantic-annotations-primer.md (diff)
Commit f579ab49d6a8b728053ec6e9e3ded66ab5bc1f06 by noreply changed Example 4
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1c6b5bb011bb516653199092f917420de1c59323 by noreply changed Examples 1 and 2, fixed typos
	docs/eml-semantic-annotations-primer.md (diff)
Commit 5de6ca6abdb27c54b41cd9978e87a6c5c7a61586 by noreply edit Logical Consistency section made edits according to Bryce's feedback (mostly)
	docs/eml-semantic-annotations-primer.md (diff)
Commit ab96e6b419e88f3b5a15286bd16d31d52012dce5 by noreply edit RDF graphs section
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Commit 1d18e570c927c2189ebeecfd875aae84fa313166 by noreply edit RDF graphs section
	docs/eml-semantic-annotations-primer.md (diff)
Commit a0ab302502547d4e2ff7a07288f36d542671555a by noreply fixed typos
	docs/eml-semantic-annotations-primer.md (diff)
Commit c79668d001efac3a17b09b834b68f7c4d422e184 by noreply removed table mapping triple to EML Removed the table that mapped each triple component to their EML analog. Don't think it added much more than what is already stated in the text.
	docs/eml-semantic-annotations-primer.md (diff)
Commit db7c8d6ba37d0a4af3d8eefed132f97cd717467e by noreply minor edits to the intro
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Commit 1fadecbfc000c97e183a12f01a2d5d1ea710585a by noreply minor edits
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Commit 14c45c59ed83a3a6448d9bcf7b1837d4cbd6af9e by noreply shortened intro
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Commit 6dfbe4d3e7ecb4e5f038f46106c0a0dd352dfe8f by noreply minor changes still working on it
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Commit fce95009d12d4c764d9f8500b35e53b9da5bd229 by noreply mark's edit Have placed a bunch of side-notes in SLACK for Steven and Margaret perusal
	docs/eml-semantic-annotations-primer.md (diff)
Commit 887c7a8749525cad2c7253fb1d2fc5312192561d by noreply added small explanation about OWL
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Commit 4cb3eb93d098489322055a1fb4f75eb342ff1da2 by noreply testing a footnote
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Commit 27c36a1404435eec1a6d2e657a91732b5f43470c by noreply footnote, maybe
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Commit 9972508f20446ada90b79dc2103c5589a2897254 by margaret.obrien added a group of questions to the FAQ. all pertain to the semantics primer
	docs/eml-faq.md (diff)
Commit b695b0362801b2ed387c455a89831e5a458740ed by gitcode Update README. Fixes URLs in the list, adds ORCID to the simple example, changes the developmet section to reflect new practices, adds detail in the history section, and updates the fuding section.  Add a XML doc that ensures the README example validates.
	README.md (diff)
	src/test/resources/eml-simple.xml
Commit a0150a1cc9f7c7080f562e488f10da26b296b157 by gitcode Fix validation error due to duplicate id.
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	src/test/resources/eml-simple.xml (diff)
Commit 2c674983242d8111561c7e723b803483f7184d79 by tao Add the class fields language, abstract and keywords.
	src/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 572441feea47d97e7c1e6e6f4ad478aa237374d2 by tao Add the code to parse and store keywords, abstract and language.
	src/main/java/org/ecoinformatics/datamanager/parser/generic/GenericDataPackageParser.java (diff)
Commit 0b6ef3bd69fdc3a0ecfe2a0fcda5cff47edbfc2e by tao Add test code for new fields.
	src/test/java/org/ecoinformatics/datamanager/parser/generic/Eml200DataPackageParserTest.java (diff)
Commit a1bf8f53905113bc0f4fca26f9f9ca7543c30844 by tao Bump the version to 0.9.1
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Commit b706d7d41c6c66553a7bbabe8cbfc75a130efd57 by tao Add the code to parse the userId in the party element.
	src/main/java/org/ecoinformatics/datamanager/parser/generic/GenericDataPackageParser.java (diff)
	src/main/java/org/ecoinformatics/datamanager/parser/Party.java (diff)
	src/main/java/org/ecoinformatics/datamanager/parser/UserId.java
Commit 3a5bb4f677f3ef907f29136b93c12c2006318399 by tao Add the publisher and pubDate to the parser.
	src/main/java/org/ecoinformatics/datamanager/parser/generic/GenericDataPackageParser.java (diff)
	src/main/java/org/ecoinformatics/datamanager/parser/Party.java (diff)
	src/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 08dc124c198de8b7cec03a5fe359d0afed65876b by tao Bump the version to 0.9.2.
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Commit 8d8d35cfc35b385fb938f2f11200f84a06112b51 by tao Fixed a typo on the word "abstract". The abstract is a keyword on the java code, somehow the editor auto changed the word.
	src/main/java/org/ecoinformatics/datamanager/parser/generic/GenericDataPackageParser.java (diff)
	src/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 0dc25cdbb87737529345cdf41b2daaba87d4c518 by margaret.obrien reorganized major sections. TO DO: links from text to appendix
	docs/eml-semantic-annotations-primer.md (diff)
Commit 9e8e502c804f374d6a1a0dcb4a280861e383eb25 by noreply moved asterisks in links
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Commit 93484da1e1e1890434f137b8662b1fae543f3fc8 by noreply moved anchor tags to above heading
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Commit 97e1ab18fc90b59f8ef20ea3d378aa2e4ec4a983 by noreply moved from some more anchor tags.
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Commit d168e1116e01ce8f23cfaf886e2093b56298ad5e by noreply cross-links between examples and their rdf graph
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Commit b543d50fcda1d4a880b04417bc047ab58de927ae by noreply more cross refs can't seem to test these in O2!
	docs/eml-semantic-annotations-primer.md (diff)
Commit a16438c3be477c684018cac0631be8ae69c264b8 by noreply moved rdf for example 3 to the correct place.
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Commit 8b5be8b7b7ffe3040d8a69b4700cc9f17a2e9d82 by noreply extra asterisk removed
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Commit 7960ff60d156633b2def81c4a431abd460973867 by noreply graph for example 3 lowered in hierarchy to match example 4 graph
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Commit 0e7b1361e878328cb91a222d6f4e4f8061c2a316 by noreply a few leading spaces removed.
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Commit e84580646d7c0f38fc77328f5ddfecbee0aa995e by noreply broke organization para
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Commit 466d1b92efa09d4f215c9d0fbb7a7e70b509fe6d by noreply removed subheaders in intro
	docs/eml-semantic-annotations-primer.md (diff)
Commit 338e8182ef3615d957c30580fa02dd051a052a29 by noreply add to organization para describe EML elements as code blocks.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 9613a789c396e92041c1ea3b2b070f24b0be1dc7 by noreply deleted extra glossary ref
	docs/eml-semantic-annotations-primer.md (diff)
Commit 902fcd2448dedf701974d4248bf5c69884a4dc72 by noreply links to example rdf in logical consistency sect.
	docs/eml-semantic-annotations-primer.md (diff)
Commit f3a05384216c999d3078220064f51ad27a851081 by noreply checking for logical consistency section a few more words, to be clearer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 0f25475542c4f307acd8a8e80336467f9145812a by noreply turned simplest triple into a code block
	docs/eml-semantic-annotations-primer.md (diff)
Commit c115e8c975a8188196ea2411971a3fdd0f7d440e by gitcode Fix typos in README.
	README.md (diff)
Commit 85a789d312ba6bef513eb2456ff783f660bc504e by noreply added Q:A answers about what is: "dereferencing", URI vs URL, and SKOS
	docs/eml-faq.md (diff)
Commit 53287f2aa1e44b2fcbe7ce81580361ebddbfd481 by noreply Answered Q:A section about SKOS, RDFS, and an example using rdfs:label Still working on good example of an RDF graph...
	docs/eml-faq.md (diff)
Commit 2f882bcf0f16f3d9c5d7009661a3a1af97cd41e6 by noreply answered questions about interpreting an RDF Graph, and if tools are available to help semantically annotate
	docs/eml-faq.md (diff)
Commit eed752f3a977321a6d3729b6b58a62de0f1803a5 by noreply fine-tuned text on answer to "what does the RDF look like?"
	docs/eml-faq.md (diff)
Commit 04c52274b749b49ecfea1ad16829dcc0cd7bb99d by noreply small grammatical fix
	docs/eml-faq.md (diff)
Commit 590cf5774aae9a7d6197cac59156fdf8a7e8a140 by noreply removed extra newline and parentheses in intro
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4f384205d6e05f70c62a97856d8f1a9619c1d643 by noreply added comments Added 3 suggestions. These have been placed inside brackets and have "SC" at the beginning (e.g. [SC: ... ])
	docs/eml-semantic-annotations-primer.md (diff)
Commit b7ca87288c43123965d57d1c2423bebaf9fd1317 by noreply added comment and fixed misspelling Added a comment about defining acronyms, in brackets with my initials (i.e. [SC: ...] ). Also fixed a misspelling
	docs/eml-faq.md (diff)
Commit d0d35c8a73110f965910e1da9c038e7d8a3f25e6 by noreply expanded acronyms Expanded the first usages of IETF and RFC.
	docs/eml-faq.md (diff)
Commit c1a8215332948e74b3b4e938507e7a59a54f0fbc by noreply updated faq to use a schema.org "predicate"
	docs/eml-faq.md (diff)
Commit 315726bffefd5a76a4147973f817d64ebf93ea7e by gitcode Clarify use of resource titles and translations Fixes #336
	xsd/eml-resource.xsd (diff)
Commit 09ffc6b04b01fc8f2b707ce17ebe0b0196ecf123 by petridish Add support for id, system, and scope attribute on annotation elements Resolves #335
	xsd/eml-semantics.xsd (diff)
	src/test/resources/eml-with-annotations-with-ids.xml
Commit 7c766034319285f7def2bd8325ed75435b85c73f by noreply small addition to dereferencing text
	docs/eml-faq.md (diff)
Commit 28a9f2980086442880d1d11312323c0c075ac6d1 by noreply small rewording about diff among URI/URL/URN
	docs/eml-faq.md (diff)
Commit 84335d8f920bc2146c246069995a3fb50c688b0a by noreply a few more minor grammatical edits
	docs/eml-faq.md (diff)
Commit 5983a1bbed454296befe92f27e469cb4112af286 by noreply update contributors list Following up on #309, I added myself and a placeholder for @srearl
	docs/eml-contributors.md (diff)
Commit 8991dc35a5e61e45ee92560033920ecba8257316 by noreply update citation Added Steven Chong to the citation.
	README.md (diff)
Commit 33384b48b3278eaf3e71bebf90fbd70badf01c3d by noreply added simpler para 1; blended in para 2
	docs/eml-semantic-annotations-primer.md (diff)
Commit 978ef99abb7d00c25acbfd27b18b6d213919b24c by margaret.obrien Update eml-semantic-annotations-primer.md address https://github.com/NCEAS/eml/issues/340#issuecomment-515168433 items 1, 3, placeholders for glossary entries (item 6)
	docs/eml-semantic-annotations-primer.md (diff)
Commit dd152a1720545b5233cd5d466e96d06e7f1963d7 by margaret.obrien Update eml-semantic-annotations-primer.md typos, section header syntax.
	docs/eml-semantic-annotations-primer.md (diff)
Commit ea64fd6eecb952ef48f704c4ff072e63950b9cbf by margaret.obrien Update eml-semantic-annotations-primer.md simplified introduction further. no arcane terms till paragraph 4. woo hoo
	docs/eml-semantic-annotations-primer.md (diff)
Commit 01d352ed07c7a8c17012f02d146ba2794fd2ddd6 by gitcode Fix whitespace problems with markdown headings in semantics primer.
	docs/eml-semantic-annotations-primer.md (diff)
Commit 1ef70690115244a304360512172bea9e57e5d233 by margaret.obrien task 5 done. started on 4 (example text)
	docs/eml-semantic-annotations-primer.md (diff)
Commit f7337403dd5fa810173cd94023719c803afd65b6 by margaret.obrien few typos and whitespace
	docs/eml-semantic-annotations-primer.md (diff)
Commit cc1b085689598be0eedc758508caa58459dd96c0 by gitcode round out contact info for searl
	docs/eml-contributors.md (diff)
Commit 0644cf2602f2f962e2d34b5ef060345fa38a5ac9 by gitcode Ignore project config files in git.
	.gitignore (diff)
Commit b1b77f755b9e014bd437e21c6f2fff5085bbbb63 by gitcode Update EML schemas to use new https-based namespace. The new namespace is of the form `https://eml.ecoinformatics.org/eml-2.2.0`.  XSD files, stylesheets, and test documents were updated. Work related to issue #341.
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	src/test/resources/moduleEML/eml-literatureInPress.xml (diff)
	src/test/resources/citation-sbclter-bibliography.232.xml (diff)
	src/test/resources/citation-sbclter-bibliography.50.xml (diff)
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	xsd/eml-entity.xsd (diff)
Commit 808fb1f96ac1d7c4dd9bde8d8b4a6be3f87f4af4 by petridish Add Oxygen docs to book and tweak the book build I built the Oxygen docs with our build script and commit them here and also integrate them into the Bookdown book with a custom build script. The new build script does two things:   1. Renames the HTML output of ../README.md which we want to use as     the index.html of the book. A custom build script has to do this     because Bookdown tries to use the top level header of the file     as the filename but we want to use index.html so the book works     nicely.   2. Copies in the Oxygen docs into the build book
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Commit 33d7f6b10d73f3c9eafd79429f854c1394716f4e by petridish Fix an issue with my approach to making index.html Bookdown still wants to use the README.md title so I did copy rather than a rename so both HTML files exist.
	docs/build_book.R (diff)
Commit 4748836b11f2bdb0e6117a9be8500c277944b215 by margaret.obrien restructured text for examples 2 and 3
	docs/eml-semantic-annotations-primer.md (diff)
Commit bb59916052818ead5eef0e39c714a77b4dcb66f5 by margaret.obrien restructured text for examples 4 and 5
	docs/eml-semantic-annotations-primer.md (diff)
Commit 2af2458159335258952a9b21479ad6e6555ef30f by margaret.obrien entry for each of 8 vocabs in the examples.
	docs/eml-semantic-annotations-primer.md (diff)
Commit a539b5885d7a9fe5f57e5649fc79129d74bf6b8c by noreply fix typos and links
	docs/eml-semantic-annotations-primer.md (diff)
Commit 4e39f575910d7be25a9d31958a4979b7c6e27d02 by noreply edit intro
	docs/eml-semantic-annotations-primer.md (diff)
Commit ada99fc0711297bb62fd74dd26cc6dfea4f9cf6c by noreply fix links in intro
	docs/eml-semantic-annotations-primer.md (diff)
Commit 28d010f21f5328acf9ccfbf0f6d8e83aeeb82a22 by noreply edit file name Changed the file name so it is consistent with the title
	docs/eml-semantic-annotation-primer.md
	docs/eml-semantic-annotations-primer.md
Commit 59573e094ec2f0d553b607b7dc6ff0e6fa2c59e2 by noreply edit 'Organization of this document' section Fixed links and typos
	docs/eml-semantic-annotation-primer.md (diff)
Commit dc1468bb44c2494b9b3fd5b55611c303e40ab73f by noreply edit Semantic Annotations in EML 2.2.0 section
	docs/eml-semantic-annotation-primer.md (diff)
Commit a37b637416060ca6c2a921d7e06871eaafa9e359 by noreply edit top-level resource section
	docs/eml-semantic-annotation-primer.md (diff)
Commit bdd5e51f7a784721b1f6151eea8274d25f26cd2f by noreply edit example 3
	docs/eml-semantic-annotation-primer.md (diff)
Commit 908cb0f00a1581bae6d88188a6f06b434ccc9ed0 by noreply edit example 4
	docs/eml-semantic-annotation-primer.md (diff)
Commit 5bc6e953ab9719798082a8d0bd273563611c32fc by noreply edit example 5
	docs/eml-semantic-annotation-primer.md (diff)
Commit 12340eada97f0c3deffa9f427841e55e094bef27 by noreply edit "semantic triples" and "URIs" section
	docs/eml-semantic-annotation-primer.md (diff)
Commit b7f66ab925ea7d0506a74cf5ecd9e1be1dd2bd5f by noreply edit URIs and RDF Graphs sections
	docs/eml-semantic-annotation-primer.md (diff)
Commit c1c9fade2aa7f96e71818aaa610c9dea8de3a377 by noreply put glossary terms in alphabetical order
	docs/eml-semantic-annotation-primer.md (diff)
Commit 6ba004469ce2f2def6881d54fef1ba728c3620c2 by noreply edit glossary and example vocabs
	docs/eml-semantic-annotation-primer.md (diff)
Commit c39137a07d7b6510f88d93dda15b35c08f9f9d56 by noreply edit example vocabs
	docs/eml-semantic-annotation-primer.md (diff)
Commit 9dcaee12907dccd961451e6e2ba8f6dd5671ee26 by noreply add the FAQs from eml-faq Copied and pasted the FAQ here because the info about semantics didn't really apply to EML.
	docs/eml-semantic-annotation-primer.md (diff)
Commit c40bb61dac0e7216419fa6ab5784ca5f3f8096af by noreply remove semantics content Removed the Q's relating to semantics because they were outside the scope of this FAQ. The Q's and A's have been transferred to the semantic annotation primer.
	docs/eml-faq.md (diff)
Commit 24e3cda950131573f74ba50e06961f21b35bee23 by noreply fix Q's format and wording Made Q's bold and changed the wording so they are in the form of questions.
	docs/eml-semantic-annotation-primer.md (diff)
Commit 20ed38b769efee5480765000d47316e3eaf9a6e8 by noreply edit FAQ, add link to FAQ
	docs/eml-semantic-annotation-primer.md (diff)
Commit 4bc49a99451b9e867c084d10441908224d6ab52f by noreply edit FAQ
	docs/eml-semantic-annotation-primer.md (diff)
Commit 3af0cd035e4966a9aead7d2bc364ebd1fb62fe96 by noreply add FAQ to doc organization; add vocab info
	docs/eml-semantic-annotation-primer.md (diff)
Commit b853dd463cd7a49c021e68051effcbee6c8215ed by noreply add definition of glossary terms
	docs/eml-semantic-annotation-primer.md (diff)
Commit bb38ee013c7e308a177751503d601a6d1f6e1022 by noreply Update eml-semantic-annotation-primer.md split two FAQs into multiple paras.  added a note about DC
	docs/eml-semantic-annotation-primer.md (diff)
Commit 8a12538b077da9025ae7267c72aabdfa3db683fe by noreply update semantic annotation primer file name Changed the file name to match the title
	docs/_bookdown.yml (diff)
Commit 9ec92d160879de63df635c147698a3bc49ffff48 by noreply update document organization section; fix typos Removed the letters and roman numerals from the doc organization section; fixed typos in the FAQ and external vocab section
	docs/eml-semantic-annotation-primer.md (diff)
Commit 8054b9916a9e5237b6122af4afb0c11ff0789f76 by margaret.obrien linked text to FAQs. added one more FAQ (re measurements). added definition for "knowledge graph"
	docs/eml-semantic-annotation-primer.md (diff)
Commit 63aa5b6627e0355363da1c7579317e0e1b3d20a0 by noreply edit URIs section
	docs/eml-semantic-annotation-primer.md (diff)
Commit 501a466b7640e2f18b6f143b24ba7d30e9f46cf6 by noreply proofing and small revisions-- still working on this.
	docs/eml-semantic-annotation-primer.md (diff)
Commit d9b88f41e3e05ddb924bef751b79ea194a0f3431 by noreply continuing with revisions to Sem Primer I've made some changes so when I'm through (hopefully today) will need Margaret and Steven to re-read and discuss before passing on for more extended review/commentary
	docs/eml-semantic-annotation-primer.md (diff)
Commit da324976b116c7f337de1a034f66782f1fa4f2e5 by noreply saving changes thru line 100 i lost a bunch of edits earlier today because I did not commit my changes, so will save intermittently to prevent such loss again.
	docs/eml-semantic-annotation-primer.md (diff)
Commit cbd2be8ae3c823c9da4c074fa447838423665a53 by noreply edits up to line 200 committing to avoid losing edits
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Commit 39341e860912b2cb3c96b415a38c9b387b135780 by noreply edits up to line 267 Done for today.  Have embedded some comments using [[ .... ]]
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Commit b71c7eb32ca26cff830f806f738a9277346a7e01 by noreply final changes for today
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Commit 9079cdb032339a500fc4f5dc6c78bf0863032910 by gitcode Try to fix Travis build by switching to Java to get ant installed.
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Commit 1a8bd26ce2cf853fdc5e6c230872720d87d560db by gitcode Add ant to APT install in Travis.
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Commit c34c723f40470c546d916ca261431bdc1e254f82 by gitcode Add ant-optional to the Travis build for JUnit support.
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Commit 6680b1a727a306e7d142a7874a865d04451e9354 by gitcode Have JUnit prinnt test log to console for easier debugging.
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Commit db3f7481fc00b15bc2e35c9eceac6918da8c9aae by gitcode Increase memory to see if that is the StackOverflow error.
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Commit 6724b5fb697d0f4a1bc2754771e47b2818faea12 by gitcode Try bionnic to get a newer version of ant than 1.96. Seems that 1.97 fixes a common StackOverflowError.
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Commit c7e0ec7cd3790048f809e1a306a7275b6fdaf35c by gitcode Try snaps rather than apt under bionic for package installs.
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Commit 9e4b57fee4c019722c4aabf80b782f6159e66df9 by gitcode Switch to using apt install directly, and skip the maven build.
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Commit f4e17ef0c72ade50ef9ba6c67c5e918ad411dfa7 by gitcode Try updating the apt sources before the install.
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Commit dcab3a3537423daae842913c03d807640ed5eb87 by gitcode Switch back to xenial.
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Commit 4b777307fd4f31113fde83d6d002cde27abe19cc by gitcode FIx target typo to 'before_install'.
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Commit a4f533e2c7eb96d26640d4a1aae22755acc4d682 by gitcode Annd switch back to bionic now that apt is installing properly.
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Commit 13dc82941c6b67d36155dc24b1386cec2558f46b by gitcode Add custom downloaded version of ant (1.10.6) instead of what comes with xenial (1.9.6).
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Commit 81ebeb21b43e8fefe85395e6d62668b49f0df92b by gitcode Fix path to 1.10.6 download.
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Commit 7a4ed400d41d5bbc362a60ec82e1163220af443c by gitcode CHeck if ant exists, and if not then download it.
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Commit a767313da46fe2a15e05310ecd6e6eff0ed69c6d by gitcode Add env var for Ant version to Travis.
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Commit 6debb06818e04515a80921375950eb291bf9f3b7 by gitcode Temporarily disable cache.
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Commit 86d4feb231f8b006c00f0f14e61f540564f2bff9 by gitcode DOwnload Ant if the directory does NOT exist.
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Commit 2828b7c3ec93f8ae6bfaaf633d1db917a1d372be by gitcode Try a larger stack size. See https://issues.apache.org/jira/browse/XERCESJ-589.
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Commit 051ff538403393369abf49147d5ecf74e330aecc by gitcode Cache busted?
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Commit db125705254d568463b647c375757bcc992b7bc1 by gitcode Upgrade xerces and xalan to see if that fixes the StackOverflowErrors.
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Commit 8285de26d7933faec5d7b4410659ef9823aff30f by gitcode Pare back travis now that the xerces upgrade fixed the build.
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Commit 3647e52002e0dd6d321ebbe9d076ae15fb659d6e by noreply modifications throughout, now up to line 383, "URI
	docs/eml-semantic-annotation-primer.md (diff)
Commit b6d3d9a6659eef6b7526fc25ecc32921a134b944 by noreply modifications throughout, now up to 472
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Commit 072f54fdfd9998a54fede9ae7677b31553259269 by noreply up to 644
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Commit 955b3a8162c300128c386adc28f86e0c4f7d7be5 by noreply finished full pass-thru edit of semantic annotation primer
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Commit 05ea93e2e1b4fcb4acb5557a7ef4552829f872a7 by noreply minor edits to intro
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Commit 5f6393138e8a457139a579479b2455df43cb55bb by noreply minor edits to intro Make wording more consistent
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Commit 70dc8fe346a4e5e56d79b96d99161e83b14b6167 by noreply superficial edits
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Commit a4db47a32f0d24fad6683e72f1f0c83fb7229489 by noreply more superficial edits
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Commit 7116bd33a3100964d0a5fb740afdbe1366e43f3b by noreply yet more superficial edits
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Commit b729a2a426f748b365d6248d84c96d7990ab7413 by noreply updates to text, in light of warnings about `id`s in EML need to be either unique within a document, or properly scoped and referenced
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Commit c15156389dd5fa717d8ded33757a1a027c00bb13 by noreply update Examples 1 and 4
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Commit 410f2eb1683c6e860f9fd76f29a70adfb12b20f8 by noreply update examples with Eric Seabloom's info
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Commit c0bbe1d0b351ffaf91ecb229283ff3d461cd674a by noreply make examples consistent
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Commit 8068bb2e7fb0274652f99bbfb9a563b08d410a1f by gitcode Force copy the index.html even if it exists.
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Commit 19eaa6eb2770ffc088aa1a81971245f648dd6113 by gitcode Switch to using "dist" as the subdirectory for the built site and ditribution files.
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Commit c7937fc6e7392e7438368623a04b95e8408378c2 by gitcode Initial dist subtree commit
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Commit 13425cbbe04161063686e104ad7739feb34ed86a by gitcode Add shell script for deploying the built site.
	bin/deploy_site.sh
Commit 51e2e2d570490365689ad40ddf8dd6f9f9bcb365 by gitcode Move dist directory to top level.
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Commit 8e9393ae1e4db105b602effffa54ee916fca5237 by gitcode No longer need to copy the schema docs. They are directly generated in place.
	docs/build_book.R (diff)
Commit 3704c5365343eb8cb602ac8c5e70a1eab07f13bb by gitcode Deploy from the top level dist dir.
	bin/deploy_site.sh (diff)
Commit bcd56c57f9e70e17675450f8967c3e8f5d2a1dcc by margaret.obrien initial edits to glossary and FAQ. added glossary entries for jsonld and iri. shortened rdf-faqs. reworded Q on dereference
	docs/eml-semantic-annotation-primer.md (diff)
Commit 2b6a46dcedc9b84539c89142f8b25bfed41b88a4 by gitcode Reformat for proper indentation.
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Commit e83ce11ddb2674f314803f49b71e98359739f80f by gitcode Fix 2.2.0 namespace and add examples.
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Commit bfecaeb9028dd0d2969ccf5f86ff481307a86653 by gitcode Regenerated schema docs with proper ns, and added to book. Current schema docs are now in chapter 9 of the book in an iframe, but the frame is sized incorrectly to properly display the pages. Look into adjustinng CSS for that iframe.
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Commit 59255dc9bfe6d864a90eaf9067ec7fac75d7dc12 by margaret.obrien Introduction only: ids in EML with link to new FAQ. added short section on wording conventions (musts vs shoulds). small wording changes
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Commit 946703295a010533e588ea915b63034815cd368b by margaret.obrien replaced the extra paras after examples 1-3 with place holders to a FAQ (likely to have links, eg to URIs). will write that next.
	docs/eml-semantic-annotation-primer.md (diff)
Commit 03894761bbf2cd988c0257bb790674ccca196d6f by margaret.obrien typos only
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Commit d48f1768aab1add887b041862cea2e4baeca080d by margaret.obrien replaced people graph, correct person
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Commit fd16cc81dfcb3dd31dc0a39965adc91ecd47751d by gitcode Update 2.2.0 namespace in additional files.
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Commit c888504202e2c61e45daff88bfbde561fec57eef by stevan.earl editing annotation section to improve readability
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Commit e45ffb16ebe835360f6e90338025da3c2892d988 by margaret.obrien set to false: detailsSource, detailsUsedBy, set to true: includeLocalComponents
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Commit 2649bdbd692e58a2cea0d991d160e04958729469 by gitcode Update schema doc html files with new configuration.
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Commit 5ecf8e05ee95cf450c05035ec99b4f0ecb0dc41d by margaret.obrien section headers and text for examples 3 and 4, per Stevan.
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Commit ef5e146b191f92f191c477ff23617582ab878268 by margaret.obrien added an intro to grouped annotations per Stevan
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Commit 5fd5310bd1e3ed2030ec4de1db8a1b057cb5fed0 by stevan.earl editing the annotations primer
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Commit 0ecf9cca87d08a97c2e56e360011da1cc034a3be by gitcode Fix spelling.
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Commit c62f285b7d155b930ae0291fbfead0e12978f7a7 by gitcode Updated instructions to build and deploy the website.
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Commit bc8d995b3323b9008183b262a49b5d3b3a64fb1a by gitcode Renamed about file.
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Commit 4c042faa8ffbe0c7f7b3bce72fb0acbd4c7f1c89 by gitcode Fixed book filename and commandline switch.
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Commit 22c5b66e6f5eee9c8cadae50ddd03198d587651b by gitcode Fix chapter link to file.
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Commit 7d846bfb98843c2b5346c93e51bd129049e2eb96 by gitcode Added coverage section to sample with taxonId filed for validation test.
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Commit 1f0713c4d50193d4cc181b765638998d2ed6f84c by gitcode Updated contributors, added ORCIDs, cleaned README links.
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Commit 2e32a3ca97f08476fa4f95a7c1b3e336ca0fe11f by gitcode Updated ORCID links.
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Commit 0720f11b6cf89a5174d18c1aa2110509d8316e0b by gitcode Fix nav menu to remove extraneous link.
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Commit 9f773653182756f48f754326cc99ec5dc5a822ce by gitcode Update validator to use new schema namespace. Also, fix the validator build, and add a utility shell script showing how to run the validator.
	build.xml (diff)
	lib/eml.jar (diff)
	bin/validate.sh
	src/main/resources/config.xml (diff)
	src/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
	lib/runEMLParser
Commit 6960c4be05cda839ea5cde88a0fdef89632145f9 by gitcode Edit the EML 2.2.0 changes document. Restructured to use headings rather than Q&A.  Also updated various answers, and the validation section.
	docs/eml-220info.md (diff)
Commit 880f4ee0613ea1627dd70ca204de69c8fb098fc5 by gitcode Updated book chapter on EML 2.2.0 changes.
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Commit d459e48f6913b721d16f5cfa9e756ca96fe42858 by gitcode Fix instructions for validation script.
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Commit ecc1a933f5c0be3b2e4c2a6f902a58f8d123066d by gitcode Updated release notes with major features and bug listings.
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Commit 42584d576023ef8d31c6f2007b560118a2ff0b62 by gitcode Add shell script for getting the current list of GitHub issues for a milestone. Useful for building the release notes. Could be formatted in the GHM format we need for the release notes, but left as an exercise for the reader.
	bin/get-issues-list.sh
Commit 08a30979f3062ebe887c984312a71887c11dcc35 by gitcode Fix bullet list formatting in sem primer.
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	docs/eml-semantic-annotation-primer.md (diff)
Commit fe15e5d48f412f0e9c21439b45710dcf28f4083c by noreply fix glossary in primer
	docs/eml-semantic-annotation-primer.md (diff)
Commit 9d496fa137bd9d27a956515fb2ff0f3364db9b71 by margaret.obrien elevated the level glossary and list of vocabs. removed extra notes about subjects for later
	docs/eml-semantic-annotation-primer.md (diff)
Commit 288785bfa6e204170536e8290a3d5ae6978f2191 by margaret.obrien rm the toc since bookdown makes one. adapted paragrath on organization accordingly
	docs/eml-semantic-annotation-primer.md (diff)
Commit b96b934c442f22080cc6232fef19dc87ef47b2bb by margaret.obrien orphan text, extra linefeeds removed.
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Commit fbd6da79d69116e8b53bc0f0e86a389f88cba87a by margaret.obrien small changes to wording in appendix
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Commit f308f3660a7ed0e25c6685bf58d77fd6a1147def by margaret.obrien moved FAQs to above appendix
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Commit 1f5865a3a8b5244a225eb922045d5c4c3398a8da by margaret.obrien one more ISO example, per issue #311
	xsd/eml-attribute.xsd (diff)
Commit 913cbbb261ad30439b6e96031a68b1650e7d497c by margaret.obrien added methods appinfo, per issue #330
	xsd/eml-methods.xsd (diff)
Commit cfbb742ee7266f831a0f0330aadf2692dca02a81 by gitcode Add new images for each module.
	img/eml-project.png (diff)
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Commit 1b163e7a619000cb4002bf8c4f32350047f0634b by petridish Link to module images and diagrams in docs Addresses #316
	docs/eml-modules-discovery-interpret.md (diff)
	docs/build_book.R (diff)
	docs/eml-modules-resources.md (diff)
	docs/eml-modules-utility.md (diff)
	docs/eml-modules-data-structure.md (diff)
Commit 9a2a0e17f530e7dc1b5c772b5cdae696ef62f0db by petridish Link to interactive schema documentation in readme
	README.md (diff)
Commit 977144775c0c6b19923d27f765503c209157177a by gitcode Rearrange chapters to have all modules in one chapter. Also, fix the links to the overall schema interactive docs, and suppress warnings on the builds. Images and schemas are now fully complete.
	docs/eml-schema.md (diff)
	docs/eml-modules-utility.md (diff)
	docs/eml-modules-discovery-interpret.md (diff)
	docs/_bookdown.yml (diff)
	docs/eml-modules-data-structure.md (diff)
	docs/eml-modules-resources.md (diff)
	docs/build_book.R (diff)
Commit 088be76b638cb067c8589afccd031ea2230dc3aa by gitcode Move schema docs out of dist/schema and into docs/schema
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Commit 05e9f5ee4b4651fa0fd2d8345f1c0f190d190936 by gitcode Add newly generated schema images to built schema docs.
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Commit a8796065ec454581f669b4834c52f41f363309e3 by gitcode Copy source dirs into built book for proper linking.
	docs/build_book.R (diff)
Commit 0c99ccd5a04892accb9efca93c3288aba3cbba63 by gitcode Delete the contents of dist as this will now be a temporary staging area.
	dist/validation-and-content-references.html
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	dist/index.html
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Commit 2164796698deecc83939e41dbcceefc574a0a98c by gitcode Update site build description.
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Commit ee2567e31fc6a4ec6cb7552423df896a5146eff1 by gitcode Update the deploy script. THe script now builds the distribution site from scratch by running the build_book.R script, and then copies source files like images and schema docs and xsd files into the dist directory.  The dist directory is then added to a temporary branch, and pushed to gh_pages to be picked up by Netlify.  The temporary branch is then deleted, and we switch back to the branch from which the original docs were built.
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Commit a7b126b7db90fd7c072551dc5a2d78976131f969 by gitcode Remove unneeded status outputs from deploy script.
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Commit 243b0f1115b83a42d5e17e7947382841e30a41c0 by gitcode Add redirect config file for Netlify. This enables the bare EML namespace to redirect to the eml.xsd file.
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Commit 59e638a56baabe208b4543bf4cb22517813639e1 by gitcode Rewrite the URL rather than redirect.
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Commit 1694a4edb8072676dd05bc33bb4f75855e772a54 by gitcode Streamline git clone and build for EML parser.
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Commit a310e7fdda11667f977b5fa5ddd41b34bc8d3ae5 by gitcode Ignore the release dir in commits.
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Commit ffbeb1e6e71d13ebd7eb2a79204e152a4b924b0f by gitcode FUrther streamline git copy for EML schemas.
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Commit d5756571958010a1fa5aa16db71df5a088d343d2 by gitcode Fix emlparser servlet by adding utilities.jar. Now the servlet runs again and parses 2.2.0 and 2.1.1 docs properly.
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Commit 66a42fc5370c2af5f61697328d109251ab8f34d2 by gitcode Fix the `dist` target to create the release files for distribution.
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Commit ed2d5319e88ad813daa341cdea2ea6041fa1019f by gitcode Added paragraph descrining need for missing value codes and code definitions for enumerated domains.
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Commit 24301e3b94c29c2152d81553e5d6153d74629949 by gitcode Deprecated the eml-access module in the docs.
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Commit 15999974c18702dcdd2c64c60872702959539d80 by gitcode Updated language around contribution by maintainers. Removed language about the ecoinformatics charter.
	README.md (diff)
	docs/eml-contributors.md (diff)
Commit 5f3fccd9e09e96838f9fb3618aef3096b2c15ef2 by gitcode Add a codemeta.json file and a bibtext citation. The codemeta.json file is included in the HTML of the generated book, and the Bobtex entry is made available through a 'Copy Bibtex' button.
	docs/javascript.html
	docs/_output.yml (diff)
	README.md (diff)
	docs/codemeta.json
	docs/style.css
Commit b21f3f465d4bd6774eed8393c52ee09ab0ac364b by gitcode Update context file to use codemeta as default. Plus, define datacite vocabulary.
	docs/codemeta.json (diff)
Commit f1b54eadda9272be78a53cbdb2c01a273d82ec54 by noreply fixed minor typos
	docs/eml-semantic-annotation-primer.md (diff)
Commit 0d7b106c15ae74dc092780a7095b5a78cd82b936 by gitcode Fixed typos, added section on deprecating EML access.
	docs/eml-220info.md (diff)
Commit 3a9ae6d1de72d052169d2e75bff9587efe7eac11 by petridish Make some minor copy edits - Borderline overly-pedantic change from Bibtex to BibTeX - Change HTTP links to HTTPS where appropriate
	docs/eml-release-notes.md (diff)
	README.md (diff)
Commit 3840f49337b1c76c2701dd5fc7b2e3fc0f906a05 by tao Remove the ant target call "docs" since the build.xml doesn't have it any more.
	pom.xml (diff)
Commit 243ca3026cf05014661201f2fa72091596e0188e by tao Remove the duplicated methods set/getAbstract.
	src/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 58b4a091539b6f3aa56fce4dee9dd125a032f1ed by tao Bump the version of the datamanager jar file from 0.9.2 to 1.0.0.
	pom.xml (diff)
Commit b35ef1780e97c83dfdc288dbc77de9c7b6800afe by gitcode New language for deprecation of access element. Includes statement that access is considered advisory only.
	docs/eml-modules-utility.md (diff)
	docs/eml-220info.md (diff)
Commit eaf6a6e71b44b254e7e1cff561548d6a2695dc8a by gitcode Add more markdown documentation.
	docs/eml-modules-utility.md (diff)
Commit 233427f03610694d2a865e6748bcf8bfb51be900 by gitcode Update release target to include generated site.
	build.xml (diff)