Index (DataONE Java Client Library 2.4.0-SNAPSHOT API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y

A

abstracT - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
AccessPolicy - Class in org.dataone.service.types.v1: A set of rules that specifies as a whole the allowable permissions that a given user, group, or system has for accessing a resource, including data, metadata, resource map, and service resources.
AccessPolicy() - Constructor for class org.dataone.service.types.v1.AccessPolicy
accessPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
AccessPolicyEditor - Class in org.dataone.client.types
AccessPolicyEditor(AccessPolicy) - Constructor for class org.dataone.client.types.AccessPolicyEditor: Instantiates an AccessPolicyEditor that manipulates the given AccessPolicy.
AccessPolicyMarshallingAdapter - Class in org.dataone.service.util
AccessPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessPolicyMarshallingAdapter
accessRights - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
AccessRule - Class in org.dataone.service.types.v1: A rule that is used to allow a :term:`subject` to perform an action (such as read or write) on an object in DataONE.
AccessRule() - Constructor for class org.dataone.service.types.v1.AccessRule
AccessRuleMarshallingAdapter - Class in org.dataone.service.util
AccessRuleMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessRuleMarshallingAdapter
AccessUtil - Class in org.dataone.service.types.v1.util: A helper class to simplify the use of AccessRules and AccessPolicies consisting of static factory methods for creating these nested objects (accessPolicy has accessRules has Permissions and Subjects, each subject has a value)
AccessUtil() - Constructor for class org.dataone.service.types.v1.util.AccessUtil
accrualMethod - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
accrualPeriodicity - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
accrualPolicy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
addAccess(Subject[], Permission) - Method in class org.dataone.client.types.AccessPolicyEditor: For the given Subjects, adds the permission specified unless the matching or a 'greater' permission is already there.
addAdditionalInfo(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Add a 'additionalInfo' element item.
addAlgorithm(String) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Add a 'algorithm' element item.
addAllow(AccessRule) - Method in class org.dataone.service.types.v1.AccessPolicy: Add a 'allow' element item.
addAllowedNode(NodeReference) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Add a 'allowedNode' element item.
addAllowedObjectFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Add a 'allowedObjectFormat' element item.
addAndDownloadData(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Puts an object with the given Identifier to the package's local, temporary data store.
addAndDownloadData(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Puts an object with the given Identifier to the package's local, temporary data store.
addBlockedMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Add a 'blockedMemberNode' element item.
addContactSubject(Subject) - Method in class org.dataone.service.types.v1.Node: Add a 'contactSubject' element item.
addData(D1Object) - Method in class org.dataone.client.v1.itk.DataPackage: Puts a D1Object directly to the package's local, temporary data store without downloading it from a node.
addData(D1Object) - Method in class org.dataone.client.v2.itk.DataPackage: Puts a D1Object directly to the package's local, temporary data store without downloading it from a node.
addDateParamPair(String, Date) - Method in class org.dataone.service.util.D1Url: convenience method for adding date object to query parameters.
addDescription(String) - Method in class org.dataone.service.types.v1_1.QueryField: Add a 'description' element item.
addDistributionMetadata(String, String) - Method in class org.dataone.eml.EMLDocument: add a url and mime type to the document reference
addEmail(String) - Method in class org.dataone.service.types.v1.Person: Add a 'email' element item.
addEquivalentIdentity(Subject) - Method in class org.dataone.service.types.v1.Person: Add a 'equivalentIdentity' element item.
addFilePart(String, File) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a file part to the MMP
addFilePart(String, InputStream) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a file part to the MMP, using InputStream This method writes the contents of the stream to a temp file and sends it.
addFilePart(String, Object) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: The DataONE object (serializable datatype) passed in is serialized as the specified type to file.
addFilePart(String, Object, Class) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: Deprecated.
addFilePart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: This method generates a temp files for sending, containing the value parameter.
addFormat(Session, ObjectFormatIdentifier, ObjectFormat) - Method in class org.dataone.client.v2.impl.MultipartCNode
addFormat(Session, ObjectFormatIdentifier, ObjectFormat) - Method in interface org.dataone.service.cn.v2.CNCore
addGivenName(String) - Method in class org.dataone.service.types.v1.Person: Add a 'givenName' element item.
addGroup(Group) - Method in class org.dataone.service.types.v1.SubjectInfo: Add a 'group' element item.
addHasMember(Subject) - Method in class org.dataone.service.types.v1.Group: Add a 'hasMember' element item.
addHttpClientMonitor(HttpClient) - Method in class org.dataone.client.utils.HttpConnectionMonitorService: Add an HttpClient to close upon exit.
addIsMemberOf(Subject) - Method in class org.dataone.service.types.v1.Person: Add a 'isMemberOf' element item.
additionalInfo - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.Log: Add a 'logEntry' element item.
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.Log: Add a 'logEntry' element item.
addMonitor(HttpClientConnectionManager) - Method in class org.dataone.client.utils.HttpConnectionMonitorService: Add a connectionManager to monitor
addMonitorInfo(MonitorInfo) - Method in class org.dataone.service.types.v1.MonitorList: Add a 'monitorInfo' element item.
addNextPathElement(String) - Method in class org.dataone.service.util.D1Url: adds the next path element to the path portion of the URL, encoding unsafe characters.
addNode(Node) - Method in class org.dataone.service.types.v1.NodeList: Add a 'node' element item.
addNode(Node) - Method in class org.dataone.service.types.v2.NodeList: Add a 'node' element item.
addNonEmptyParam(String) - Method in class org.dataone.service.util.D1Url: adds a single parameter to the query portion of the URL (not a key-value pair) encoding unsafe characters.
addNonEmptyParamPair(String, String) - Method in class org.dataone.service.util.D1Url: adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addNonEmptyParamPair(String, Integer) - Method in class org.dataone.service.util.D1Url: adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addObject(Identifier, Date, Identifier, Identifier, Boolean) - Method in class org.dataone.client.types.ObsoletesChain
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFormatList: Add a 'objectFormat' element item.
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFormatList: Add a 'objectFormat' element item.
addObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectList: Add a 'objectInfo' element item.
addObjectLocation(ObjectLocation) - Method in class org.dataone.service.types.v1.ObjectLocationList: Add a 'objectLocation' element item.
addOption(String) - Method in class org.dataone.service.types.v2.OptionList: Add a 'option' element item.
addParamPart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a param part to the MMP
addPermission(Permission) - Method in class org.dataone.service.types.v1.AccessRule: Add a 'permission' element item.
addPerson(Person) - Method in class org.dataone.service.types.v1.SubjectInfo: Add a 'person' element item.
addPreEncodedNonEmptyQueryParams(String) - Method in class org.dataone.service.util.D1Url: Method for adding query params that bypasses encoding.
addPreferredMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Add a 'preferredMemberNode' element item.
addProperty(MediaTypeProperty) - Method in class org.dataone.service.types.v2.MediaType: Add a 'property' element item.
addProperty(Property) - Method in class org.dataone.service.types.v2.Node: Add a 'property' element item.
addPublicAccess(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil: Given the original policy, return an AccessPolicy containing all of the original rules, plus a new rule allowing public read permission, if not already in place (otherwise returns the original).
addQueryEngine(String) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Add a 'queryEngine' element item.
addQueryField(QueryField) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Add a 'queryField' element item.
addReplica(Replica) - Method in class org.dataone.service.types.v1.SystemMetadata: Add a 'replica' element item.
addRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.Service: Add a 'restriction' element item.
addRightsHolder(Subject) - Method in class org.dataone.service.types.v1.Group: Add a 'rightsHolder' element item.
addService(Service) - Method in class org.dataone.service.types.v1.Services: Add a 'service' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.AccessRule: Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.Node: Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.SubjectList: Add a 'subject' element item.
addTraceDetail(String, String) - Method in exception org.dataone.service.exceptions.BaseException: Add new detailed trace information, storing it the value under a known key.
addUsed(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder: Adds a addUsed triple to the specified Resource Map
addUsed(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Add multiple addUsed triples to the specified Resource Map
addVersion(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Add a 'version' element item.
addWasDerivedFrom(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder: Adds a wasDerivedFrom triple to the specified Resource Map
addWasDerivedFrom(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Add multiple wasDerivedFrom triples to the specified Resource Map
addWasGeneratedBy(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder: Adds a wasGeneratedBy triple to the specified Resource Map
addWasGeneratedBy(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Add multiple addWasGeneratedBy triples to the specified Resource Map
addWasInformedBy(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder: Adds a addWasInformedBy triple to the specified Resource Map
addWasInformedBy(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Add multiple addWasInformedBy triples to the specified Resource Map
afterRead(int) - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream
Agent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
agent - Static variable in class org.dataone.vocabulary.PROV
AgentClass - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
agreesWith - Static variable in class org.dataone.vocabulary.CITO_263
algorithm - Variable in class org.dataone.service.types.v1.Checksum
algorithm - Variable in class org.dataone.service.types.v1.ChecksumAlgorithmList
allow - Variable in class org.dataone.service.types.v1.AccessPolicy
allowedNode - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
allowedObjectFormat - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
alternative - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
archive(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
archive(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node: sets the archived flag to true on an MN or CN
archive(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
archive(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
archive(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client: Perform an archive on an object in DataONE with the given D1Object on the authoritativeMemberNode contained in its systemMetadata.
archive(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
archive(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
archive(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore: Deprecated.
the Authoritative Member Node is responsible for archiving content using SystemMetadata modifications
archive(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage: Deprecated.
use updateSystemMetadata() to mark content as archived
archived - Variable in class org.dataone.service.types.v1.SystemMetadata
areChecksumsEqual(Checksum, Checksum) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: Returns true if and only if checksum1 and checksum2 are equal: Values are equal, algorithms are equal.
assembleUrl() - Method in class org.dataone.service.util.D1Url
Association - Static variable in class org.dataone.vocabulary.PROV
audience - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
augmentConfiguration(String) - Static method in class org.dataone.configuration.Settings: Include additional properties in the global configuration.
authenticate(HttpServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
AuthenticationTimeout - Exception in org.dataone.service.exceptions: The DataONE AuthenticationTimeout exception, raised when authentication operations exceed pre-established limits.
AuthenticationTimeout(String, String) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
authoritativeMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata
authorizedClientSubjects(Session) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Derived from Metacat implementation Creates a set of subjects represented in the session object, parsing both the subject of the session and the subjectInfo.
AuthTokenSession - Class in org.dataone.client.auth: A subclass of Session to hide the complexities of AuthTokens and connection management from users.
AuthTokenSession(String) - Constructor for class org.dataone.client.auth.AuthTokenSession
AuthUtils - Class in org.dataone.service.types.v1.util
AuthUtils() - Constructor for class org.dataone.service.types.v1.util.AuthUtils
AuthUtils - Class in org.dataone.service.types.v2.util
AuthUtils() - Constructor for class org.dataone.service.types.v2.util.AuthUtils
AutoCloseHttpClientInputStream - Class in org.dataone.client.types: Use this class to wrap input streams that come from HttpClients IFF if you plan to never use the HttpClient again.
AutoCloseHttpClientInputStream(InputStream, HttpClient) - Constructor for class org.dataone.client.types.AutoCloseHttpClientInputStream
available - Variable in class org.dataone.service.types.v1.Service
available - Static variable in class org.dataone.vocabulary.DC_TERMS_080211

B

BaseException - Exception in org.dataone.service.exceptions: A BaseException is the root of all DataONE service class exception messages.
BaseException(int, String, String) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, and description.
BaseException(int, String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, pid, nodeId, description, and trace_information.
BaseException(int, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, description, and trace_information.
BaseException(int, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, description, and trace_information.
baseRequestConfig - Variable in class org.dataone.client.rest.HttpMultipartRestClient
baseURL - Variable in class org.dataone.service.types.v1.Node
baseURL - Variable in class org.dataone.service.types.v1.ObjectLocation
baseUrlMap - Variable in class org.dataone.client.v1.impl.SettingsContextNodeLocator
baseUrlMap - Variable in class org.dataone.client.v2.impl.SettingsContextNodeLocator
bibliographicCitation - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
BibliographicResource - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
BigIntegerMarshaller - Class in org.dataone.service.util
BigIntegerMarshaller() - Constructor for class org.dataone.service.util.BigIntegerMarshaller
blockedMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
buildAccessPolicy(HashMap<Subject, Set<Permission>>) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessPolicy instance where each contained AccessRule consists of one subject and that subject's permissions.
buildAccessRule(String, Permission) - Static method in class org.dataone.service.types.v1.TypeFactory
buildAccessRule(String, Permission[]) - Static method in class org.dataone.service.types.v1.TypeFactory
buildConnectionRegistry(X509Session) - Static method in class org.dataone.client.utils.HttpUtils
buildConnectionRegistry() - Static method in class org.dataone.client.utils.HttpUtils
buildD1KeepAliveStrategy(long) - Static method in class org.dataone.client.utils.HttpUtils: Builds a custom keep-alive strategy that uses the defaultKeepAliveTimeout value if one not returned in the response headers.
buildFormatIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating an ObjectFormatIdentifier.
buildIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating an Identifier.
buildMinimalSystemMetadata(Identifier, InputStream, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.client.v1.types.D1TypeBuilder: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.client.v2.types.D1TypeBuilder: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v1.TypeFactory: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v2.TypeFactory: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildNode(Class<N>, MultipartRestClient, URI) - Static method in class org.dataone.client.D1NodeFactory: Creates a D1Node implementation for the given serviceClass.
buildNodeReference(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating a NodeReference.
buildSubject(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating a Subject.

C

CACHE_MAX_ENTRIES - Static variable in class org.dataone.client.utils.HttpUtils
CACHE_MAX_OBJECT_SIZE - Static variable in class org.dataone.client.utils.HttpUtils
CertificateManager - Class in org.dataone.client.auth: Import and manage certificates to be used for authentication against DataONE service providers.
CertificateManager() - Constructor for class org.dataone.client.auth.CertificateManager: CertificateManager is normally a singleton, but custom instances can be created if needed.
Channel - Static variable in class org.dataone.vocabulary.ProvONE_V1
checkDataIntegrity() - Method in class org.dataone.client.v1.itk.D1Object: Compares the data to the values in the size and checksum SystemMetadata fields and returns true if they match.
checkDataIntegrity() - Method in class org.dataone.client.v2.itk.D1Object: Compares the data to the values in the size and checksum SystemMetadata fields and returns true if they match.
checkLength(List<String>) - Static method in class org.dataone.client.v1.itk.D1Object: Check that the all strings in the array have > 0 length.
checkLength(List<String>) - Static method in class org.dataone.client.v2.itk.D1Object: Check that the all strings in the array have > 0 length.
checkNotNull(List<Object>) - Static method in class org.dataone.client.v1.itk.D1Object: Check if any in a list of objects are null references.
checkNotNull(List<Object>) - Static method in class org.dataone.client.v2.itk.D1Object: Check if any in a list of objects are null references.
Checksum - Class in org.dataone.service.types.v1: Represents the value of a computed :term:`checksum` expressed as a hexadecimal formatted version of the message digest.
Checksum() - Constructor for class org.dataone.service.types.v1.Checksum
checksum - Variable in class org.dataone.service.types.v1.ObjectInfo
checksum - Variable in class org.dataone.service.types.v1.SystemMetadata
checksum(InputStream, String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: return a Checksum based on the input of the stream A useful technique when creating systemMetadata is to wrap the the inputStream in an org.apache.commons.io.input.CountingInputStream, to get the length of the content from the stream (after calling this method).
checksum(byte[], String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: produce a checksum for the given byte array
ChecksumAlgorithmList - Class in org.dataone.service.types.v1: Represents a list of :term:`checksum` algorithms.
ChecksumAlgorithmList() - Constructor for class org.dataone.service.types.v1.ChecksumAlgorithmList
ChecksumUtil - Class in org.dataone.service.types.v1.util
ChecksumUtil() - Constructor for class org.dataone.service.types.v1.util.ChecksumUtil
checkValidity() - Method in class org.dataone.client.auth.X509Session
checkValidity(Date) - Method in class org.dataone.client.auth.X509Session
CitationAct - Static variable in class org.dataone.vocabulary.CITO_263
cites - Static variable in class org.dataone.vocabulary.CITO_263
citesAsAuthority - Static variable in class org.dataone.vocabulary.CITO_263
citesAsDataSource - Static variable in class org.dataone.vocabulary.CITO_263
citesAsEvidence - Static variable in class org.dataone.vocabulary.CITO_263
citesAsMetadataDocument - Static variable in class org.dataone.vocabulary.CITO_263
citesAsPotentialSolution - Static variable in class org.dataone.vocabulary.CITO_263
citesAsRecommendedReading - Static variable in class org.dataone.vocabulary.CITO_263
citesAsRelated - Static variable in class org.dataone.vocabulary.CITO_263
citesAsSourceDocument - Static variable in class org.dataone.vocabulary.CITO_263
citesForInformation - Static variable in class org.dataone.vocabulary.CITO_263
CITO - Class in org.dataone.vocabulary: Provides select static terms for the current (v 2.6.3) CITO ontology used in DataONE constructs
CITO() - Constructor for class org.dataone.vocabulary.CITO
CITO_263 - Class in org.dataone.vocabulary: Provides select static terms for the CITO 2.6.3 ontology used in DataONE constructs
CITO_263() - Constructor for class org.dataone.vocabulary.CITO_263
classes - Static variable in class org.dataone.vocabulary.CITO_263: Classes defined in CITO
classes - Static variable in class org.dataone.vocabulary.DC_TERMS_080211: Classes defined in Dublin Core Metadata Terms
classes - Static variable in class org.dataone.vocabulary.PROV: Classes defined in PROV (ProvONE-relevant subset)
cleanupTempFiles() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: calling this method attempts to delete the client-side temp files from the system.
clearAccessPolicy() - Method in class org.dataone.client.types.AccessPolicyEditor
clearAddedHeaders() - Method in class org.dataone.client.rest.RestClient: Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
clearAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Remove all 'additionalInfo' element items.
clearAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Remove all 'algorithm' element items.
clearAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Remove all 'allowedNode' element items.
clearAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Remove all 'allowedObjectFormat' element items.
clearAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Remove all 'allow' element items.
clearBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Remove all 'blockedMemberNode' element items.
clearContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Remove all 'contactSubject' element items.
clearDefaultTimeout() - Method in class org.dataone.client.rest.HttpMultipartRestClient: Clears the default timeout parameter: "D1Client.http.default.timeouts.ms".
clearDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Remove all 'description' element items.
clearEmailList() - Method in class org.dataone.service.types.v1.Person: Remove all 'email' element items.
clearEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Remove all 'equivalentIdentity' element items.
clearGivenNameList() - Method in class org.dataone.service.types.v1.Person: Remove all 'givenName' element items.
clearGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Remove all 'group' element items.
clearHasMemberList() - Method in class org.dataone.service.types.v1.Group: Remove all 'hasMember' element items.
clearIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Remove all 'isMemberOf' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v1.Log: Remove all 'logEntry' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v2.Log: Remove all 'logEntry' element items.
clearMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Remove all 'monitorInfo' element items.
clearNodeList() - Method in class org.dataone.service.types.v1.NodeList: Remove all 'node' element items.
clearNodeList() - Method in class org.dataone.service.types.v2.NodeList: Remove all 'node' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Remove all 'objectFormat' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Remove all 'objectFormat' element items.
clearObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Remove all 'objectInfo' element items.
clearObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Remove all 'objectLocation' element items.
clearOptionList() - Method in class org.dataone.service.types.v2.OptionList: Remove all 'option' element items.
clearPermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Remove all 'permission' element items.
clearPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Remove all 'person' element items.
clearPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Remove all 'preferredMemberNode' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.MediaType: Remove all 'property' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.Node: Remove all 'property' element items.
clearQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Remove all 'queryEngine' element items.
clearQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Remove all 'queryField' element items.
clearReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Remove all 'replica' element items.
clearRestrictionList() - Method in class org.dataone.service.types.v1.Service: Remove all 'restriction' element items.
clearRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Remove all 'rightsHolder' element items.
clearServiceList() - Method in class org.dataone.service.types.v1.Services: Remove all 'service' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.Node: Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Remove all 'subject' element items.
clearVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Remove all 'version' element items.
client - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
client - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
ClientIdentityManager - Class in org.dataone.client.auth: A client specific class to wrap certain CertificateManager methods, provide some introspection on the current client identity, as well as methods to manipulate identities.
ClientIdentityManager() - Constructor for class org.dataone.client.auth.ClientIdentityManager
ClientSideException - Exception in org.dataone.client.exception: A Client-Side exception is a wrapper for any implementation-specific exception thrown by external packages.
ClientSideException(String) - Constructor for exception org.dataone.client.exception.ClientSideException
ClientSideException(String, Throwable) - Constructor for exception org.dataone.client.exception.ClientSideException: Construct a ClientSideException with the message.
clone() - Method in class org.dataone.client.types.AccessPolicyEditor
clone(Object) - Static method in class org.dataone.service.types.v1.TypeFactory: Clone via marshalling and unmarshalling using the TypeMarshaller to ensure a DEEP copy and no shared object references.
cloneAccessPolicy(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
cloneAccessRule(AccessRule) - Static method in class org.dataone.service.types.v1.util.AccessUtil
cloneFormatIdentifier(ObjectFormatIdentifier) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning an ObjectFormatIdentifier from another, such that they do not share any references for mutable properties.
cloneIdentifier(Identifier) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning an Identifier from another, such that they do not share any references for mutable properties.
cloneNodeReference(NodeReference) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning a NodeReference from another, such that they do not share any references for mutable properties.
cloneSubject(Subject) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning a Subject from another, such that they do not share any references for mutable properties.
close() - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream: Closes the proxied InputStream, and the HttpClient.
closeIdleConnections() - Method in class org.dataone.client.rest.HttpMultipartRestClient: Deprecated.
closeLoudly(InputStream) - Static method in class org.dataone.client.rest.MultipartD1Node: Utility method to be used in finally blocks for methods that have to close inputStreams.
CNAuthorization - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Authorization interface.
CNAuthorization - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Authorization interface.
CNCore - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier1 Core interface.
CNCore - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Core interface.
CNDiagnostic - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Diagnostic interface.
CNIdentity - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Identity interface.
CNIdentity - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Identity interface.
cnList - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
cnList - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
CNode - Interface in org.dataone.client.v1: An aggregated API that represents all of the possible services reachable at a Coordinating Node, defined in the org.dataone.service.cn package.
CNode - Interface in org.dataone.client.v2: An aggregated API that represents all of the possible services reachable at a Coordinating Node, defined in the org.dataone.service.cn package.
CNRead - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier1 Read interface.
CNRead - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Read interface.
CNRegister - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Registration interface.
CNRegister - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Registration interface.
CNReplication - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier4 Replication interface.
CNReplication - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier4 Replication interface.
CNView - Interface in org.dataone.service.cn.v2: The DataONE Coordinating Node View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
Collection - Static variable in class org.dataone.vocabulary.PROV
compare(Group, Group) - Method in class org.dataone.service.types.v1.comparators.GroupNameComparator: Compares order based on the String groupName of two Group objects.
compare(Person, Person) - Method in class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator: Compares order based on the String familyNames of two Person object.
compare(SystemMetadata, SystemMetadata) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator: Compares the order based on the modified date of the two SystemMetadata objects.
compare(SystemMetadata, SystemMetadata) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator: Compares the order based on the uploaded date of the two SystemMetadata objects.
compareD1ServiceType(Map<String, Object>, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: This method will compare any number of dataone service-type objects of the same type to each other and return a report of every field where there is a difference.
comparePermissions(Permission, Collection<Permission>) - Static method in class org.dataone.service.types.v1.util.AuthUtils: a comparison algorithm for hierarchical permissions (WRITE implies READ, and CHANGE implies WRITE and READ).
compareSystemMetadata(SystemMetadata, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: Reports the properties of a systemMetadata object, one per line in xpath fashion.
compareTo(Object) - Method in class org.dataone.service.types.v1.Identifier: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.NodeReference: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.Subject: Compares order based on the String value of two objects of the same type.
compiles - Static variable in class org.dataone.vocabulary.CITO_263
confirmMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
confirmMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
confirmMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
confirmMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
confirms - Static variable in class org.dataone.vocabulary.CITO_263
conformsTo - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
connectsTo - Static variable in class org.dataone.vocabulary.ProvONE_V1
Constants - Class in org.dataone.service.util
Constants() - Constructor for class org.dataone.service.util.Constants
contactSubject - Variable in class org.dataone.service.types.v1.Node
contains(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Determine if an object with the given Identifier is already present in the local data store.
contains(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Determine if an object with the given Identifier is already present in the local data store.
containsAssertionFrom - Static variable in class org.dataone.vocabulary.CITO_263
contributor - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
controlledBy - Static variable in class org.dataone.vocabulary.ProvONE_V1
Controller - Static variable in class org.dataone.vocabulary.ProvONE_V1
controls - Static variable in class org.dataone.vocabulary.ProvONE_V1
convert(String) - Static method in enum org.dataone.service.types.v1.Event
convert(String) - Static method in enum org.dataone.service.types.v1.NodeState
convert(String) - Static method in enum org.dataone.service.types.v1.NodeType
convert(String) - Static method in enum org.dataone.service.types.v1.Permission
convert(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus
convertTypeFromType(Object, Class<T>) - Static method in class org.dataone.service.types.v2.TypeFactory: Intended for converting DataONE objects to an instance of another version, this method copies and converts based on common properties.
copyDataPackages(CNode, MNode, List<Identifier>) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload: Copy oreIdentifers from sourceCn to targetMN.
corrects - Static variable in class org.dataone.vocabulary.CITO_263
count - Variable in class org.dataone.service.types.v1.Slice
coverage - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
create(String) - Static method in class org.dataone.client.auth.X509Session
create(X509Certificate, PrivateKey, Session) - Static method in class org.dataone.client.auth.X509Session
create(X509Certificate, PrivateKey) - Static method in class org.dataone.client.auth.X509Session
create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
create(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client: Attempts to create the given D1Object on the originMemberNode contained in its SystemMetadata.
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
createAccessPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of AccessPolicy
createAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<AccessPolicy>}
createAccessRule() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of AccessRule
createAccessRule(AccessRule) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<AccessRule>}
createAccessRule(Subject[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessRule containing the items specified in the parameters.
createAccessRule(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessRule containing the items specified in the parameters.
createChecksum() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Checksum
createChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Checksum>}
createChecksumAlgorithmList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ChecksumAlgorithmList
createChecksumAlgorithmList(ChecksumAlgorithmList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ChecksumAlgorithmList>}
created - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
createGroup(Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
createGroup(Session, Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
createGroup(Session, Group) - Method in class org.dataone.client.v2.impl.MultipartCNode
createGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
createGroup() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Group
createGroup(Group) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Group>}
createHttpClient(X509Session) - Static method in class org.dataone.client.utils.HttpUtils: Creates an HttpClient configured with the X509 credentials.
createHttpClient(String) - Static method in class org.dataone.client.utils.HttpUtils: Creates an HttpClient configured with the authorization token credentials.
createIdentifier() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Identifier
createIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Identifier>}
createLog() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Log>}
createLog() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Log>}
createLogEntry() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<LogEntry>}
createLogEntry() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<LogEntry>}
createMediaType() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of MediaType
createMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<MediaType>}
createMediaTypeProperty() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of MediaTypeProperty
createNode() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Node>}
createNode() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Node>}
createNodeList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeList>}
createNodeList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<NodeList>}
createNodeReference() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeReference
createNodeReference(NodeReference) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeReference>}
createNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeReplicationPolicy
createNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeReplicationPolicy>}
createObjectFormat() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectFormat>}
createObjectFormat() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<ObjectFormat>}
createObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectFormatList>}
createObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<ObjectFormatList>}
createObjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectInfo
createObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectInfo>}
createObjectList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectList
createObjectList(ObjectList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectList>}
createObjectLocation() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectLocation
createObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectLocationList
createObjectLocationList(ObjectLocationList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectLocationList>}
createOptionList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of OptionList
createOptionList(OptionList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<OptionList>}
createPerson() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Person
createPerson(Person) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Person>}
createPing() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Ping
createProperty() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Property
createProperty(Property) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Property>}
createQueryEngineDescription() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryEngineDescription
createQueryEngineDescription(QueryEngineDescription) - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of JAXBElement<QueryEngineDescription>}
createQueryEngineList() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryEngineList
createQueryEngineList(QueryEngineList) - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of JAXBElement<QueryEngineList>}
createQueryField() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryField
createReadWriteChangePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWriteChangePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWritePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write.
createReadWritePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write.
createReplica() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Replica
createReplica(Replica) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Replica>}
createReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ReplicationPolicy
createReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ReplicationPolicy>}
createResourceMap(Identifier, String) - Method in class org.dataone.ore.ResourceMapFactory: Create a resource map with the given identifier and aggregation title.
createResourceMap(Identifier, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ResourceMapFactory: creates a ResourceMap from the DataPackage representation.
createResourceMap(Identifier, Map<Identifier, List<Identifier>>, Map<Predicate, Map<Identifier, List<Identifier>>>) - Method in class org.dataone.ore.ResourceMapFactory: creates a ResourceMap from the DataPackage representation and a Map of other relationships.
createSchedule() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Schedule
createSchedule(Schedule) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Schedule>}
createService() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Service
createService(Service) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Service>}
createServiceMethodRestriction() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ServiceMethodRestriction
createServiceMethodRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ServiceMethodRestriction>}
createServices() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Services
createServices(Services) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Services>}
createSession() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Session
createSession(Session) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Session>}
createSingleRuleAccessPolicy(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessPolicy with a single AccessRule, and the AccessRule composed of Subjects and Permissions specified in the parameters.
createSlice() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Slice
createSubject() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Subject
createSubject(Subject) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Subject>}
createSubjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SubjectInfo
createSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SubjectInfo>}
createSubjectList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SubjectList
createSubjectList(SubjectList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SubjectList>}
createSubjectList(String[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates a java-List of Subject objects from the given String array.
createSynchronization() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Synchronization
createSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Synchronization>}
createSystemMetadata() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SystemMetadata>}
createSystemMetadata() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<SystemMetadata>}
creator - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
credits - Static variable in class org.dataone.vocabulary.CITO_263
critiques - Static variable in class org.dataone.vocabulary.CITO_263

D

D1_SCHEMAS - Static variable in class org.dataone.service.util.TypeMarshaller: The java representation of the DataONE schemas used to validate unmarshalling
D1Client - Class in org.dataone.client.v1.itk: The D1Client class represents a client-side implementation of the DataONE Service API.
D1Client() - Constructor for class org.dataone.client.v1.itk.D1Client
D1Client - Class in org.dataone.client.v2.itk: The D1Client class represents a client-side implementation of the DataONE Service API.
D1Client() - Constructor for class org.dataone.client.v2.itk.D1Client
D1Node - Interface in org.dataone.client: The common non-service-API interface all MNodes or CNodes must implement.
D1NodeFactory - Class in org.dataone.client: D1NodeFactory contains a method for building CNode and MNode instances from a URI.
D1NodeFactory() - Constructor for class org.dataone.client.D1NodeFactory
D1Object - Class in org.dataone.client.v1.itk: A representation of an object that can be stored in the DataONE system.
D1Object() - Constructor for class org.dataone.client.v1.itk.D1Object: Construct a new D1Object, which is then populated with data and system metadata during the download process.
D1Object(Identifier, byte[], String, String, String) - Constructor for class org.dataone.client.v1.itk.D1Object: Deprecated.
D1Object(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v1.itk.D1Object: Deprecated.
D1Object(Identifier, DataSource, ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v1.itk.D1Object: Create an object that contains the given data bytes and with the given system metadata values.
D1Object - Class in org.dataone.client.v2.itk: A representation of an object that can be stored in the DataONE system.
D1Object() - Constructor for class org.dataone.client.v2.itk.D1Object: Construct a new D1Object, which is then populated with data and system metadata during the download process.
D1Object(Identifier, byte[], String, String, String) - Constructor for class org.dataone.client.v2.itk.D1Object: Deprecated.
D1Object(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v2.itk.D1Object: Deprecated.
D1Object(Identifier, DataSource, ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v2.itk.D1Object: Create an object that contains the given data bytes and with the given system metadata values.
D1TypeBuilder - Class in org.dataone.client.v1.types
D1TypeBuilder() - Constructor for class org.dataone.client.v1.types.D1TypeBuilder
D1TypeBuilder - Class in org.dataone.client.v2.types
D1TypeBuilder() - Constructor for class org.dataone.client.v2.types.D1TypeBuilder
D1Url - Class in org.dataone.service.util
D1Url(String, String) - Constructor for class org.dataone.service.util.D1Url
D1Url(String) - Constructor for class org.dataone.service.util.D1Url
D1Url() - Constructor for class org.dataone.service.util.D1Url
Data - Static variable in class org.dataone.vocabulary.ProvONE_V1
DataoneEMLParser - Class in org.dataone.eml
DataPackage - Class in org.dataone.client.v1.itk: A DataPackage is a collection of interrelated data (science data, metadata) D1Objects plus their defined relationships (the ResourceMap object) DataPackage allows all of the science metadata, data objects, and system metadata associated with those objects to be accessed from a common place.
DataPackage() - Constructor for class org.dataone.client.v1.itk.DataPackage: Default constructor without identifier.
DataPackage(Identifier) - Constructor for class org.dataone.client.v1.itk.DataPackage: Construct a DataPackage using the given identifier to identify this package.
DataPackage - Class in org.dataone.client.v2.itk: A DataPackage is a collection of interrelated data (science data, metadata) D1Objects plus their defined relationships (the ResourceMap object) DataPackage allows all of the science metadata, data objects, and system metadata associated with those objects to be accessed from a common place.
DataPackage() - Constructor for class org.dataone.client.v2.itk.DataPackage: Default constructor without identifier.
DataPackage(Identifier) - Constructor for class org.dataone.client.v2.itk.DataPackage: Construct a DataPackage using the given identifier to identify this package.
date - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
dateAccepted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
dateCopyrighted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
dateLogged - Variable in class org.dataone.service.types.v1.LogEntry
dateLogged - Variable in class org.dataone.service.types.v2.LogEntry
DateMarshallingAdapter - Class in org.dataone.service.util
DateMarshallingAdapter() - Constructor for class org.dataone.service.util.DateMarshallingAdapter
dateSubmitted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.ObjectInfo
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.SystemMetadata
DateTimeMarshaller - Class in org.dataone.service.util
DateTimeMarshaller() - Constructor for class org.dataone.service.util.DateTimeMarshaller
dateUploaded - Variable in class org.dataone.service.types.v1.SystemMetadata
DC_TERMS - Class in org.dataone.vocabulary: Provides select static terms for the current Dublin Core Metadata Terms used in DataONE constructs
DC_TERMS() - Constructor for class org.dataone.vocabulary.DC_TERMS
DC_TERMS_080211 - Class in org.dataone.vocabulary: Provides select static terms for the 2008/02/11 Dublin Core Metadata Terms used in DataONE constructs
DC_TERMS_080211() - Constructor for class org.dataone.vocabulary.DC_TERMS_080211
decodeString(String) - Static method in class org.dataone.service.util.EncodingUtilities: Decode and return the specified pct-encoded String.
decodeXmlDataItems(String) - Static method in class org.dataone.service.util.EncodingUtilities
DEFAULT_KEEP_ALIVE_SECONDS - Static variable in class org.dataone.client.utils.HttpUtils
DEFAULT_TIMEOUT_PARAM - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
DEFAULT_TIMEOUT_VALUE - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
DefaultHttpMultipartRestClient - Class in org.dataone.client.rest: This subclass of HttpMultiparRestClient registers itself as an Observer of CertificateManager, and updates its Restclient's HttpClient with a new one using the CertificateManager's default certificate logic.
DefaultHttpMultipartRestClient() - Constructor for class org.dataone.client.rest.DefaultHttpMultipartRestClient: This MultipartRestClient implementation only uses the default or the set certificate location from CertificateManager to derive the Session.
defaultRestClient - Variable in class org.dataone.client.rest.MultipartD1Node: the D1Node instance adapter / connector to the RESTful service endpoints
defaultSession - Variable in class org.dataone.client.rest.MultipartD1Node: this represents the defaultSession to be used for establishing the SSL connection
defaultTlsPreferences - Static variable in class org.dataone.client.auth.CertificateManager
delete(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
delete(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
delete(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
delete(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
delete(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
delete(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
delete(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
delete(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
DELETE - Static variable in class org.dataone.service.util.Constants: HTTP Verb DELETE
deleteReplicationMetadata(Identifier, NodeReference, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
deleteReplicationMetadata(Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v2.CNReplication
denyMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
denyMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
denyMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
denyMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
derides - Static variable in class org.dataone.vocabulary.CITO_263
describe(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
describe(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
describe(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
describe(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
describe(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
describe(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
describe(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
describe(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
DescribeResponse - Class in org.dataone.service.types.v1: The DataONE Type to represent the metadata returned from a 'describe' request.
DescribeResponse(ObjectFormatIdentifier, BigInteger, Date, Checksum, BigInteger) - Constructor for class org.dataone.service.types.v1.DescribeResponse: instantiate a DescribeResponse object
describes - Static variable in class org.dataone.vocabulary.CITO_263
description - Variable in class org.dataone.service.types.v1.Node
description - Variable in class org.dataone.service.types.v1_1.QueryField
description - Variable in class org.dataone.service.types.v2.OptionList
description - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
deserializeAndThrowException(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
deserializeAndThrowException(InputStream, String, Integer, String) - Static method in class org.dataone.service.util.ExceptionHandler: Throw the exception that is contained in an HTTP response A response from an HTTP call may be determined to have an error.
deserializeBigInteger(String) - Static method in class org.dataone.service.util.BigIntegerMarshaller: convert a String to a BigInteger The String must be greater or equal to 0
deserializeDateToUTC(String) - Static method in class org.dataone.service.util.DateTimeMarshaller: convert a String to GMT date The STring must either be ISO 8601 compliant or http://www.w3.org/Protocols/rfc2616/rfc2616-sec3.html#sec3.3.1 compliant
deserializeHeadersAndThrowException(int, Header[]) - Static method in class org.dataone.service.util.ExceptionHandler
deserializePackage(String) - Static method in class org.dataone.client.v1.itk.DataPackage: Deserialize an ORE resourceMap by parsing it, extracting the associated package identifier, and the list of metadata and data objects aggregated in the ORE Map.
deserializePackage(String) - Static method in class org.dataone.client.v2.itk.DataPackage: Deserialize an ORE resourceMap by parsing it, extracting the associated package identifier, and the list of metadata and data objects aggregated in the ORE Map.
deserializeResourceMap(InputStream) - Method in class org.dataone.ore.ResourceMapFactory: Deserialize the inputStream into a ResourceMap using the standard OREParserFactory settings.
deserializeResourceMap(InputStream, boolean) - Method in class org.dataone.ore.ResourceMapFactory: Deserialize the inputStream into a ResourceMap either literally (only asserted statements present), or including inferred statements.
deserializeServiceType(Class<T>, InputStream) - Method in class org.dataone.client.rest.MultipartD1Node: deserialize an object of type from the inputstream This is a wrapper method of the standard common Unmarshalling method that recasts exceptions to ServiceFailure
deserializeServiceType(Class<T>, InputStream) - Static method in class org.dataone.service.util.ExceptionHandler: Wrapper for Marshalling method that recasts exceptions to ServiceFailure;
deserializeXml(InputStream, String) - Static method in class org.dataone.service.util.ExceptionHandler
designatedCN - Variable in class org.dataone.client.v1.impl.SettingsContextNodeLocator
designatedCN - Variable in class org.dataone.client.v2.impl.SettingsContextNodeLocator
disagreesWith - Static variable in class org.dataone.vocabulary.CITO_263
discusses - Static variable in class org.dataone.vocabulary.CITO_263
displayCertificate(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager: Show details of an X509 certificate, printing the information to STDOUT.
disputes - Static variable in class org.dataone.vocabulary.CITO_263
distributionMetadata - Variable in class org.dataone.eml.EMLDocument
DistributionMetadata(String, String) - Constructor for class org.dataone.eml.EMLDocument.DistributionMetadata
DistributionMetadata() - Constructor for class org.dataone.eml.EMLDocument.DistributionMetadata
Document - Static variable in class org.dataone.vocabulary.ProvONE_V1
documents - Static variable in class org.dataone.vocabulary.CITO_263
doDeleteRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doDeleteRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
doDeleteRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient: send a Delete request to the resource and get the response
doGetRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doGetRequest(String, Integer, boolean) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doGetRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient: Perform an HTTP GET request, setting the headers first and parsing /filtering exceptions to the exception stream on the response into their respective java instances.
doGetRequest(String, Integer, boolean) - Method in interface org.dataone.client.rest.MultipartRestClient
doGetRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient: send a GET request to the resource and get the response
doGetRequestForHeaders(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doGetRequestForHeaders(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
doHeadRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doHeadRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
doHeadRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient: send a Head request to the resource and get the response
doPostRequest(String, SimpleMultipartEntity, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doPostRequest(String, SimpleMultipartEntity, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
doPostRequest(String, SimpleMultipartEntity, RequestConfig) - Method in class org.dataone.client.rest.RestClient: send a POST request to the resource and get the response
doPutRequest(String, SimpleMultipartEntity, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
doPutRequest(String, SimpleMultipartEntity, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
doPutRequest(String, SimpleMultipartEntity, RequestConfig) - Method in class org.dataone.client.rest.RestClient: send a PUT request to the resource and get the response
download(Identifier) - Static method in class org.dataone.client.v1.itk.D1Object: Contact D1 services to download the systemMetadata and data.
download(Identifier) - Static method in class org.dataone.client.v1.itk.DataPackage: Download the resource map
download(Identifier) - Static method in class org.dataone.client.v2.itk.D1Object: Contact D1 services to download the systemMetadata and data.
download(Identifier) - Static method in class org.dataone.client.v2.itk.DataPackage: Download the resource map

E

echoCredentials(Session) - Method in class org.dataone.client.v2.impl.MultipartCNode
echoCredentials(Session) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
echoIndexedObject(Session, String, SystemMetadata, InputStream) - Method in class org.dataone.client.v2.impl.MultipartCNode
echoIndexedObject(Session, String, SystemMetadata, InputStream) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
echoSystemMetadata(Session, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
echoSystemMetadata(Session, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
educationLevel - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
email - Variable in class org.dataone.service.types.v1.Person
EMLDocument - Class in org.dataone.eml
EMLDocument() - Constructor for class org.dataone.eml.EMLDocument: constructor
EMLDocument.DistributionMetadata - Class in org.dataone.eml: sub class to contain the distribution metadata
encodeUrlFragment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode the URL fragment section following RFC 3986.
encodeUrlPathSegment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode a URL path segment as required by the URL specifications ( RFC 3986 and RFC 1738 section 3.3).
encodeUrlQuerySegment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode a URL query segment following the item-list / key-value convention: query = "?" q-item *( "&" q-item) q=item = q-segment [ "=" q-segment ]
EncodingUtilities - Class in org.dataone.service.util
EncodingUtilities() - Constructor for class org.dataone.service.util.EncodingUtilities
entryId - Variable in class org.dataone.service.types.v1.LogEntry
entryId - Variable in class org.dataone.service.types.v2.LogEntry
equals(Object) - Method in class org.dataone.service.types.v1.comparators.GroupNameComparator: Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator: Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator: Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator: Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.Identifier: 1 value 2 Value 3 String 4 (java.lang.String) 5 Identifier value is a string, override equals of Identifier.
equals(Object) - Method in class org.dataone.service.types.v1.NodeReference: 1 value 2 Value 3 String 4 (java.lang.String) 5 NodeReference value is a string, override equals of NodeReference.
equals(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: 1 value 2 Value 3 String 4 (java.lang.String) 5 ObjectFormatIdentifier value is a string, override equals of ObjectFormatIdentifier.
equals(Object) - Method in class org.dataone.service.types.v1.Subject: Value is a string, override equals of Subject.
equalsDN(String, String) - Method in class org.dataone.client.auth.CertificateManager: Compare Subject DNs for equality
equivalentIdentity - Variable in class org.dataone.service.types.v1.Person
Event - Enum in org.dataone.service.types.v1: The controlled list of events that are logged, which will include *create*, *update*, *delete*, *read*, *replicate*, synchronization_failed* and *replication_failed* events.
event - Variable in class org.dataone.service.types.v1.LogEntry
event - Variable in class org.dataone.service.types.v2.LogEntry
ExampleClient - Class in org.dataone.client.v1.examples: ExampleClient is a command-line class that can be run to illustrate usage patterns of the d1_libclient_java library methods and services.
ExampleClient() - Constructor for class org.dataone.client.v1.examples.ExampleClient
ExampleDataPackageUpload - Class in org.dataone.client.v1.examples: Utility for uploading data packages to a MN.
ExampleDataPackageUpload() - Constructor for class org.dataone.client.v1.examples.ExampleDataPackageUpload
ExampleObjectDownload - Class in org.dataone.client.v1.examples
ExampleObjectDownload() - Constructor for class org.dataone.client.v1.examples.ExampleObjectDownload
ExceptionalInputStream - Class in org.dataone.service.util: This is a special purpose subclass of PushbackInputStream useful for determining whether or not an input stream contains a Dataone type, a Dataone exception, or other.
ExceptionalInputStream(InputStream) - Constructor for class org.dataone.service.util.ExceptionalInputStream
ExceptionHandler - Class in org.dataone.service.util: uniform deserialization of DataONE Exceptions that may be rethrown
ExceptionHandler() - Constructor for class org.dataone.service.util.ExceptionHandler
ExceptionUtils - Class in org.dataone.client.utils
ExceptionUtils() - Constructor for class org.dataone.client.utils.ExceptionUtils
Execution - Static variable in class org.dataone.vocabulary.ProvONE_V1
extendS - Static variable in class org.dataone.vocabulary.CITO_263
extension - Variable in class org.dataone.service.types.v2.ObjectFormat
extent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211

F

familyName - Variable in class org.dataone.service.types.v1.Person
FileFormat - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
fileName - Variable in class org.dataone.service.types.v2.SystemMetadata
filterErrors(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
filterErrors(HttpResponse, boolean) - Static method in class org.dataone.service.util.ExceptionHandler: This method maps an HttpResponse onto an InputStream by consuming the response headers and throwing an exception when appropriate.
filterErrors(InputStream, boolean, String) - Static method in class org.dataone.service.util.ExceptionHandler
filterErrorsHeader(HttpResponse, String) - Static method in class org.dataone.service.util.ExceptionHandler: will filter serialized errors coming from the HEAD request by deserializing them and putting on the exception thread(?).
finalize() - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream
findEquivalentSubjects(SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Look for the equivalent authorization subjects for a given subject which can be either a person or a group.
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Returns the first node with identifier of the provided node reference
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Returns the first node with identifier of the provided node reference
findPersonsSubjects(Set<Subject>, SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils: A recursive method to traverse the equivalent-identity relationships and to handle the transitive nature of group membership and verified status.
FMT_HTML - Static variable in exception org.dataone.service.exceptions.BaseException
FMT_JSON - Static variable in exception org.dataone.service.exceptions.BaseException
FMT_XML - Static variable in exception org.dataone.service.exceptions.BaseException
format - Variable in class org.dataone.eml.EMLDocument
format - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
formatId - Variable in class org.dataone.service.types.v1.ObjectFormat
formatId - Variable in class org.dataone.service.types.v1.ObjectInfo
formatId - Variable in class org.dataone.service.types.v1.SystemMetadata
formatName - Variable in class org.dataone.service.types.v1.ObjectFormat
formatType - Variable in class org.dataone.service.types.v1.ObjectFormat
Frequency - Static variable in class org.dataone.vocabulary.DC_TERMS_080211

G

generateIdentifier(String, String) - Method in class org.dataone.client.rest.MultipartD1Node
generateIdentifier(Session, String, String) - Method in class org.dataone.client.rest.MultipartD1Node
generateIdentifier(String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
generateIdentifier(Session, String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
generateIdentifier(String, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
generateIdentifier(Session, String, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
generateIdentifier(String, String) - Method in interface org.dataone.service.cn.v1.CNCore
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNCore
generateIdentifier(String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
Generation - Static variable in class org.dataone.vocabulary.PROV
get(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node: Get the resource with the specified pid.
get(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node: Get the resource with the specified pid.
get(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
get(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
get(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
get(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
get(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Get the D1Object associated with a given Identifier from the local data store.
get(Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
get(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
get(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
get(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
get(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Get the D1Object associated with a given Identifier from the local data store.
get(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead: InputStream is the Java native version of D1's OctetStream
get(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead: InputStream is the Java native version of D1's OctetStream
GET - Static variable in class org.dataone.service.util.Constants: HTTP Verb GET
getAccessPolicy() - Method in class org.dataone.client.types.AccessPolicyEditor: gets the AccessPolicy being manipulated
getAccessPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'accessPolicy' element value.
getAccessPolicyEditor() - Method in class org.dataone.client.v1.itk.D1Object: Provides an object to manipulate this D1Object's accessPolicy
getAccessPolicyEditor() - Method in class org.dataone.client.v2.itk.D1Object: Provides an object to manipulate this D1Object's accessPolicy
getAddedHeaders() - Method in class org.dataone.client.rest.HttpMultipartRestClient: Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
getAddedHeaders() - Method in class org.dataone.client.rest.RestClient: Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
getAdditionalInfo(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get 'additionalInfo' element item by position.
getAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the list of 'additionalInfo' element items.
getAlgorithm() - Method in class org.dataone.service.types.v1.Checksum: Get the 'algorithm' attribute value.
getAlgorithm(int) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get 'algorithm' element item by position.
getAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get the list of 'algorithm' element items.
getAllow(int) - Method in class org.dataone.service.types.v1.AccessPolicy: Get 'allow' element item by position.
getAllowedNode(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get 'allowedNode' element item by position.
getAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the list of 'allowedNode' element items.
getAllowedObjectFormat(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get 'allowedObjectFormat' element item by position.
getAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the list of 'allowedObjectFormat' element items.
getAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Get the list of 'allow' element items.
getArchived() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'archived' element value.
getAssembledQueryString() - Method in class org.dataone.service.util.D1Url
getAsyncContext() - Method in class org.dataone.mimemultipart.MultipartRequest
getAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getAttributeNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getAuthoritativeMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'authoritativeMemberNode' element value.
getAuthToken() - Method in class org.dataone.client.auth.AuthTokenSession
getAuthType() - Method in class org.dataone.mimemultipart.MultipartRequest
getAvailable() - Method in class org.dataone.service.types.v1.Service: Get the 'available' attribute value.
getBaseURL() - Method in class org.dataone.service.types.v1.Node: Get the 'baseURL' element value.
getBaseURL() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'baseURL' element value.
getBaseUrl() - Method in class org.dataone.service.util.D1Url
getBlockedMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get 'blockedMemberNode' element item by position.
getBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the list of 'blockedMemberNode' element items.
getByPosition(int) - Method in class org.dataone.client.types.ObsoletesChain
getCACert(String) - Method in class org.dataone.client.auth.CertificateManager: Find the supplemental CA certificate to be used to validate user (peer) <
getCapabilities() - Method in class org.dataone.client.v1.impl.MultipartMNode
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartCNode
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartD1Node
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartMNode
getCapabilities() - Method in interface org.dataone.service.cn.v2.CNCore
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
getCertificate(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager: Get the client certificate from the request object
getCertificate() - Method in class org.dataone.client.auth.X509Session
getCertificateExpiration() - Static method in class org.dataone.client.auth.ClientIdentityManager
getCertificateLocation() - Method in class org.dataone.client.auth.CertificateManager
getCharacterEncoding() - Method in class org.dataone.mimemultipart.MultipartRequest
getChecksum(Identifier, String) - Method in class org.dataone.client.rest.MultipartD1Node
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.rest.MultipartD1Node: This method can handle both the MN and CN method, although the CN overriding method will need to recast the InvalidRequest exception and use 'null' for the checksumAlgorithm param
getChecksum(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
getChecksum(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
getChecksum(Identifier, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
getChecksum(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
getChecksum(Identifier, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
getChecksum(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
getChecksum(Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getChecksum() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'checksum' element value.
getChecksum() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'checksum' element value.
getCN() - Static method in class org.dataone.client.v1.itk.D1Client: Get the cached CNode object for calling Coordinating Node services.
getCN(Session) - Static method in class org.dataone.client.v1.itk.D1Client: Deprecated.
broken functionality, and unused. use getCN() or getCN(baseUrl) instead
getCN(String) - Static method in class org.dataone.client.v1.itk.D1Client: Returns a Coordinating Node using the base service URL to look up the node in the existing environment.
getCN() - Static method in class org.dataone.client.v2.itk.D1Client: Get the cached CNode object for calling Coordinating Node services.
getCN(Session) - Static method in class org.dataone.client.v2.itk.D1Client: Deprecated.
broken functionality, and unused. use getCN() or getCN(baseUrl) instead
getCN(String) - Static method in class org.dataone.client.v2.itk.D1Client: Returns a Coordinating Node using the base service URL to look up the node in the existing environment.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil: Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil: Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCNode() - Method in class org.dataone.client.NodeLocator: This method should return the favored CNode, so that a CN can be obtained without NodeReference or serviceBaseUrl.
getCNode() - Method in class org.dataone.client.v1.impl.NodeListNodeLocator
getCNode() - Method in class org.dataone.client.v1.impl.SettingsContextNodeLocator
getCNode() - Method in class org.dataone.client.v2.impl.NodeListNodeLocator
getCNode() - Method in class org.dataone.client.v2.impl.SettingsContextNodeLocator
getCode() - Method in exception org.dataone.service.exceptions.BaseException
getConfiguration() - Static method in class org.dataone.configuration.Settings: Get a Configuration interface that combines all resources found under all of the org.dataone.configuration/config.xml files from all application packages.
getContactSubject(int) - Method in class org.dataone.service.types.v1.Node: Get 'contactSubject' element item by position.
getContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the list of 'contactSubject' element items.
getContent_Length() - Method in class org.dataone.service.types.v1.DescribeResponse: get the Size of the object in bytes, the value of SystemMetadata.size from SystemMetadata.
getContentLength() - Method in class org.dataone.mimemultipart.MultipartRequest
getContentType() - Method in class org.dataone.client.types.InputStreamDataSource: get the content type of this stream
getContentType() - Method in class org.dataone.mimemultipart.MultipartRequest
getContextPath() - Method in class org.dataone.mimemultipart.MultipartRequest
getCookies() - Method in class org.dataone.mimemultipart.MultipartRequest
getCount() - Method in class org.dataone.service.types.v1.Log: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.MonitorInfo: Get the 'count' element value.
getCount() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.ObjectList: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.Slice: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.Log: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the 'count' attribute value.
getCurrentIdentity() - Static method in class org.dataone.client.auth.ClientIdentityManager: a simple encapsulation to return the client's (current) identity from the CertificateManager as a dataone Subject
getCurrentSession() - Static method in class org.dataone.client.auth.ClientIdentityManager: a simple encapsulation to return a session object built from the CertificateManager
getD1SubtypesListing(Object) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
getData() - Method in class org.dataone.client.v1.itk.D1Object: Deprecated.
getData() - Method in class org.dataone.client.v2.itk.D1Object: Deprecated.
getDataONE_Checksum() - Method in class org.dataone.service.types.v1.DescribeResponse: get The algorithm (SystemMetadata.algorithm) and Checksum (SystemMetadata.checksum) of the object being examined, drawn from the SystemMetadata.
getDataONE_ObjectFormatIdentifier() - Method in class org.dataone.service.types.v1.DescribeResponse: get The value of the SystemMetadata.objectFormatIdentifier entry available in the SystemMetadata.
getDataSource() - Method in class org.dataone.client.v1.itk.D1Object: get the DataSource representing the data
getDataSource() - Method in class org.dataone.client.v2.itk.D1Object: get the DataSource representing the data
getDate() - Method in class org.dataone.service.types.v1.MonitorInfo: Get the 'date' element value.
getDateHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getDateLogged() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'dateLogged' element value.
getDateLogged() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'dateLogged' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'dateSysMetadataModified' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'dateSysMetadataModified' element value.
getDateUploaded() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'dateUploaded' element value.
getDescription() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: Returns a concise description of the existing file parts, as comma-separated key-value pairs.
getDescription() - Method in exception org.dataone.service.exceptions.BaseException
getDescription() - Method in class org.dataone.service.types.v1.Node: Get the 'description' element value.
getDescription(int) - Method in class org.dataone.service.types.v1_1.QueryField: Get 'description' element item by position.
getDescription() - Method in class org.dataone.service.types.v2.OptionList: Get the 'description' attribute value.
getDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Get the list of 'description' element items.
getDetail_code() - Method in exception org.dataone.service.exceptions.BaseException
getDispatcherType() - Method in class org.dataone.mimemultipart.MultipartRequest
getDocumentedBy(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Convenience function for working with the metadata map.
getDocumentedBy(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Convenience function for working with the metadata map.
getEmail(int) - Method in class org.dataone.service.types.v1.Person: Get 'email' element item by position.
getEmailList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'email' element items.
getEntryId() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'entryId' element value.
getEntryId() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'entryId' element value.
getEquivalentIdentity(int) - Method in class org.dataone.service.types.v1.Person: Get 'equivalentIdentity' element item by position.
getEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'equivalentIdentity' element items.
getEvent() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'event' element value.
getEvent() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'event' element value.
getExtension(String) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo: Look up the extension for an ObjectFormat based on the format identifier for that ObjectFormat.
getExtension(ObjectFormat) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo: Look up the extension for an ObjectFormat.
getExtension() - Method in class org.dataone.service.types.v2.ObjectFormat: Get the 'extension' element value.
getExtensionValue(X509Certificate, String) - Method in class org.dataone.client.auth.CertificateManager: Retrieves the extension value given by the OID
getFamilyName() - Method in class org.dataone.service.types.v1.Person: Get the 'familyName' element value.
getFileName() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'fileName' element value.
getFmtId() - Method in class org.dataone.client.v1.itk.D1Object: Deprecated.
getFmtId() - Method in class org.dataone.client.v2.itk.D1Object: Deprecated.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v1.impl.MultipartCNode: Return the ObjectFormat for the given ObjectFormatIdentifier, obtained either from a client-cached ObjectFormatList from the ObjectFormatCache, or from a call to the CN.
getFormat(String) - Method in class org.dataone.client.v2.formats.ObjectFormatCache: Deprecated.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v2.formats.ObjectFormatCache: Lookup and return the format specified by the Identifier.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v2.impl.MultipartCNode: Return the ObjectFormat for the given ObjectFormatIdentifier, obtained either from a client-cached ObjectFormatList from the ObjectFormatCache, or from a call to the CN.
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v1.CNCore
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v2.CNCore
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Get the object format based on the given identifier.
getFormatId() - Method in class org.dataone.client.v1.itk.D1Object
getFormatId() - Method in class org.dataone.client.v2.itk.D1Object
getFormatId() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'formatId' element value.
getFormatName() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatName' element value.
getFormatType() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatType' element value.
getGivenName(int) - Method in class org.dataone.service.types.v1.Person: Get 'givenName' element item by position.
getGivenNameList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'givenName' element items.
getGroup(int) - Method in class org.dataone.service.types.v1.SubjectInfo: Get 'group' element item by position.
getGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the list of 'group' element items.
getGroupName() - Method in class org.dataone.service.types.v1.Group: Get the 'groupName' element value.
getHasMember(int) - Method in class org.dataone.service.types.v1.Group: Get 'hasMember' element item by position.
getHasMemberList() - Method in class org.dataone.service.types.v1.Group: Get the list of 'hasMember' element items.
getHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getHeaderNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getHeaders(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getHour() - Method in class org.dataone.service.types.v1.Schedule: Get the 'hour' attribute value.
getHttpClient() - Method in class org.dataone.client.auth.AuthTokenSession
getHttpClient() - Method in class org.dataone.client.auth.X509Session
getHttpClient() - Method in class org.dataone.client.rest.HttpMultipartRestClient: Gets the HttpClient instance used to make the connection
getHttpClient() - Method in class org.dataone.client.rest.RestClient: Gets the DefaultHttpClient instance used to make the connection
getHttpClientBuilder(X509Session) - Static method in class org.dataone.client.utils.HttpUtils: Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(X509Session, Boolean) - Static method in class org.dataone.client.utils.HttpUtils: Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(String) - Static method in class org.dataone.client.utils.HttpUtils: Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(String, Boolean) - Static method in class org.dataone.client.utils.HttpUtils: Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getIdentifier() - Method in class org.dataone.client.v1.itk.D1Object
getIdentifier() - Method in class org.dataone.client.v2.itk.D1Object
getIdentifier() - Method in exception org.dataone.service.exceptions.BaseException
getIdentifier() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.Node: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'identifier' element value.
getInputStream() - Method in class org.dataone.client.types.InputStreamDataSource: get the InputStream from this data source
getInputStream() - Method in class org.dataone.mimemultipart.MultipartRequest
getInstance() - Static method in class org.dataone.client.auth.CertificateManager: Return the singleton instance of this CertificateManager, creating it if needed.
getInstance() - Static method in class org.dataone.client.utils.HttpConnectionMonitorService
getInstance() - Static method in class org.dataone.client.v2.formats.ObjectFormatCache: Create the object format cache instance if it hasn't already been created.
getInstance() - Static method in class org.dataone.eml.DataoneEMLParser: singleton accessor
getInstance() - Static method in class org.dataone.ore.ResourceMapFactory: Returns the singleton instance for this class.
getInstance() - Static method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Get the instance of the ObjectFormatServiceImpl that has been instantiated, or instantiate one if it has not been already.
getIntHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getIpAddress() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'ipAddress' element value.
getIpAddress() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'ipAddress' element value.
getIsMemberOf(int) - Method in class org.dataone.service.types.v1.Person: Get 'isMemberOf' element item by position.
getIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'isMemberOf' element items.
getJAXBContext(Class) - Static method in class org.dataone.service.util.TypeMarshaller: A method to manage JAXB data type contexts, as they are expensive to build and destroy.
getKey() - Method in class org.dataone.service.types.v2.OptionList: Get the 'key' attribute value.
getKey() - Method in class org.dataone.service.types.v2.Property: Get the 'key' attribute value.
getLast_Modified() - Method in class org.dataone.service.types.v1.DescribeResponse: get DateTime value that indicates when the system metadata associated with the object was last modified, i.e.
getLastCompleteHarvest() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'lastCompleteHarvest' element value.
getLastHarvested() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'lastHarvested' element value.
getLastRefreshDate() - Method in class org.dataone.client.v2.formats.ObjectFormatCache: Returns the date of the last refresh from the CN.
getLastSuccess() - Method in class org.dataone.service.types.v1.Ping: Get the 'lastSuccess' attribute value.
getLastTempfile() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
getLatestRequestUrl() - Method in interface org.dataone.client.D1Node: A method to provide information about the latestRequest from the D1Node
getLatestRequestUrl() - Method in class org.dataone.client.rest.HttpMultipartRestClient: Gets the string representation of the current Thread's latest http request via this instance.
getLatestRequestUrl(Thread) - Method in class org.dataone.client.rest.HttpMultipartRestClient: Gets the string representation of the specified Thread's latest http request via this instance.
getLatestRequestUrl() - Method in class org.dataone.client.rest.MultipartD1Node: Useful for debugging to see what the last call was
getLatestRequestUrl() - Method in interface org.dataone.client.rest.MultipartRestClient
getLatestRequestUrl() - Method in class org.dataone.client.rest.RestClient: returns a description of the latest rest call made by this instance.
getLatestRequestUrl(Thread) - Method in class org.dataone.client.rest.RestClient: To support cross thread retrieval of request info, a parameterized form of this method.
getLatestVersion() - Method in class org.dataone.client.types.ObsoletesChain
getLocalAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocale() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocales() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocalName() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocalPort() - Method in class org.dataone.mimemultipart.MultipartRequest
getLogEntry(int) - Method in class org.dataone.service.types.v1.Log: Get 'logEntry' element item by position.
getLogEntry(int) - Method in class org.dataone.service.types.v2.Log: Get 'logEntry' element item by position.
getLogEntryList() - Method in class org.dataone.service.types.v1.Log: Get the list of 'logEntry' element items.
getLogEntryList() - Method in class org.dataone.service.types.v2.Log: Get the list of 'logEntry' element items.
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartMNode
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNCore
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore: Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNCore
getMaxObjectSize() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the 'maxObjectSize' element value.
getMday() - Method in class org.dataone.service.types.v1.Schedule: Get the 'mday' attribute value.
getMediaType() - Method in class org.dataone.service.types.v2.ObjectFormat: Get the 'mediaType' element value.
getMediaType() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'mediaType' element value.
getMetadataMap() - Method in class org.dataone.client.v1.itk.DataPackage: Get a map of the metadata members of the resource map and the associated data they document.
getMetadataMap() - Method in class org.dataone.client.v2.itk.DataPackage: Get a map of the metadata members of the resource map and the associated data they document.
getMethod() - Method in class org.dataone.mimemultipart.MultipartRequest
getMethodName() - Method in class org.dataone.service.types.v1.ServiceMethodRestriction: Get the 'methodName' attribute value.
getMimeType(String) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo: Look up the mime type for an ObjectFormat based on the format identifier for that ObjectFormat.
getMimeType(ObjectFormat) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo: Look up the mime type for an ObjectFormat.
getMin() - Method in class org.dataone.service.types.v1.Schedule: Get the 'min' attribute value.
getMinimalRefreshInterval() - Method in class org.dataone.client.v2.formats.ObjectFormatCache: Returns the minimal refresh interval (seconds)
getMN(String) - Static method in class org.dataone.client.v1.itk.D1Client: Returns a Member Node using the base service URL for the node.
getMN(NodeReference) - Static method in class org.dataone.client.v1.itk.D1Client: Return an MNode using the nodeReference for the member node.
getMN(String) - Static method in class org.dataone.client.v2.itk.D1Client: Returns a Member Node using the base service URL for the node.
getMN(NodeReference) - Static method in class org.dataone.client.v2.itk.D1Client: Return an MNode using the nodeReference for the member node.
getModel() - Method in class org.dataone.ore.ProvResourceMapBuilder: Return the RDF model as a ResourceMap.
getMon() - Method in class org.dataone.service.types.v1.Schedule: Get the 'mon' attribute value.
getMonitorInfo(int) - Method in class org.dataone.service.types.v1.MonitorList: Get 'monitorInfo' element item by position.
getMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Get the list of 'monitorInfo' element items.
getMultipartFiles() - Method in class org.dataone.mimemultipart.MultipartRequest: Return the multipart files as Map of field name to MultipartFile instance.
getMultipartParameters() - Method in class org.dataone.mimemultipart.MultipartRequest: Return the multipart parameters as Map of field name to form field String value.
getMultipartRestClient() - Method in class org.dataone.client.auth.AuthTokenSession
getMultipartRestClient() - Method in class org.dataone.client.auth.X509Session
getMultipartRestClient() - Static method in class org.dataone.client.v1.itk.D1Client
getMultipartRestClient() - Static method in class org.dataone.client.v2.itk.D1Client
getMultivalued() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'multivalued' element value.
getName() - Method in class org.dataone.client.types.InputStreamDataSource: get the name of the data source.
getName() - Method in class org.dataone.service.types.v1.Node: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1.Service: Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v2.MediaType: Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v2.MediaTypeProperty: Get the 'name' attribute value.
getNode(NodeReference) - Method in class org.dataone.client.NodeLocator: Return a Node associated with the nodeReference parameter, or throw a ClientSideException
getNode(String) - Method in class org.dataone.client.NodeLocator: Return a node associated with the baseUrl parameter, or throw a ClientSideException
getNode(int) - Method in class org.dataone.service.types.v1.NodeList: Get 'node' element item by position.
getNode(int) - Method in class org.dataone.service.types.v2.NodeList: Get 'node' element item by position.
getNodeBaseServiceUrl() - Method in interface org.dataone.client.D1Node: Get the base service URL for the associated Member or Coordinating Node.
getNodeBaseServiceUrl() - Method in class org.dataone.client.rest.MultipartD1Node: Retrieve the service URL for this node.
getNodeBaseServiceUrl() - Method in class org.dataone.client.v1.impl.MultipartCNode
getNodeBaseServiceUrl() - Method in class org.dataone.client.v1.impl.MultipartMNode
getNodeBaseServiceUrl() - Method in class org.dataone.client.v2.impl.MultipartCNode
getNodeBaseServiceUrl() - Method in class org.dataone.client.v2.impl.MultipartMNode
getNodeCapabilities(NodeReference) - Method in class org.dataone.client.v2.impl.MultipartCNode
getNodeCapabilities(NodeReference) - Method in interface org.dataone.service.cn.v2.CNRegister
getNodeId() - Method in interface org.dataone.client.D1Node: Get the NodeId associated with the D1Node
getNodeId() - Method in class org.dataone.client.rest.MultipartD1Node
getNodeId() - Method in exception org.dataone.service.exceptions.BaseException: Get the node Id string
getNodeIdentifier() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'nodeIdentifier' element value.
getNodeList() - Method in class org.dataone.service.types.v1.NodeList: Get the list of 'node' element items.
getNodeList() - Method in class org.dataone.service.types.v2.NodeList: Get the list of 'node' element items.
getNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.Node: Get the 'nodeReplicationPolicy' element value.
getNodeType() - Method in interface org.dataone.client.D1Node: Get the NodeType associated with the D1Node
getNodeType() - Method in class org.dataone.client.rest.MultipartD1Node
getNumberReplicas() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the 'numberReplicas' attribute value.
getObjectFormat(int) - Method in class org.dataone.service.types.v1.ObjectFormatList: Get 'objectFormat' element item by position.
getObjectFormat(int) - Method in class org.dataone.service.types.v2.ObjectFormatList: Get 'objectFormat' element item by position.
getObjectFormatFile() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Convenience method to retrieve the default format list as a stream
getObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the list of 'objectFormat' element items.
getObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the list of 'objectFormat' element items.
getObjectFormatMap() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
getObjectFormatMap() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Return the hash containing the formatId and format mapping
getObjectInfo(int) - Method in class org.dataone.service.types.v1.ObjectList: Get 'objectInfo' element item by position.
getObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Get the list of 'objectInfo' element items.
getObjectLocation(int) - Method in class org.dataone.service.types.v1.ObjectLocationList: Get 'objectLocation' element item by position.
getObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the list of 'objectLocation' element items.
getObsoletedBy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'obsoletedBy' element value.
getObsoletes() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'obsoletes' element value.
getOption(int) - Method in class org.dataone.service.types.v2.OptionList: Get 'option' element item by position.
getOptionList() - Method in class org.dataone.service.types.v2.OptionList: Get the list of 'option' element items.
getOREModel() - Method in class org.dataone.ore.ResourceMapFactory: this method optimizes retrieving and caching the ORE model, used for reasoning model
getOriginalVersion() - Method in class org.dataone.client.types.ObsoletesChain
getOriginMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'originMemberNode' element value.
getOutputStream() - Method in class org.dataone.client.types.InputStreamDataSource: get an output stream for this data source.
getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in interface org.dataone.service.mn.v2.MNPackage
getPackageId() - Method in class org.dataone.client.v1.itk.DataPackage
getPackageId() - Method in class org.dataone.client.v2.itk.DataPackage
getParameter(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterMap() - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterValues(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getPart(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getParts() - Method in class org.dataone.mimemultipart.MultipartRequest
getPathInfo() - Method in class org.dataone.mimemultipart.MultipartRequest
getPathTranslated() - Method in class org.dataone.mimemultipart.MultipartRequest
getPendingMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
getPendingMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
getPendingMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
getPendingMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
getPermission(int) - Method in class org.dataone.service.types.v1.AccessRule: Get 'permission' element item by position.
getPermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Get the list of 'permission' element items.
getPermissionMap(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
getPerson(int) - Method in class org.dataone.service.types.v1.SubjectInfo: Get 'person' element item by position.
getPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the list of 'person' element items.
getPid() - Method in exception org.dataone.service.exceptions.BaseException: Deprecated.
As of release 2.4, replaced by BaseException.getIdentifier()
getPing() - Method in class org.dataone.service.types.v1.Node: Get the 'ping' element value.
getPreference() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'preference' element value.
getPreferredMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get 'preferredMemberNode' element item by position.
getPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the list of 'preferredMemberNode' element items.
getPrivateKey() - Method in class org.dataone.client.auth.X509Session
getProperty(int) - Method in class org.dataone.service.types.v2.MediaType: Get 'property' element item by position.
getProperty(int) - Method in class org.dataone.service.types.v2.Node: Get 'property' element item by position.
getPropertyList() - Method in class org.dataone.service.types.v2.MediaType: Get the list of 'property' element items.
getPropertyList() - Method in class org.dataone.service.types.v2.Node: Get the list of 'property' element items.
getProtocol() - Method in class org.dataone.mimemultipart.MultipartRequest
getPublishDate(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
getQueryEngine(int) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get 'queryEngine' element item by position.
getQueryEngineDescription(Session, String) - Method in class org.dataone.client.rest.MultipartD1Node
getQueryEngineDescription(String) - Method in class org.dataone.client.v1.impl.MultipartCNode
getQueryEngineDescription(String) - Method in class org.dataone.client.v1.impl.MultipartMNode
getQueryEngineDescription(String) - Method in interface org.dataone.service.cn.v1.CNRead
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.cn.v2.CNRead
getQueryEngineDescription(String) - Method in interface org.dataone.service.mn.v1.MNQuery
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.mn.v2.MNQuery
getQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get the list of 'queryEngine' element items.
getQueryEngineVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'queryEngineVersion' element value.
getQueryField(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get 'queryField' element item by position.
getQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the list of 'queryField' element items.
getQuerySchemaVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'querySchemaVersion' element value.
getQueryString() - Method in class org.dataone.mimemultipart.MultipartRequest
getReader() - Method in class org.dataone.mimemultipart.MultipartRequest
getRealPath(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteHost() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemotePort() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteUser() - Method in class org.dataone.mimemultipart.MultipartRequest
getReplica(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
getReplica(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
getReplica(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
getReplica(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getReplica(int) - Method in class org.dataone.service.types.v1.SystemMetadata: Get 'replica' element item by position.
getReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the list of 'replica' element items.
getReplicaMemberNode() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicaMemberNode' element value.
getReplicationAllowed() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the 'replicationAllowed' attribute value.
getReplicationPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'replicationPolicy' element value.
getReplicationStatus() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicationStatus' element value.
getReplicaVerified() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicaVerified' element value.
getRequestDispatcher(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestedSessionId() - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestURI() - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestURL() - Method in class org.dataone.mimemultipart.MultipartRequest
getResetConfiguration() - Static method in class org.dataone.configuration.Settings
getResource() - Method in class org.dataone.service.util.D1Url
getResourceMap() - Method in class org.dataone.client.v1.itk.DataPackage: Return the internally stored resource map
getResourceMap() - Method in class org.dataone.client.v2.itk.DataPackage: Return the internally stored resource map
getRestClient(Session) - Method in class org.dataone.client.rest.MultipartD1Node: API methods should use this method to get the MultipartRestClient to be used for the call.
getRestriction(int) - Method in class org.dataone.service.types.v1.Service: Get 'restriction' element item by position.
getRestrictionList() - Method in class org.dataone.service.types.v1.Service: Get the list of 'restriction' element items.
getRightsHolder(int) - Method in class org.dataone.service.types.v1.Group: Get 'rightsHolder' element item by position.
getRightsHolder() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'rightsHolder' element value.
getRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Get the list of 'rightsHolder' element items.
getSchedule() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'schedule' element value.
getScheme() - Method in class org.dataone.mimemultipart.MultipartRequest
getSec() - Method in class org.dataone.service.types.v1.Schedule: Get the 'sec' attribute value.
getSerialVersion() - Method in class org.dataone.service.types.v1.DescribeResponse: get the SerialVersion of the object SystemMetadata
getSerialVersion() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'serialVersion' element value.
getSeriesId() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'seriesId' element value.
getServerName() - Method in class org.dataone.mimemultipart.MultipartRequest
getServerPort() - Method in class org.dataone.mimemultipart.MultipartRequest
getService(int) - Method in class org.dataone.service.types.v1.Services: Get 'service' element item by position.
getServiceList() - Method in class org.dataone.service.types.v1.Services: Get the list of 'service' element items.
getServices() - Method in class org.dataone.service.types.v1.Node: Get the 'services' element value.
getServletContext() - Method in class org.dataone.mimemultipart.MultipartRequest
getServletPath() - Method in class org.dataone.mimemultipart.MultipartRequest
getSession(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager: extracts the principal from the certificate passed in with the request and creates the dataone Session object.
getSession() - Method in class org.dataone.client.rest.HttpMultipartRestClient
getSession() - Method in interface org.dataone.client.rest.MultipartRestClient
getSession(boolean) - Method in class org.dataone.mimemultipart.MultipartRequest
getSession() - Method in class org.dataone.mimemultipart.MultipartRequest
getSize() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'size' element value.
getSize() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'size' element value.
getSpaceAllocated() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the 'spaceAllocated' element value.
getSSLConnectionSocketFactory(String) - Method in class org.dataone.client.auth.CertificateManager: For use by clients making requests via SSL connection.
getSSLConnectionSocketFactory(X509Session) - Method in class org.dataone.client.auth.CertificateManager
getSSLSocketFactory(String) - Method in class org.dataone.client.auth.CertificateManager: For use by clients making requests via SSL connection.
getSSLSocketFactory(X509Session) - Method in class org.dataone.client.auth.CertificateManager
getStart() - Method in class org.dataone.service.types.v1.Slice: Get the 'start' attribute value.
getStartingPoint() - Method in class org.dataone.client.types.ObsoletesChain
getState() - Method in class org.dataone.service.types.v1.Node: Get the 'state' attribute value.
getSubject(int) - Method in class org.dataone.service.types.v1.AccessRule: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Group: Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.Node: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Person: Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.Session: Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.SubjectList: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'subject' element value.
getSubjectDN(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager: Returns the RFC2253 string representation for the certificate's subject This is the standard format used in DataONE.
getSubjectInfo(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager: Retrieve the SubjectInfo contained in the given certificate
getSubjectInfo(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
getSubjectInfo(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
getSubjectInfo(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
getSubjectInfo(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
getSubjectInfo() - Method in class org.dataone.service.types.v1.Session: Get the 'subjectInfo' element value.
getSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Get the list of 'subject' element items.
getSubmitter() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'submitter' element value.
getSuccess() - Method in class org.dataone.service.types.v1.Ping: Get the 'success' attribute value.
getSynchronization() - Method in class org.dataone.service.types.v1.Node: Get the 'synchronization' element value.
getSystemMetadata(Session, Identifier, boolean) - Method in class org.dataone.client.v1.impl.MultipartCNode: Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
getSystemMetadata(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
getSystemMetadata(Session, Identifier, boolean) - Method in class org.dataone.client.v1.impl.MultipartMNode: Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
getSystemMetadata(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
getSystemMetadata() - Method in class org.dataone.client.v1.itk.D1Object
getSystemMetadata() - Method in class org.dataone.client.v1.itk.DataPackage: Get the SystemMetadata object associated with the data package.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode: Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartD1Node: Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode: Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata() - Method in class org.dataone.client.v2.itk.D1Object
getSystemMetadata() - Method in class org.dataone.client.v2.itk.DataPackage: Get the SystemMetadata object associated with the data package.
getSystemMetadata(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
getSystemMetadata(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getTotal() - Method in class org.dataone.service.types.v1.Slice: Get the 'total' attribute value.
getTraceDetail(String) - Method in exception org.dataone.service.exceptions.BaseException: Get the value of one of the trace detail parametersm retrieved by its key value.
getTraceKeySet() - Method in exception org.dataone.service.exceptions.BaseException: Return a Set representation of all of the keys for the trace values in this exception.
getType() - Method in class org.dataone.service.types.v1.Node: Get the 'type' attribute value.
getType() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'type' element value.
getType() - Method in class org.dataone.service.types.v2.Property: Get the 'type' attribute value.
getUncharacterizedMembers() - Method in class org.dataone.client.v1.itk.DataPackage: Returns a list of package members that are not in the relationship map (implying that these are not true members, as they will not be included in the serialized ResourceMap).
getUncharacterizedMembers() - Method in class org.dataone.client.v2.itk.DataPackage: Returns a list of package members that are not in the relationship map (implying that these are not true members, as they will not be included in the serialized ResourceMap).
getUnresolvableMembers() - Method in class org.dataone.client.v1.itk.DataPackage: Returns the Identifiers in the relationship map that cannot be found in the object map or resolved by the CN.
getUnresolvableMembers() - Method in class org.dataone.client.v2.itk.DataPackage: Returns the Identifiers in the relationship map that cannot be found in the object map or resolved by the CN.
getUrl() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'url' element value.
getUrl() - Method in class org.dataone.service.util.D1Url
getUserAgent() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'userAgent' element value.
getUserAgent() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'userAgent' element value.
getUserPrincipal() - Method in class org.dataone.mimemultipart.MultipartRequest
getValue() - Method in class org.dataone.service.types.v1.Checksum: Get the extension value.
getValue() - Method in class org.dataone.service.types.v1.Identifier: Get the 'Identifier' complexType value.
getValue() - Method in class org.dataone.service.types.v1.NodeReference: Get the 'NodeReference' complexType value.
getValue() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Get the 'ObjectFormatIdentifier' simpleType value.
getValue() - Method in class org.dataone.service.types.v1.Subject: Get the 'Subject' complexType value.
getValue() - Method in class org.dataone.service.types.v2.MediaTypeProperty: Get the extension value.
getValue() - Method in class org.dataone.service.types.v2.Property: Get the extension value.
getVerified() - Method in class org.dataone.service.types.v1.Person: Get the 'verified' element value.
getVersion(int) - Method in class org.dataone.service.types.v1.ObjectLocation: Get 'version' element item by position.
getVersion() - Method in class org.dataone.service.types.v1.Service: Get the 'version' attribute value.
getVersionAsOf(Date) - Method in class org.dataone.client.types.ObsoletesChain
getVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the list of 'version' element items.
getWday() - Method in class org.dataone.service.types.v1.Schedule: Get the 'wday' attribute value.
getYear() - Method in class org.dataone.service.types.v1.Schedule: Get the 'year' attribute value.
givenName - Variable in class org.dataone.service.types.v1.Person
givesBackgroundTo - Static variable in class org.dataone.vocabulary.CITO_263
givesSupportTo - Static variable in class org.dataone.vocabulary.CITO_263
grabAccessPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabAllowListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessPolicy
grabPermissionListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
grabReplicaListNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabReplicationPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.Node
Group - Class in org.dataone.service.types.v1: Group represents metadata about a :term:`Subject` that represents a collection of other Subjects.
Group() - Constructor for class org.dataone.service.types.v1.Group
group - Variable in class org.dataone.service.types.v1.SubjectInfo
groupName - Variable in class org.dataone.service.types.v1.Group
GroupNameComparator - Class in org.dataone.service.types.v1.comparators: A comparator for comparing the Group objects base on the GroupName property (String) Note: this comparator imposes orderings that are inconsistent with equals.
GroupNameComparator() - Constructor for class org.dataone.service.types.v1.comparators.GroupNameComparator

H

hadEntity - Static variable in class org.dataone.vocabulary.ProvONE_V1
hadInPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
hadMember - Static variable in class org.dataone.vocabulary.PROV
hadOutPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
hadPlan - Static variable in class org.dataone.vocabulary.PROV
hasAccess(Subject, Permission) - Method in class org.dataone.client.types.AccessPolicyEditor
hasCitationCharacterization - Static variable in class org.dataone.vocabulary.CITO_263
hasCitedEntity - Static variable in class org.dataone.vocabulary.CITO_263
hasCitingEntity - Static variable in class org.dataone.vocabulary.CITO_263
hasDefaultParam - Static variable in class org.dataone.vocabulary.ProvONE_V1
hasFormat - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
hashCode() - Method in class org.dataone.service.types.v1.Identifier: return the hashcode of Identifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.NodeReference: return the hashcode of NodeReference's string value.
hashCode() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: return the hashcode of ObjectFormatIdentifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.Subject: return the hashcode of Subject's string value.
hasInPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
hasMember - Variable in class org.dataone.service.types.v1.Group
hasOutPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
hasPart - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
hasReplyFrom - Static variable in class org.dataone.vocabulary.CITO_263
hasReservation(Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
hasReservation(Session, Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
hasReservation(Session, Subject, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
hasReservation(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
hasSubProgram - Static variable in class org.dataone.vocabulary.ProvONE_V1: Object properties defined in the ProvONE model
hasVersion - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
HEAD - Static variable in class org.dataone.service.util.Constants: HTTP Verb HEAD
headers - Variable in class org.dataone.client.rest.RestClient
hour - Variable in class org.dataone.service.types.v1.Schedule
httpClient - Variable in class org.dataone.client.rest.RestClient
HttpConnectionMonitorService - Class in org.dataone.client.utils: A Service class that monitors HttpClient ConnectionManagers for stale (idle and expired) connections and removes them to free up system resources (sockets).
HttpMultipartRestClient - Class in org.dataone.client.rest: This class wraps the RestClient, adding uniform exception deserialization and the setup of SSL for standard DataONE communications.
HttpMultipartRestClient(HttpClient, X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient: The basic constructor to implement the MultipartRestClient interface using apache HttpClient and X509Certificate.
HttpMultipartRestClient(HttpClientBuilder, X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient: This constructor is used to give users flexibility in creating the HttpClient, but takes care of configuring the ConnectionManager with the X509Session parameter.
HttpMultipartRestClient() - Constructor for class org.dataone.client.rest.HttpMultipartRestClient: creates an HttpMultipartRestClient configured with the certificate in the default or set location in the CertificateManager.
HttpMultipartRestClient(String) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient: creates an HttpMultipartRestClient configured with the certificate registered to the CertificateManager.
HttpMultipartRestClient(X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient: creates an HttpMultipartRestClient configured with the certificate contained in the X509Session.
HttpMultipartRestClient(AuthTokenSession) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
HttpUtils - Class in org.dataone.client.utils: A utility class to simplify creation and configuration of HttpClients.
HttpUtils() - Constructor for class org.dataone.client.utils.HttpUtils

I

Identifier - Class in org.dataone.service.types.v1: An :term:`identifier` (:term:`PID`) in the DataONE system that is used to uniquely and globally identify an object.
Identifier() - Constructor for class org.dataone.service.types.v1.Identifier
identifier - Variable in class org.dataone.service.types.v1.LogEntry
identifier - Variable in class org.dataone.service.types.v1.Node
identifier - Variable in class org.dataone.service.types.v1.ObjectInfo
identifier - Variable in class org.dataone.service.types.v1.ObjectLocationList
identifier - Variable in class org.dataone.service.types.v1.SystemMetadata
identifier - Variable in class org.dataone.service.types.v2.LogEntry
identifier - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
IdentifierNotUnique - Exception in org.dataone.service.exceptions: The DataONE IdentifierNotUnique exception, raised when a requested identifier has already been used or reserved.
IdentifierNotUnique(String, String) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
identifiers() - Method in class org.dataone.client.v1.itk.DataPackage: Return the set of Identifiers that are part of this package.
identifiers() - Method in class org.dataone.client.v2.itk.DataPackage: Return the set of Identifiers that are part of this package.
includesExcerptFrom - Static variable in class org.dataone.vocabulary.CITO_263
includesQuotationFrom - Static variable in class org.dataone.vocabulary.CITO_263
initCnList() - Method in class org.dataone.client.v1.impl.NodeListNodeLocator: Determines which CNodes will be part of the cnList.
initCnList() - Method in class org.dataone.client.v2.impl.NodeListNodeLocator: Determines which CNodes will be part of the cnList.
InputStreamDataSource - Class in org.dataone.client.types: Encapsulate an InputStream within a DataSource interface so that it is accessible to MIME processors.
InputStreamDataSource(String, InputStream) - Constructor for class org.dataone.client.types.InputStreamDataSource: construct an InputStreamDataSource object
insertRelationship(Identifier, List<Identifier>) - Method in class org.dataone.client.v1.itk.DataPackage: Declare which data objects are documented by a metadata object, using their identifiers.
insertRelationship(URI, Predicate, URI) - Method in class org.dataone.client.v1.itk.DataPackage: Relate a given subject URI to an object URI using the given predicate.
insertRelationship(String, Predicate, URI) - Method in class org.dataone.client.v1.itk.DataPackage: Relate a given subject blank node to an object URI using the given predicate.
insertRelationship(URI, Predicate, List<URI>) - Method in class org.dataone.client.v1.itk.DataPackage: Relate a given subject URI to a list of object URIs using the given predicate.
insertRelationship(URI, Predicate, Object) - Method in class org.dataone.client.v1.itk.DataPackage: Relate a given subject URI to a literal using the given predicate.
insertRelationship(Identifier, List<Identifier>) - Method in class org.dataone.client.v2.itk.DataPackage: Declare which data objects are documented by a metadata object, using their identifiers.
insertRelationship(URI, Predicate, URI) - Method in class org.dataone.client.v2.itk.DataPackage: Relate a given subject URI to an object URI using the given predicate.
insertRelationship(String, Predicate, URI) - Method in class org.dataone.client.v2.itk.DataPackage: Relate a given subject blank node to an object URI using the given predicate.
insertRelationship(URI, Predicate, List<URI>) - Method in class org.dataone.client.v2.itk.DataPackage: Relate a given subject URI to a list of object URIs using the given predicate.
insertRelationship(URI, Predicate, Object) - Method in class org.dataone.client.v2.itk.DataPackage: Relate a given subject URI to a literal using the given predicate.
insertRelationship(ResourceMap, Resource, Property, List<RDFNode>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Insert statements into the resource map graph using the given subject, predicate, and list of object URIs.
insertRelationship(ResourceMap, String, Property, List<RDFNode>) - Method in class org.dataone.ore.ProvResourceMapBuilder: Insert statements into the resource map graph using a blank (anonymous) node ID as the subject, a predicate, and a list of objects.
instance() - Static method in class org.dataone.client.v2.formats.ObjectFormatInfo: Get the single instance of this class, creating it when needed on first invocation.
instructionalMethod - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
InsufficientResources - Exception in org.dataone.service.exceptions: The DataONE InsufficientResources exception, raised when insufficient space, bandwidth, or other resources are available to complete a request.
InsufficientResources(String, String) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InvalidCredentials - Exception in org.dataone.service.exceptions: The DataONE InvalidCredentials exception, raised when a request is issued for which the credentials were not validated.
InvalidCredentials(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidRequest - Exception in org.dataone.service.exceptions: The DataONE InvalidRequest exception, raised when a request is issued for which one or more parameters provided in the call were invalid.
InvalidRequest(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidSystemMetadata - Exception in org.dataone.service.exceptions: The DataONE InvalidSystemMetadata exception, raised when a request is issued and the supplied system metadata is invalid.
InvalidSystemMetadata(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidToken - Exception in org.dataone.service.exceptions: The DataONE InvalidToken exception, raised when supplied authentication token could not be verified as being valid.
InvalidToken(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
ipAddress - Variable in class org.dataone.service.types.v1.LogEntry
ipAddress - Variable in class org.dataone.service.types.v2.LogEntry
isAgreedWithBy - Static variable in class org.dataone.vocabulary.CITO_263
isArchived(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
isAsyncStarted() - Method in class org.dataone.mimemultipart.MultipartRequest
isAsyncSupported() - Method in class org.dataone.mimemultipart.MultipartRequest
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.rest.MultipartD1Node
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.rest.MultipartD1Node
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.v1.impl.MultipartMNode
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.v1.impl.MultipartMNode
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.v2.impl.MultipartMNode
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.v2.impl.MultipartMNode
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v2.CNAuthorization
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization: Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v2.MNAuthorization
isAuthorized(Collection<Subject>, Permission, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Queries the systemMetadata to see if one of the given subjects is allowed the specified permission against the given systemMetadata
isCitedAsAuthorityBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsDataSourceBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsEvidenceBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsMetadataDocumentBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsPontentialSolutionBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsRecommendedReading - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsRelatedBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedAsSourceDocumentBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedBy - Static variable in class org.dataone.vocabulary.CITO_263
isCitedForInformationBy - Static variable in class org.dataone.vocabulary.CITO_263
isCNAuthorityForSystemMetadataUpdate(NodeList, SystemMetadata) - Static method in class org.dataone.service.types.v2.util.AuthUtils: the CN is the authority for systemMetadata updates only for v1 MNs that implement MNStorage services.
isCompiledBy - Static variable in class org.dataone.vocabulary.CITO_263
isComplete() - Method in class org.dataone.client.types.ObsoletesChain: An ObsoletesChain is complete when the earliest and latest links have no obsoletedBy and obsoletes, respectively.
isConfirmedBy - Static variable in class org.dataone.vocabulary.CITO_263
isCorrectedBy - Static variable in class org.dataone.vocabulary.CITO_263
isCreditedBy - Static variable in class org.dataone.vocabulary.CITO_263
isCritiquedBy - Static variable in class org.dataone.vocabulary.CITO_263
isDeridedBy - Static variable in class org.dataone.vocabulary.CITO_263
isDescribedBy - Static variable in class org.dataone.vocabulary.CITO_263
isDisagreedWithBy - Static variable in class org.dataone.vocabulary.CITO_263
isDiscussedBy - Static variable in class org.dataone.vocabulary.CITO_263
isDisputedBy - Static variable in class org.dataone.vocabulary.CITO_263
isDocumentedBy - Static variable in class org.dataone.vocabulary.CITO_263
isException() - Method in class org.dataone.service.util.ExceptionalInputStream
isExtendedBy - Static variable in class org.dataone.vocabulary.CITO_263
isFormatOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isLatestVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
isMemberOf - Variable in class org.dataone.service.types.v1.Person
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil: Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil: Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMultipartContent(HttpServletRequest) - Static method in class org.dataone.mimemultipart.MultipartRequestResolver
isNodeAuthorized(Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
isNodeAuthorized(Session, Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
isNodeAuthorized(Session, Subject, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
isNodeAuthorized(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNReplication
isParodiedBy - Static variable in class org.dataone.vocabulary.CITO_263
isPartOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isPlagiarizedBy - Static variable in class org.dataone.vocabulary.CITO_263
isQualifiedBy - Static variable in class org.dataone.vocabulary.CITO_263
isReferencedBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isRefutedBy - Static variable in class org.dataone.vocabulary.CITO_263
isReplacedBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isReplicate() - Method in class org.dataone.service.types.v1.Node: Get the 'replicate' attribute value.
isRequestedSessionIdFromCookie() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdFromURL() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdFromUrl() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdValid() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequiredBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isRetractedBy - Static variable in class org.dataone.vocabulary.CITO_263
isReturnable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'returnable' element value.
isReviewedBy - Static variable in class org.dataone.vocabulary.CITO_263
isRidiculedBy - Static variable in class org.dataone.vocabulary.CITO_263
isSearchable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'searchable' element value.
isSecure() - Method in class org.dataone.mimemultipart.MultipartRequest
isSortable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'sortable' element value.
isSpeculatedOnBy - Static variable in class org.dataone.vocabulary.CITO_263
issued - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
isSupportedBy - Static variable in class org.dataone.vocabulary.CITO_263
isSynchronize() - Method in class org.dataone.service.types.v1.Node: Get the 'synchronize' attribute value.
isUpdatedBy - Static variable in class org.dataone.vocabulary.CITO_263
isUserInRole(String) - Method in class org.dataone.mimemultipart.MultipartRequest
isUsingFallbackFormatList() - Method in class org.dataone.client.v2.formats.ObjectFormatCache: Returns true if the cache has not been able to successfully refresh from the CN
isVersionOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211

J

jaxbContextMap - Static variable in class org.dataone.service.util.TypeMarshaller
joinToUrlWith(String, String) - Method in class org.dataone.service.util.D1Url: use this method to avoid inadvertent duplication of the joining character The most common case is when a baseUrl contains a trailing slash and you want to append another path elements.
Jurisdiction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211

K

key - Variable in class org.dataone.service.types.v2.OptionList
key - Variable in class org.dataone.service.types.v2.Property

L

language - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
lastCompleteHarvest - Variable in class org.dataone.service.types.v1.Synchronization
lastHarvested - Variable in class org.dataone.service.types.v1.Synchronization
lastRefreshDate - Variable in class org.dataone.client.v2.formats.ObjectFormatCache
lastSuccess - Variable in class org.dataone.service.types.v1.Ping
latestIsArchived() - Method in class org.dataone.client.types.ObsoletesChain
latestRestClient - Variable in class org.dataone.client.rest.MultipartD1Node: the latest MRC used to make an API call
latestSession - Variable in class org.dataone.client.rest.MultipartD1Node
license - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
LicenseDocument - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
likes - Static variable in class org.dataone.vocabulary.CITO_263
LinguisticSystem - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
listChecksumAlgorithms() - Method in class org.dataone.client.v1.impl.MultipartCNode
listChecksumAlgorithms() - Method in class org.dataone.client.v2.impl.MultipartCNode
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v1.CNCore
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v2.CNCore
listD1Nodes() - Method in class org.dataone.client.NodeLocator: Returns the set of NodeReferences in the NodeLocator
listD1Nodes(NodeType) - Method in class org.dataone.client.NodeLocator: Returns the set of NodeReferences of D1Nodes matching the nodeType parameter
listFormats() - Method in class org.dataone.client.v1.impl.MultipartCNode
listFormats() - Method in class org.dataone.client.v2.formats.ObjectFormatCache: List the object formats registered with the object format service.
listFormats() - Method in class org.dataone.client.v2.impl.MultipartCNode
listFormats() - Method in interface org.dataone.service.cn.v1.CNCore
listFormats() - Method in interface org.dataone.service.cn.v2.CNCore
listFormats() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: List the object formats registered with the object format service.
listNodeIds() - Method in class org.dataone.client.v1.impl.MultipartCNode: Return the set of Node IDs for all of the nodes registered to the CN
listNodes() - Method in class org.dataone.client.v1.impl.MultipartCNode
listNodes() - Method in class org.dataone.client.v2.impl.MultipartCNode
listNodes() - Method in interface org.dataone.service.cn.v1.CNCore
listNodes() - Method in interface org.dataone.service.cn.v2.CNCore
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
listObjects(Session, Date, Date, ObjectFormatIdentifier, NodeReference, Identifier, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
listObjects(Session, Date, Date, ObjectFormatIdentifier, Identifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartMNode
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, NodeReference, Identifier, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNRead
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, Identifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
listQueryEngines(Session) - Method in class org.dataone.client.rest.MultipartD1Node
listQueryEngines() - Method in class org.dataone.client.v1.impl.MultipartCNode
listQueryEngines() - Method in class org.dataone.client.v1.impl.MultipartMNode
listQueryEngines() - Method in interface org.dataone.service.cn.v1.CNRead
listQueryEngines(Session) - Method in interface org.dataone.service.cn.v2.CNRead
listQueryEngines() - Method in interface org.dataone.service.mn.v1.MNQuery
listQueryEngines(Session) - Method in interface org.dataone.service.mn.v2.MNQuery
listSubjects(String, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
listSubjects(Session, String, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
listSubjects(Session, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
listSubjects(String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNIdentity
listUpdateHistory(Identifier) - Static method in class org.dataone.client.v1.itk.D1Client: Return the full ObsoletesChain for the given Identifier.
listViews(Session) - Method in class org.dataone.client.rest.MultipartD1Node
listViews() - Method in class org.dataone.client.v2.impl.MultipartCNode
listViews(Session) - Method in class org.dataone.client.v2.impl.MultipartMNode
listViews() - Method in interface org.dataone.service.cn.v2.CNView
listViews(Session) - Method in interface org.dataone.service.mn.v2.MNView
loadCertificate() - Method in class org.dataone.client.auth.CertificateManager: Load the configured certificate into the keystore singleton Follows the logic of first searching the certificate at the setCertificateLocation() location, then using the default location.
loadCertificateFromFile(String) - Method in class org.dataone.client.auth.CertificateManager: Load X509Certificate object from given file
loadKey() - Method in class org.dataone.client.auth.CertificateManager: Load configured private key from the keystore
loadPrivateKeyFromFile(String, String) - Method in class org.dataone.client.auth.CertificateManager: Load PrivateKey object from given file
locateDefaultCertificate() - Method in class org.dataone.client.auth.CertificateManager: Locate the default certificate.
Location - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
LocationPeriodOrJurisdiction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
log - Static variable in class org.dataone.client.auth.ClientIdentityManager
log - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
log - Static variable in class org.dataone.client.rest.MultipartD1Node
log - Static variable in class org.dataone.client.rest.RestClient
log - Static variable in class org.dataone.client.v1.impl.MultipartCNode
log - Static variable in class org.dataone.client.v1.impl.MultipartMNode
log - Static variable in class org.dataone.client.v2.impl.MultipartCNode
log - Static variable in class org.dataone.client.v2.impl.MultipartMNode
log - Static variable in class org.dataone.eml.DataoneEMLParser
Log - Class in org.dataone.service.types.v1: Represents a collection of :class:`Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v1.Log
Log - Class in org.dataone.service.types.v2: Extends :class:`Types.Log` to represent a collection of :class:`v2_0.Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v2.Log
log - Static variable in class org.dataone.service.util.ExceptionHandler
logEntry - Variable in class org.dataone.service.types.v1.Log
LogEntry - Class in org.dataone.service.types.v1: A single log entry as reported by a Member Node or Coordinating Node through the :func:`MNCore.getLogRecords` or :func:`CNCore.getLogRecords` methods.
LogEntry() - Constructor for class org.dataone.service.types.v1.LogEntry
logEntry - Variable in class org.dataone.service.types.v2.Log
LogEntry - Class in org.dataone.service.types.v2: Extends :class:`Types.LogEntry` by relaxing the value space for the *event* element.
LogEntry() - Constructor for class org.dataone.service.types.v2.LogEntry
logger - Static variable in class org.dataone.service.types.v1.TypeFactory
login(String, String) - Method in class org.dataone.mimemultipart.MultipartRequest
logout() - Method in class org.dataone.mimemultipart.MultipartRequest
lookupNodeBaseUrl(String) - Method in class org.dataone.client.v1.impl.MultipartCNode: Find the base URL for a Node based on the Node's identifier as it was registered with the Coordinating Node.
lookupNodeBaseUrl(NodeReference) - Method in class org.dataone.client.v1.impl.MultipartCNode: Find the base URL for a Node based on the Node's identifier as it was registered with the Coordinating Node.
lookupNodeId(String) - Method in class org.dataone.client.v1.impl.MultipartCNode: Find the node identifier for a Node based on the base URL that is used to access its services by looking up the registration for the node at the Coordinating Node.

M

main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleClient: Execute the examples.
main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleDataPackageUpload: Demonstrates copying data package from a source CN to a target MN.
main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleObjectDownload
main(String[]) - Static method in class org.dataone.client.v1.examples.SimpleHttpGetClient: A simple command line interface that exercises the HttpClient and CertificateManager to make a single HTTP/S GET call.
main(String[]) - Static method in class org.dataone.client.v2.examples.MultipleRead
mapIdentity(Subject, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
mapIdentity(Session, Subject, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
mapIdentity(Session, Subject, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
mapIdentity(Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
marshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
marshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter: a valid accessRule has at least one Permission and at least one Subject
marshal(Date) - Method in class org.dataone.service.util.DateMarshallingAdapter
marshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
MarshallingException - Exception in org.dataone.exceptions: A class to represent any exception during marshalling or unmarshalling data objects, typically org.dataone.service.types, but not exclusively.
MarshallingException() - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String, Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String, Throwable, boolean, boolean) - Constructor for exception org.dataone.exceptions.MarshallingException
marshalTypeToFile(Object, String) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided file.
marshalTypeToOutputStream(Object, OutputStream) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided outputStream.
marshalTypeToOutputStream(Object, OutputStream, String) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided outputStream.
MAX_CONNECTIONS - Static variable in class org.dataone.client.utils.HttpUtils: The maximum number of connections allowed in total by the HttpClient
MAX_CONNECTIONS_PER_ROUTE - Static variable in class org.dataone.client.utils.HttpUtils: The number of parallel connections allowed per route / server Use caution resetting this one: more is not better:
maxObjectSize - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
mday - Variable in class org.dataone.service.types.v1.Schedule
mediator - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
MediaType - Class in org.dataone.service.types.v2: Value drawn from the value space of IANA Media Types ( http://www.iana.org/assignments/media-types/media-types.xhtml ).
MediaType() - Constructor for class org.dataone.service.types.v2.MediaType
mediaType - Variable in class org.dataone.service.types.v2.ObjectFormat
mediaType - Variable in class org.dataone.service.types.v2.SystemMetadata
MediaType - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
MediaTypeOrExtent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
MediaTypeProperty - Class in org.dataone.service.types.v2: Additional optional properties for MediaType as described by IANA.
MediaTypeProperty() - Constructor for class org.dataone.service.types.v2.MediaTypeProperty
medium - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
methodName - Variable in class org.dataone.service.types.v1.ServiceMethodRestriction
MethodOfAccrual - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
MethodOfInstruction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
mimeType - Variable in class org.dataone.eml.EMLDocument.DistributionMetadata
min - Variable in class org.dataone.service.types.v1.Schedule
MNAuthorization - Interface in org.dataone.service.mn.tier2.v1: The DataONE Member Node Tier 2 Authorization interface.
MNAuthorization - Interface in org.dataone.service.mn.tier2.v2: The DataONE Member Node Tier 2 Authorization interface.
MNCore - Interface in org.dataone.service.mn.tier1.v1: The DataONE Member Node Tier 1 Core interface.
MNCore - Interface in org.dataone.service.mn.tier1.v2: The DataONE Member Node Tier 1 Core interface.
MNode - Interface in org.dataone.client.v1: An aggregated API that represents all of the possible services reachable at a Member Node, defined in the org.dataone.service.mn package.
MNode - Interface in org.dataone.client.v2: An aggregated API that represents all of the possible services reachable at a Member Node, defined in the org.dataone.service.mn package.
MNPackage - Interface in org.dataone.service.mn.v2: The DataONE Member Node Optional Package interface for providing complete data package contents in a standardized format (targeting BagIt).
MNQuery - Interface in org.dataone.service.mn.v1: The DataONE MemberNode Optional Query interface.
MNQuery - Interface in org.dataone.service.mn.v2: The DataONE MemberNode Optional Query interface.
MNRead - Interface in org.dataone.service.mn.tier1.v1: The DataONE Member Node Tier 1 Read interface.
MNRead - Interface in org.dataone.service.mn.tier1.v2: The DataONE Member Node Tier 1 Read interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v1: The DataONE Member Node Tier 4 Replication interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v2: The DataONE Member Node Tier 4 Replication interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v1: The DataONE Member Node Tier 3 Storage interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v2: The DataONE Member Node Tier 3 Storage interface.
MNView - Interface in org.dataone.service.mn.v2: The DataONE MemberNode Optional View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
modified - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
mon - Variable in class org.dataone.service.types.v1.Schedule
MONITOR_STALE_CONNECTIONS - Static variable in class org.dataone.client.utils.HttpUtils
MonitorInfo - Class in org.dataone.service.types.v1: A single log entry as reported by a Member Node or Coordinating Node through the getMonitorInfos methods.
MonitorInfo() - Constructor for class org.dataone.service.types.v1.MonitorInfo
MonitorList - Class in org.dataone.service.types.v1: Schema fragment(s) for this class:
MonitorList() - Constructor for class org.dataone.service.types.v1.MonitorList
MultipartCNode - Class in org.dataone.client.v1.impl: CNode represents a DataONE Coordinating Node, and allows calling classes to execute CN services.
MultipartCNode(String) - Constructor for class org.dataone.client.v1.impl.MultipartCNode: Deprecated.
MultipartCNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v1.impl.MultipartCNode: Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services.
MultipartCNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v1.impl.MultipartCNode: Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartCNode - Class in org.dataone.client.v2.impl: CNode represents a DataONE Coordinating Node, and allows calling classes to execute CN services.
MultipartCNode(String) - Constructor for class org.dataone.client.v2.impl.MultipartCNode: Deprecated.
MultipartCNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartCNode: Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services.
MultipartCNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartCNode: Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartD1Node - Class in org.dataone.client.rest: An abstract node class that contains base functionality shared between Coordinating Node and Member Node implementations.
MultipartD1Node(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.rest.MultipartD1Node: Users can set either a default RestClient or default Session that will build a RestClient configured appropriately from the information in the Session.
MultipartD1Node(MultipartRestClient, String) - Constructor for class org.dataone.client.rest.MultipartD1Node: Convenience constructor to create a new instance.
MultipartD1Node(Session, String) - Constructor for class org.dataone.client.rest.MultipartD1Node: Convenience constructor to create a new instance.
MultipartD1Node(String) - Constructor for class org.dataone.client.rest.MultipartD1Node: Deprecated.
MultipartD1Node() - Constructor for class org.dataone.client.rest.MultipartD1Node: Deprecated.
MultipartD1Node - Class in org.dataone.client.v2.impl: A v2-specific abstract subclass for new (non-v1) common methods.
MultipartD1Node(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node
MultipartD1Node(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node
MultipartD1Node(String) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node: Deprecated.
MultipartMNode - Class in org.dataone.client.v1.impl: MultipartMNode represents a MemberNode, and exposes the services associated with a DataONE Member Node, allowing calling clients to call the services associated with the node.
MultipartMNode(String) - Constructor for class org.dataone.client.v1.impl.MultipartMNode: Deprecated.
MultipartMNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v1.impl.MultipartMNode: Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services.
MultipartMNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v1.impl.MultipartMNode: Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartMNode - Class in org.dataone.client.v2.impl: MultipartMNode represents a MemberNode, and exposes the services associated with a DataONE Member Node, allowing calling clients to call the services associated with the node.
MultipartMNode(String) - Constructor for class org.dataone.client.v2.impl.MultipartMNode: Deprecated.
MultipartMNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartMNode: Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services.
MultipartMNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartMNode: Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartRequest - Class in org.dataone.mimemultipart: Wrap a HttpServletRequest and add two Map attributes to save Form Multipart files and Parameters.
MultipartRequest(HttpServletRequest, Map<String, File>, Map<String, List<String>>) - Constructor for class org.dataone.mimemultipart.MultipartRequest: Create a new MultipartParsingResult.
MultipartRequestResolver - Class in org.dataone.mimemultipart: DataOne conversion of HttpServletRequests into a DataONE MultipartRequest via Jakarta Commons FileUpload 1.2 or above.
MultipartRequestResolver() - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver: constructor.
MultipartRequestResolver(String) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
MultipartRequestResolver(String, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
MultipartRequestResolver(String, int, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
MultipartRestClient - Interface in org.dataone.client.rest: The primary interface to use when constructing DataONE API requests.
multipartRestClient - Static variable in class org.dataone.client.v1.itk.D1Client
multipartRestClient - Static variable in class org.dataone.client.v2.itk.D1Client
MultipleRead - Class in org.dataone.client.v2.examples
MultipleRead() - Constructor for class org.dataone.client.v2.examples.MultipleRead
multivalued - Variable in class org.dataone.service.types.v1_1.QueryField

N

name - Variable in class org.dataone.service.types.v1.Node
name - Variable in class org.dataone.service.types.v1.Service
name - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
name - Variable in class org.dataone.service.types.v1_1.QueryField
name - Variable in class org.dataone.service.types.v2.MediaType
name - Variable in class org.dataone.service.types.v2.MediaTypeProperty
namespace - Static variable in class org.dataone.vocabulary.CITO_263
namespace - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
namespace - Static variable in class org.dataone.vocabulary.PROV
namespace - Static variable in class org.dataone.vocabulary.ProvONE_V1: the ProvONE namespace URI
nextVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
Node - Class in org.dataone.service.types.v1: A set of values that describe a member or coordinating node, its Internet location, and the services it supports.
Node() - Constructor for class org.dataone.service.types.v1.Node
node - Variable in class org.dataone.service.types.v1.NodeList
Node - Class in org.dataone.service.types.v2: Extends the Version 1.x :class:`Types.Node` by adding an optional unbounded parameter entry providing additional simple metadata relevant to a Node.
Node() - Constructor for class org.dataone.service.types.v2.Node
node - Variable in class org.dataone.service.types.v2.NodeList
nodeIdentifier - Variable in class org.dataone.service.types.v1.LogEntry
nodeIdentifier - Variable in class org.dataone.service.types.v1.ObjectLocation
nodeIdentifier - Variable in class org.dataone.service.types.v2.LogEntry
nodeList - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
nodeList - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
NodeList - Class in org.dataone.service.types.v1: A list of :class:`Types.Node` entries returned by :func:`CNCore.listNodes()`.NodeList is described in :mod:`NodeList`.
NodeList() - Constructor for class org.dataone.service.types.v1.NodeList
NodeList - Class in org.dataone.service.types.v2: A list of :class:`v2_0.Types.Node` entries returned by :func:`CNCore.listNodes()`.
NodeList() - Constructor for class org.dataone.service.types.v2.NodeList
NodeListNodeLocator - Class in org.dataone.client.v1.impl: This implementation of NodeLocator uses a NodeList document to populate the internal maps that have all of the registered MNodes and CNodes, instead of relying on the put methods.
NodeListNodeLocator(NodeList, MultipartRestClient) - Constructor for class org.dataone.client.v1.impl.NodeListNodeLocator: The constructor populates the NodeLocator from MN and CN nodes from the give Nodelist, building D1Node implementations using the MultipartRestClient.
NodeListNodeLocator - Class in org.dataone.client.v2.impl: This implementation of NodeLocator uses a NodeList document to populate the internal maps that have all of the registered MNodes and CNodes, instead of relying on the put methods.
NodeListNodeLocator(NodeList, MultipartRestClient) - Constructor for class org.dataone.client.v2.impl.NodeListNodeLocator: The constructor populates the NodeLocator from MN and CN nodes from the give Nodelist, building D1Node implementations using the MultipartRestClient.
NodelistUtil - Class in org.dataone.service.types.v1.util: Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v1.util.NodelistUtil
NodelistUtil - Class in org.dataone.service.types.v2.util: Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v2.util.NodelistUtil
NodeLocator - Class in org.dataone.client: An abstract Service Locator class to resolve NodeReferences into MNode or CNode objects.
NodeLocator() - Constructor for class org.dataone.client.NodeLocator
nodeMap - Variable in class org.dataone.client.NodeLocator: this property can be re-initialized by concrete subclasses
NodeReference - Class in org.dataone.service.types.v1: A unique identifier for a DataONE Node.
NodeReference() - Constructor for class org.dataone.service.types.v1.NodeReference
nodeReplicationPolicy - Variable in class org.dataone.service.types.v1.Node
NodeReplicationPolicy - Class in org.dataone.service.types.v1: The overall replication policy for the node that expresses constraints on object size, total objects, source nodes, and object format types.
NodeReplicationPolicy() - Constructor for class org.dataone.service.types.v1.NodeReplicationPolicy
NodeState - Enum in org.dataone.service.types.v1: An indicator of the current node accessibility.
nodeType - Variable in class org.dataone.client.rest.MultipartD1Node
NodeType - Enum in org.dataone.service.types.v1: The type of this node, which is either *mn* for Member Nodes, or *cn* for Coordinating Nodes.
NotAuthorized - Exception in org.dataone.service.exceptions: The DataONE NotAuthorized exception, raised when the supplied identity information is not authorized for the requested operation.
NotAuthorized(String, String) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotCached - Exception in org.dataone.client.exception: NotCached is thrown when an object is retrieved from a cache and found to not have been placed in the cache.
NotCached(String) - Constructor for exception org.dataone.client.exception.NotCached: Construct a NotCached exception with the message.
NotFound - Exception in org.dataone.service.exceptions: The DataONE NotFound exception, raised when an object is not present on the node where the exception was raised.
NotFound(String, String) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotImplemented - Exception in org.dataone.service.exceptions: The DataONE NotImplemented exception, raised when a request is issued for a service that is not implemented by this node.
NotImplemented(String, String) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
numberReplicas - Variable in class org.dataone.service.types.v1.ReplicationPolicy

O

ObjectFactory - Class in org.dataone.service.types.v1: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v1_1: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1_1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1_1.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v2: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v2 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v2.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v2
ObjectFormat - Class in org.dataone.service.types.v1: One value from the DataONE Object Format Vocabulary which is returned by :func:`CNCore.getFormat()`.An *ObjectFormat* is the structure returned from the :func:`CNCore.getFormat()` method of the CN REST interface.
ObjectFormat() - Constructor for class org.dataone.service.types.v1.ObjectFormat
objectFormat - Variable in class org.dataone.service.types.v1.ObjectFormatList
ObjectFormat - Class in org.dataone.service.types.v2: Extends Version 1.x :class:`Types.ObjectFormat` by adding :term:`mediaType` and :term:`extension` elements.
ObjectFormat() - Constructor for class org.dataone.service.types.v2.ObjectFormat
objectFormat - Variable in class org.dataone.service.types.v2.ObjectFormatList
ObjectFormatCache - Class in org.dataone.client.v2.formats: The ObjectFormatCache is a wrapper class for the DataONE ObjectFormatList type.
ObjectFormatIdentifier - Class in org.dataone.service.types.v1: A string used to identify an instance of :class:`Types.ObjectFormat` and MUST be unique within an instance of :class:`Types.ObjectFormatList`.
ObjectFormatIdentifier() - Constructor for class org.dataone.service.types.v1.ObjectFormatIdentifier
ObjectFormatInfo - Class in org.dataone.client.v2.formats: A singleton class that provides metadata about object formats, such as the MIME type and file extensions associated with a particular format.
ObjectFormatList - Class in org.dataone.service.types.v1: An ObjectFormatList is the structure returned from the :func:`CNCore.listFormats()` method of the CN REST interface.
ObjectFormatList() - Constructor for class org.dataone.service.types.v1.ObjectFormatList
ObjectFormatList - Class in org.dataone.service.types.v2: Extends :class:`Types.ObjectFormatList` to provide a list of :class:`v2_0.Types.ObjectFormat`.
ObjectFormatList() - Constructor for class org.dataone.service.types.v2.ObjectFormatList
objectFormatList - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
objectFormatMap - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
ObjectFormatServiceImpl - Class in org.dataone.service.types.v2.util
ObjectFormatServiceImpl() - Constructor for class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
ObjectInfo - Class in org.dataone.service.types.v1: Metadata about an object, representing a subset of the metadata found in :class:`Types.SystemMetadata`.
ObjectInfo() - Constructor for class org.dataone.service.types.v1.ObjectInfo
ObjectList - Class in org.dataone.service.types.v1: A list of object locations (nodes) from which the object can be retrieved.
ObjectList() - Constructor for class org.dataone.service.types.v1.ObjectList
ObjectLocation - Class in org.dataone.service.types.v1: Portion of an :class:`Types.ObjectLocationList` indicating the node from which the object can be retrieved.
ObjectLocation() - Constructor for class org.dataone.service.types.v1.ObjectLocation
objectLocation - Variable in class org.dataone.service.types.v1.ObjectLocationList
ObjectLocationList - Class in org.dataone.service.types.v1: An *ObjectLocationList* is the structure returned from the :func:`CNRead.resolve` method of the CN REST interface.
ObjectLocationList() - Constructor for class org.dataone.service.types.v1.ObjectLocationList
observeCertificateManager() - Method in class org.dataone.client.rest.DefaultHttpMultipartRestClient
obsoletedBy - Variable in class org.dataone.service.types.v1.SystemMetadata
obsoletes - Variable in class org.dataone.service.types.v1.SystemMetadata
ObsoletesChain - Class in org.dataone.client.types: An object meant to contain information on the history of an object, including all of the objects the given pid obsoletes, and objects that obsolete it.
ObsoletesChain(Identifier) - Constructor for class org.dataone.client.types.ObsoletesChain
obtainsBackgroundFrom - Static variable in class org.dataone.vocabulary.CITO_263
obtainsSupportFrom - Static variable in class org.dataone.vocabulary.CITO_263
option - Variable in class org.dataone.service.types.v2.OptionList
OptionList - Class in org.dataone.service.types.v2: A list of options that indicate the possible values for a DataONE service.
OptionList() - Constructor for class org.dataone.service.types.v2.OptionList
org.dataone.client - package org.dataone.client
org.dataone.client.auth - package org.dataone.client.auth
org.dataone.client.exception - package org.dataone.client.exception
org.dataone.client.rest - package org.dataone.client.rest
org.dataone.client.types - package org.dataone.client.types
org.dataone.client.utils - package org.dataone.client.utils
org.dataone.client.v1 - package org.dataone.client.v1
org.dataone.client.v1.examples - package org.dataone.client.v1.examples
org.dataone.client.v1.impl - package org.dataone.client.v1.impl
org.dataone.client.v1.itk - package org.dataone.client.v1.itk
org.dataone.client.v1.types - package org.dataone.client.v1.types
org.dataone.client.v2 - package org.dataone.client.v2
org.dataone.client.v2.examples - package org.dataone.client.v2.examples
org.dataone.client.v2.formats - package org.dataone.client.v2.formats: Package org.dataone.client.formats defines a set of utility classes for accessing information about ObjectFormats that is useful in constructing nodes and clients.
org.dataone.client.v2.impl - package org.dataone.client.v2.impl
org.dataone.client.v2.itk - package org.dataone.client.v2.itk
org.dataone.client.v2.types - package org.dataone.client.v2.types
org.dataone.configuration - package org.dataone.configuration
org.dataone.eml - package org.dataone.eml
org.dataone.exceptions - package org.dataone.exceptions
org.dataone.mimemultipart - package org.dataone.mimemultipart
org.dataone.ore - package org.dataone.ore
org.dataone.service.cn.v1 - package org.dataone.service.cn.v1
org.dataone.service.cn.v2 - package org.dataone.service.cn.v2
org.dataone.service.exceptions - package org.dataone.service.exceptions
org.dataone.service.mn.tier1.v1 - package org.dataone.service.mn.tier1.v1
org.dataone.service.mn.tier1.v2 - package org.dataone.service.mn.tier1.v2
org.dataone.service.mn.tier2.v1 - package org.dataone.service.mn.tier2.v1
org.dataone.service.mn.tier2.v2 - package org.dataone.service.mn.tier2.v2
org.dataone.service.mn.tier3.v1 - package org.dataone.service.mn.tier3.v1
org.dataone.service.mn.tier3.v2 - package org.dataone.service.mn.tier3.v2
org.dataone.service.mn.tier4.v1 - package org.dataone.service.mn.tier4.v1
org.dataone.service.mn.tier4.v2 - package org.dataone.service.mn.tier4.v2
org.dataone.service.mn.v1 - package org.dataone.service.mn.v1
org.dataone.service.mn.v2 - package org.dataone.service.mn.v2
org.dataone.service.types.v1 - package org.dataone.service.types.v1
org.dataone.service.types.v1.comparators - package org.dataone.service.types.v1.comparators
org.dataone.service.types.v1.util - package org.dataone.service.types.v1.util
org.dataone.service.types.v1_1 - package org.dataone.service.types.v1_1
org.dataone.service.types.v2 - package org.dataone.service.types.v2
org.dataone.service.types.v2.util - package org.dataone.service.types.v2.util
org.dataone.service.util - package org.dataone.service.util
org.dataone.vocabulary - package org.dataone.vocabulary
originMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata

P

parodies - Static variable in class org.dataone.vocabulary.CITO_263
parseDocument(InputStream) - Method in class org.dataone.eml.DataoneEMLParser: parse an eml document and return any distribution urls
parseResourceMap(String) - Method in class org.dataone.ore.ResourceMapFactory: Parses the string containing serialized form into the Map representation used by the org.dataone.client.DataPackage class.
parseResourceMap(InputStream) - Method in class org.dataone.ore.ResourceMapFactory: Parses the input stream from the serialized form into the Map representation used by the org.dataone.client.DataPackage class.
PeriodOfTime - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
permission - Variable in class org.dataone.service.types.v1.AccessRule
Permission - Enum in org.dataone.service.types.v1: Java class for Permission.
Person - Class in org.dataone.service.types.v1: *Person* represents metadata about a :term:`Principal` that is a person and that can be used by clients and nodes for :class:`Types.AccessPolicy` information.
Person() - Constructor for class org.dataone.service.types.v1.Person
person - Variable in class org.dataone.service.types.v1.SubjectInfo
PersonFamilyNameComparator - Class in org.dataone.service.types.v1.comparators: A comparator for comparing the Person objects based on the FamilyName property (String).
PersonFamilyNameComparator() - Constructor for class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator
PhysicalMedium - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
PhysicalResource - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
ping() - Method in class org.dataone.client.rest.MultipartD1Node
ping() - Method in class org.dataone.client.v1.impl.MultipartMNode
ping() - Method in class org.dataone.client.v2.impl.MultipartMNode
ping() - Method in interface org.dataone.service.cn.v1.CNCore
ping() - Method in interface org.dataone.service.cn.v2.CNCore
ping() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
ping() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
ping - Variable in class org.dataone.service.types.v1.Node
Ping - Class in org.dataone.service.types.v1: Store results from the :func:`MNCore.ping` method.
Ping() - Constructor for class org.dataone.service.types.v1.Ping
plagiarizes - Static variable in class org.dataone.vocabulary.CITO_263
Policy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
Port - Static variable in class org.dataone.vocabulary.ProvONE_V1
POST - Static variable in class org.dataone.service.util.Constants: HTTP Verb POST
predicate(String) - Static method in class org.dataone.vocabulary.CITO_263: For a given CITO property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211: For a given DC Terms property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.PROV: For a given PROV property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.ProvONE_V1: For a given ProvONE property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
preference - Variable in class org.dataone.service.types.v1.ObjectLocation
preferredMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
prefix - Static variable in class org.dataone.vocabulary.CITO_263
prefix - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
prefix - Static variable in class org.dataone.vocabulary.PROV
prefix - Static variable in class org.dataone.vocabulary.ProvONE_V1: A reasonable ProvONE namespace prefix
previousVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
Program - Static variable in class org.dataone.vocabulary.ProvONE_V1: Classes defined in the ProvONE model
properties - Static variable in class org.dataone.vocabulary.CITO_263
properties - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
properties - Static variable in class org.dataone.vocabulary.PROV
properties - Static variable in class org.dataone.vocabulary.ProvONE_V1: The known object properties in the ProvONE model
property - Variable in class org.dataone.service.types.v2.MediaType
property - Variable in class org.dataone.service.types.v2.Node
Property - Class in org.dataone.service.types.v2: Additional Property elements can be included to describe the Node in more detail.
Property() - Constructor for class org.dataone.service.types.v2.Property
property(String) - Static method in class org.dataone.vocabulary.CITO_263: Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211: Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.PROV: Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.ProvONE_V1: Return a Jena Property instance for the given localName term
PROV - Class in org.dataone.vocabulary: Provides select static terms for the PROV ontology used in ProvONE constructs
PROV() - Constructor for class org.dataone.vocabulary.PROV
provenance - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
ProvenanceStatement - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
providesAssertionFor - Static variable in class org.dataone.vocabulary.CITO_263
providesConclusionsFor - Static variable in class org.dataone.vocabulary.CITO_263
providesDataFor - Static variable in class org.dataone.vocabulary.CITO_263
providesExcerptFor - Static variable in class org.dataone.vocabulary.CITO_263
providesMethodFor - Static variable in class org.dataone.vocabulary.CITO_263
providesQuotationFor - Static variable in class org.dataone.vocabulary.CITO_263
ProvONE - Class in org.dataone.vocabulary: Provides static terms for the current (V1) ProvONE extensions to the PROV ontology
ProvONE() - Constructor for class org.dataone.vocabulary.ProvONE
ProvONE_V1 - Class in org.dataone.vocabulary: Provides static terms for the ProvONE extensions to the PROV ontology
ProvONE_V1() - Constructor for class org.dataone.vocabulary.ProvONE_V1
ProvResourceMapBuilder - Class in org.dataone.ore: A Resource Map builder with methods for adding provenance or other statements about resource in an ORE aggregation.
ProvResourceMapBuilder() - Constructor for class org.dataone.ore.ProvResourceMapBuilder
PUBLIC_SUBJECT - Static variable in class org.dataone.service.util.Constants: Deprecated.
publisher - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
PUT - Static variable in class org.dataone.service.util.Constants: HTTP Verb PUT
putNode(NodeReference, D1Node) - Method in class org.dataone.client.NodeLocator: Puts a constructed node into the NodeLocator.

Q

qualifiedAssociation - Static variable in class org.dataone.vocabulary.PROV
qualifiedGeneration - Static variable in class org.dataone.vocabulary.PROV
qualifiedUsage - Static variable in class org.dataone.vocabulary.PROV
qualifies - Static variable in class org.dataone.vocabulary.CITO_263
query(Session, String, String) - Method in class org.dataone.client.rest.MultipartD1Node: As with the sister query() method that takes a D1Url, the contents of encodedQuery will be joined to the url with as follows: /{queryEngine}/{encodedQuery} Note: Users will need to provide the '?' where appropriate to mark the beginning of the url-query portion.
query(String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode
query(String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
query(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
query(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
query(String, String) - Method in interface org.dataone.service.mn.v1.MNQuery
query(Session, String, String) - Method in interface org.dataone.service.mn.v2.MNQuery
queryEngine - Variable in class org.dataone.service.types.v1_1.QueryEngineList
QueryEngineDescription - Class in org.dataone.service.types.v1_1: Describes a query engine that can be used to search content on the node.
QueryEngineDescription() - Constructor for class org.dataone.service.types.v1_1.QueryEngineDescription
QueryEngineList - Class in org.dataone.service.types.v1_1: A list of query engine names that indicate the possible values for CNRead.getQueryEngineDescription and CNRead.query REST API endpoints.
QueryEngineList() - Constructor for class org.dataone.service.types.v1_1.QueryEngineList
queryEngineVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
queryField - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
QueryField - Class in org.dataone.service.types.v1_1: Schema fragment(s) for this class:
QueryField() - Constructor for class org.dataone.service.types.v1_1.QueryField
querySchemaVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription

R

rc - Variable in class org.dataone.client.rest.HttpMultipartRestClient
recastClientSideExceptionToServiceFailure(Exception) - Static method in class org.dataone.client.utils.ExceptionUtils: A helper function to preserve the stackTrace when catching one error and throwing a new one.
recastDataONEExceptionToServiceFailure(BaseException) - Static method in class org.dataone.client.utils.ExceptionUtils: A helper function for recasting DataONE exceptions to ServiceFailures while preserving the detail code and TraceDetails.
references - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
refreshCache() - Method in class org.dataone.client.v2.formats.ObjectFormatCache: refreshes the cache from the CN or if a CN copy cannot be obtains, temporarily uses a static ObjectFormatList included in the libclient_java jar, accessed via org.dataone.service.types.v2.util.ObjectFormatServiceImpl.
refreshSystemMetadata(Integer) - Method in class org.dataone.client.v1.itk.D1Object: refresh the SystemMetadata of this object, first trying the CN, then the authoritative MN.
refreshSystemMetadata(Integer) - Method in class org.dataone.client.v2.itk.D1Object: refresh the SystemMetadata of this object, first trying the CN, then the authoritative MN.
refutes - Static variable in class org.dataone.vocabulary.CITO_263
register(Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
register(Session, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
register(Session, Node) - Method in class org.dataone.client.v2.impl.MultipartCNode
register(Node) - Method in interface org.dataone.service.cn.v1.CNRegister
register(Session, Node) - Method in interface org.dataone.service.cn.v1.CNRegister: Deprecated.
register(Session, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
registerAccount(Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
registerAccount(Session, Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
registerAccount(Session, Person) - Method in class org.dataone.client.v2.impl.MultipartCNode
registerAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
registerCertificate(String, X509Certificate, PrivateKey) - Method in class org.dataone.client.auth.CertificateManager: Register certificates to be used by getSSLSocketFactory(subject) for setting up connections, using the subject as the lookup key
registerDefaultCertificate() - Method in class org.dataone.client.auth.CertificateManager: Registers the default certificate into the registry, using first the setLocation or if null, the default CILogon location.
registerSystemMetadata(Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
registerSystemMetadata(Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
relation - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
reload() - Static method in class org.dataone.client.v2.formats.ObjectFormatInfo: Cause the ObjectFormatInfo to reload its data, which enables a calling application to programatically modify the underlying mapping data and then reload the mappings in this class for use without restarting the application.
remove(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Deprecated.
renaming to removeData(Identifier id) for naming consistency with addData, addAndDownloadData
remove(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Deprecated.
renaming to removeData(Identifier id) for naming consistency with addData, addAndDownloadData
removeAccess(Subject[]) - Method in class org.dataone.client.types.AccessPolicyEditor: Removes the specified Subjects from the AccessPolicy
removeAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
removeData(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage: Removes a D1Object from the local data store based on its Identifier.
removeData(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage: Removes a D1Object from the local data store based on its Identifier.
removeMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
removeMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
removeMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
removeMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
removeMonitor(HttpClientConnectionManager) - Method in class org.dataone.client.utils.HttpConnectionMonitorService: remove a ConnectionManager from monitoring Not sure of the use case for it, since we need to keep all of the ConnectionManagers around until application shutdown, where-upon we close all connection managers.
replaces - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
Replica - Class in org.dataone.service.types.v1: Replica information that describes the existence of a replica of some object managed by the DataONE infrastructure, and its status.
Replica() - Constructor for class org.dataone.service.types.v1.Replica
replica - Variable in class org.dataone.service.types.v1.SystemMetadata
replicaMemberNode - Variable in class org.dataone.service.types.v1.Replica
replicate(SystemMetadata, NodeReference) - Method in class org.dataone.client.v1.impl.MultipartMNode
replicate(Session, SystemMetadata, NodeReference) - Method in class org.dataone.client.v1.impl.MultipartMNode
replicate(Session, SystemMetadata, NodeReference) - Method in class org.dataone.client.v2.impl.MultipartMNode
replicate(SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication: Deprecated.
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v2.MNReplication
replicate - Variable in class org.dataone.service.types.v1.Node
replicationAllowed - Variable in class org.dataone.service.types.v1.ReplicationPolicy
ReplicationPolicy - Class in org.dataone.service.types.v1: The *ReplicationPolicy* for an object defines if replication should be attempted for this object, and if so, how many replicas should be maintained.
ReplicationPolicy() - Constructor for class org.dataone.service.types.v1.ReplicationPolicy
replicationPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
ReplicationPolicyMarshallingAdapter - Class in org.dataone.service.util
ReplicationPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
replicationStatus - Variable in class org.dataone.service.types.v1.Replica
ReplicationStatus - Enum in org.dataone.service.types.v1: An enumerated string value indicating the current state of a replica of an object.
replicaVerified - Variable in class org.dataone.service.types.v1.Replica
repliesTo - Static variable in class org.dataone.vocabulary.CITO_263
reportSubtypesListing(Object, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: Generates a tabular listing of the field names and values, suitable for display.
requestMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
requestMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
requestMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
requestMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
requires - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
reserveIdentifier(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
reserveIdentifier(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
reserveIdentifier(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
reserveIdentifier(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
resolve(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
resolve(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
resolve(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
resolve(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
resolveMultipart(HttpServletRequest) - Method in class org.dataone.mimemultipart.MultipartRequestResolver: get the parts of a
resource(String) - Static method in class org.dataone.vocabulary.CITO_263: Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211: Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.PROV: Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.ProvONE_V1: Return a Jena Resource instance for the given localName term
RESOURCE_ACCESS - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API resource which handles access operations
RESOURCE_ACCOUNT_MAPPING - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-mapping operations
RESOURCE_ACCOUNT_MAPPING_PENDING - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-mapping request operations
RESOURCE_ACCOUNT_VERIFICATION - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-verification request operations
RESOURCE_ACCOUNTS - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account operations
RESOURCE_ARCHIVE - Static variable in class org.dataone.service.util.Constants: Common API resource which handles archive operations
RESOURCE_AUTHORIZATION - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API Resource which handles authorization checks
RESOURCE_CHECKSUM - Static variable in class org.dataone.service.util.Constants: READ API resource which handles checksum operations
RESOURCE_DIAG_OBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic object echoing operations
RESOURCE_DIAG_SUBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic credential echoing operations
RESOURCE_DIAG_SYSMETA - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic sysmeta echoing operations
RESOURCE_ERROR - Static variable in class org.dataone.service.util.Constants: READ API resource which handles synchronization error operations
RESOURCE_FORMATS - Static variable in class org.dataone.service.util.Constants: CORE API Resource which handles object formats operations
RESOURCE_GENERATE - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles identifier generation operations
RESOURCE_GROUPS - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles group-related operations
RESOURCE_GROUPS_REMOVE - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles group-member-remove operations
RESOURCE_LOG - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles logging operations
RESOURCE_META - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata operations
RESOURCE_META_CHANGED - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata update operations
RESOURCE_META_OBSOLETEDBY - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata update operations
RESOURCE_MONITOR_EVENT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles event monitoring operations
RESOURCE_MONITOR_OBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles object monitoring operations
RESOURCE_MONITOR_PING - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles ping monitoring operations
RESOURCE_MONITOR_STATUS - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles status monitoring operations
RESOURCE_NODE - Static variable in class org.dataone.service.util.Constants: Common API resource which handles node operations
RESOURCE_OBJECTS - Static variable in class org.dataone.service.util.Constants: Common API resource which handles document operations
RESOURCE_OWNER - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API Resource which handles owner checks
RESOURCE_PACKAGES - Static variable in class org.dataone.service.util.Constants: Common API resource which handles package operations
RESOURCE_QUERY - Static variable in class org.dataone.service.util.Constants: Common API resource which handles query operations
RESOURCE_RELATIONSHIP - Static variable in class org.dataone.service.util.Constants: READ API resource which handles relationship assertion operations
RESOURCE_REPLICAS - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint representing the replicas collection
RESOURCE_REPLICATE - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication initiation
RESOURCE_REPLICATION_AUTHORIZED - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication authorization
RESOURCE_REPLICATION_DELETE_REPLICA - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replica deletes
RESOURCE_REPLICATION_META - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication metadata updates
RESOURCE_REPLICATION_NOTIFY - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication status updates
RESOURCE_REPLICATION_POLICY - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication policy updates
RESOURCE_RESERVE - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles identifier reserving operations
RESOURCE_RESOLVE - Static variable in class org.dataone.service.util.Constants: READ API resource which handles resolve operations
RESOURCE_SEARCH - Static variable in class org.dataone.service.util.Constants: Common API resource which handles search operations
RESOURCE_SYNCHRONIZE - Static variable in class org.dataone.service.util.Constants: API resource which handles synchronize operations
RESOURCE_VIEWS - Static variable in class org.dataone.service.util.Constants: Common API resource which handles view operations
ResourceMapFactory - Class in org.dataone.ore: A utility for serializing and deserializing Resource Maps used by DataONE, following the conventions and constraints detailed in https://purl.dataone.org/architecturev2/design/DataPackage.html Note: DataONE uses the serialized form of ResourceMaps to persist the relationships between metadata objects and the data objects they document, and builds a ResourceMap as an intermediate form to derive the relationships into a simpler "identifier map" representation.
RestClient - Class in org.dataone.client.rest: A generic client class that contains base functionality for making REST calls to remote REST servers.
RestClient(HttpClient) - Constructor for class org.dataone.client.rest.RestClient: Default constructor to create a new instance.
restriction - Variable in class org.dataone.service.types.v1.Service
retracts - Static variable in class org.dataone.vocabulary.CITO_263
returnable - Variable in class org.dataone.service.types.v1_1.QueryField
reviews - Static variable in class org.dataone.vocabulary.CITO_263
ridicules - Static variable in class org.dataone.vocabulary.CITO_263
rights - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
rightsHolder - Variable in class org.dataone.service.types.v1.Group
rightsHolder - Variable in class org.dataone.service.types.v1.SystemMetadata
rightsHolder - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
RightsStatement - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
run() - Method in class org.dataone.client.utils.HttpConnectionMonitorService

S

Schedule - Class in org.dataone.service.types.v1: The schedule on which :term:`synchronization` will run for a particular node.
Schedule() - Constructor for class org.dataone.service.types.v1.Schedule
schedule - Variable in class org.dataone.service.types.v1.Synchronization
SCHEME_NAME - Static variable in class org.dataone.client.utils.HttpUtils
search(String, D1Url) - Method in class org.dataone.client.v1.impl.MultipartCNode: A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, D1Url) - Method in class org.dataone.client.v1.impl.MultipartCNode: A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode: see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(Session, String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode: see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(String, D1Url) - Method in class org.dataone.client.v2.impl.MultipartCNode: A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, D1Url) - Method in class org.dataone.client.v2.impl.MultipartCNode: A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, String) - Method in class org.dataone.client.v2.impl.MultipartCNode: see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
search(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
search(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
searchable - Variable in class org.dataone.service.types.v1_1.QueryField
sec - Variable in class org.dataone.service.types.v1.Schedule
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that contain the provided Subject.
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that contain the provided Subject.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that are in the provided state.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that are in the provided state.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
selectSession(String) - Method in class org.dataone.client.auth.CertificateManager: Select the X509Session using the provided subjectString to search among the registered certificates.
selectSession(String) - Static method in class org.dataone.client.utils.HttpUtils
serialize(int) - Method in exception org.dataone.service.exceptions.BaseException: Serialize the format in XML, JSON, or HTML format.
serializeBigInteger(BigInteger) - Static method in class org.dataone.service.util.BigIntegerMarshaller
serializeDateToUTC(Date) - Static method in class org.dataone.service.util.DateTimeMarshaller: convert a date to GMT
serializePackage() - Method in class org.dataone.client.v1.itk.DataPackage: Return an ORE ResourceMap describing this package, serialized as an RDF graph.
serializePackage() - Method in class org.dataone.client.v2.itk.DataPackage: Return an ORE ResourceMap describing this package, serialized as an RDF graph.
serializeResourceMap(ResourceMap) - Method in class org.dataone.ore.ResourceMapFactory: Serialize the ResourceMap
serialVersion - Variable in class org.dataone.service.types.v1.SystemMetadata
seriesId - Variable in class org.dataone.service.types.v2.SystemMetadata
Service - Class in org.dataone.service.types.v1: The available Dataone Service APIs that are exposed on a Node.
Service() - Constructor for class org.dataone.service.types.v1.Service
service - Variable in class org.dataone.service.types.v1.Services
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v1.CNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v2.CNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v1.MNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v2.MNCore
ServiceFailure - Exception in org.dataone.service.exceptions: The DataONE ServiceFailure exception, raised when a requested service was called but failed to execute the service request due to an internal error, such as misconfiguration, or a missing resource such as a missing data connection, etc.
ServiceFailure(String, String) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceMethodRestriction - Class in org.dataone.service.types.v1: Describes an optional restriction policy for a given method.
ServiceMethodRestriction() - Constructor for class org.dataone.service.types.v1.ServiceMethodRestriction
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v1.util: Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v2.util: Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil
services - Variable in class org.dataone.service.types.v1.Node
Services - Class in org.dataone.service.types.v1: A list of services that are provided by a node.
Services() - Constructor for class org.dataone.service.types.v1.Services
Session - Class in org.dataone.service.types.v1: Information about the authenticated session for a service transaction.
Session() - Constructor for class org.dataone.service.types.v1.Session
setAccess(Subject[], Permission) - Method in class org.dataone.client.types.AccessPolicyEditor
setAccessPolicy(Identifier, AccessPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
setAccessPolicy(Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization: Deprecated.
use CNCore.updateSystemMetadata()
setAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'accessPolicy' element value.
setAdditionalInfoList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the list of 'additionalInfo' element items.
setAlgorithm(String) - Method in class org.dataone.service.types.v1.Checksum: Set the 'algorithm' attribute value.
setAlgorithmList(List<String>) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Set the list of 'algorithm' element items.
setAllowedNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the list of 'allowedNode' element items.
setAllowedObjectFormatList(List<ObjectFormatIdentifier>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the list of 'allowedObjectFormat' element items.
setAllowList(List<AccessRule>) - Method in class org.dataone.service.types.v1.AccessPolicy: Set the list of 'allow' element items.
setArchived(Boolean) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'archived' element value.
setAttribute(String, Object) - Method in class org.dataone.mimemultipart.MultipartRequest
setAuthoritativeMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'authoritativeMemberNode' element value.
setAvailable(Boolean) - Method in class org.dataone.service.types.v1.Service: Set the 'available' attribute value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.Node: Set the 'baseURL' element value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'baseURL' element value.
setBaseUrl(String) - Method in class org.dataone.service.util.D1Url
setBlockedMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the list of 'blockedMemberNode' element items.
setCertificateLocation(String) - Method in class org.dataone.client.auth.CertificateManager: Use this method to set the certificate to point CertificateManager to a certificate at the designated file-path.
setCharacterEncoding(String) - Method in class org.dataone.mimemultipart.MultipartRequest
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'checksum' element value.
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'checksum' element value.
setCN(String) - Static method in class org.dataone.client.v1.itk.D1Client: Use this method to set the environment via the baseUrl to the environment's Coordinating Node.
setCN(String) - Static method in class org.dataone.client.v2.itk.D1Client: Use this method to set the environment via the baseUrl to the environment's Coordinating Node.
setCode(int) - Method in exception org.dataone.service.exceptions.BaseException
setContactSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node: Set the list of 'contactSubject' element items.
setCount(int) - Method in class org.dataone.service.types.v1.MonitorInfo: Set the 'count' element value.
setCount(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'count' attribute value.
setCurrentIdentity(String) - Static method in class org.dataone.client.auth.ClientIdentityManager: uses the value of the property passed to setup the CertificateManager to use the certificate found at that path
setData(byte[]) - Method in class org.dataone.client.v1.itk.D1Object: Deprecated.
setData(byte[]) - Method in class org.dataone.client.v2.itk.D1Object: Deprecated.
setDataSource(DataSource) - Method in class org.dataone.client.v1.itk.D1Object: set the DataSource representation of the data
setDataSource(DataSource) - Method in class org.dataone.client.v2.itk.D1Object: set the DataSource representation of the data
setDate(Date) - Method in class org.dataone.service.types.v1.MonitorInfo: Set the 'date' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'dateLogged' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'dateLogged' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'dateSysMetadataModified' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'dateSysMetadataModified' element value.
setDateUploaded(Date) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'dateUploaded' element value.
setDefaultTimeout(Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient: Sets the default timeout parameter: "D1Client.http.default.timeouts.ms" to the given Integer.
setDescription(String) - Method in class org.dataone.service.types.v1.Node: Set the 'description' element value.
setDescription(String) - Method in class org.dataone.service.types.v2.OptionList: Set the 'description' attribute value.
setDescriptionList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryField: Set the list of 'description' element items.
setDetail_code(String) - Method in exception org.dataone.service.exceptions.BaseException
setEmailList(List<String>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'email' element items.
setEntryId(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'entryId' element value.
setEntryId(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'entryId' element value.
setEquivalentIdentityList(List<Subject>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'equivalentIdentity' element items.
setEvent(Event) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'event' element value.
setEvent(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'event' element value.
setExtension(String) - Method in class org.dataone.service.types.v2.ObjectFormat: Set the 'extension' element value.
setFamilyName(String) - Method in class org.dataone.service.types.v1.Person: Set the 'familyName' element value.
setFileName(String) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'fileName' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'formatId' element value.
setFormatName(String) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatName' element value.
setFormatType(String) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatType' element value.
setGivenNameList(List<String>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'givenName' element items.
setGroupList(List<Group>) - Method in class org.dataone.service.types.v1.SubjectInfo: Set the list of 'group' element items.
setGroupName(String) - Method in class org.dataone.service.types.v1.Group: Set the 'groupName' element value.
setHasMemberList(List<Subject>) - Method in class org.dataone.service.types.v1.Group: Set the list of 'hasMember' element items.
setHeader(String, String) - Method in class org.dataone.client.rest.HttpMultipartRestClient: Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638 build time, as shown in https://redmine.dataone.org/issues/7638
setHeader(String, String) - Method in class org.dataone.client.rest.RestClient: Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
setHour(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'hour' attribute value.
setHttpClient(Object) - Method in class org.dataone.client.auth.AuthTokenSession
setHttpClient(Object) - Method in class org.dataone.client.auth.X509Session
setHttpClient(HttpClient) - Method in class org.dataone.client.rest.RestClient: Sets the HttpClient instance used for the connection.
setIdentifier(String) - Method in exception org.dataone.service.exceptions.BaseException
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'identifier' element value.
setIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.Node: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectLocationList: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'identifier' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'ipAddress' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'ipAddress' element value.
setIsMemberOfList(List<Subject>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'isMemberOf' element items.
setKey(String) - Method in class org.dataone.service.types.v2.OptionList: Set the 'key' attribute value.
setKey(String) - Method in class org.dataone.service.types.v2.Property: Set the 'key' attribute value.
setLastCompleteHarvest(Date) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'lastCompleteHarvest' element value.
setLastHarvested(Date) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'lastHarvested' element value.
setLastSuccess(Date) - Method in class org.dataone.service.types.v1.Ping: Set the 'lastSuccess' attribute value.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v1.Log: Set the list of 'logEntry' element items.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v2.Log: Set the list of 'logEntry' element items.
setMaxObjectSize(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the 'maxObjectSize' element value.
setMday(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'mday' attribute value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFormat: Set the 'mediaType' element value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'mediaType' element value.
setMethodName(String) - Method in class org.dataone.service.types.v1.ServiceMethodRestriction: Set the 'methodName' attribute value.
setMin(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'min' attribute value.
setMon(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'mon' attribute value.
setMonitorInfoList(List<MonitorInfo>) - Method in class org.dataone.service.types.v1.MonitorList: Set the list of 'monitorInfo' element items.
setMultipartRestClient(MultipartRestClient) - Method in class org.dataone.client.auth.AuthTokenSession
setMultipartRestClient(MultipartRestClient) - Method in class org.dataone.client.auth.X509Session
setMultivalued(Boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'multivalued' element value.
setName(String) - Method in class org.dataone.service.types.v1.Node: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1.Service: Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v2.MediaType: Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty: Set the 'name' attribute value.
setNodeBaseServiceUrl(String) - Method in class org.dataone.client.rest.MultipartD1Node: Set the service URL for this node.
setNodeId(NodeReference) - Method in interface org.dataone.client.D1Node: Set the NodeId associated with the D1Node
setNodeId(NodeReference) - Method in class org.dataone.client.rest.MultipartD1Node
setNodeId(String) - Method in exception org.dataone.service.exceptions.BaseException: Set the node Id string
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'nodeIdentifier' element value.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v1.NodeList: Set the list of 'node' element items.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v2.NodeList: Set the list of 'node' element items.
setNodeLocator(NodeLocator) - Static method in class org.dataone.client.v1.itk.D1Client: For testing, we can override the nodeLocator
setNodeLocator(NodeLocator) - Static method in class org.dataone.client.v2.itk.D1Client: For testing, we can override the nodeLocator
setNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.Node: Set the 'nodeReplicationPolicy' element value.
setNodeType(NodeType) - Method in interface org.dataone.client.D1Node: Set the Nodetype for the D1Node
setNodeType(NodeType) - Method in class org.dataone.client.rest.MultipartD1Node
setNumberReplicas(Integer) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the 'numberReplicas' attribute value.
setObjectFormat(ObjectFormat) - Method in class org.dataone.eml.EMLDocument: set the format of the document
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v1.ObjectFormatList: Set the list of 'objectFormat' element items.
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v2.ObjectFormatList: Set the list of 'objectFormat' element items.
setObjectInfoList(List<ObjectInfo>) - Method in class org.dataone.service.types.v1.ObjectList: Set the list of 'objectInfo' element items.
setObjectLocationList(List<ObjectLocation>) - Method in class org.dataone.service.types.v1.ObjectLocationList: Set the list of 'objectLocation' element items.
setObsoletedBy(Identifier, Identifier, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setObsoletedBy(Session, Identifier, Identifier, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setObsoletedBy(Session, Identifier, Identifier, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
setObsoletedBy(Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v2.CNCore: Deprecated.
the Authoritative Member Node is responsible for obsoleting content using SystemMetadata modifications
setObsoletedBy(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'obsoletedBy' element value.
setObsoletes(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'obsoletes' element value.
setOptionList(List<String>) - Method in class org.dataone.service.types.v2.OptionList: Set the list of 'option' element items.
setOriginMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'originMemberNode' element value.
setPackageId(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
setPackageId(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
setPermissionList(List<Permission>) - Method in class org.dataone.service.types.v1.AccessRule: Set the list of 'permission' element items.
setPersonList(List<Person>) - Method in class org.dataone.service.types.v1.SubjectInfo: Set the list of 'person' element items.
setPid(String) - Method in exception org.dataone.service.exceptions.BaseException: Deprecated.
As of release 2.4, replaced by #setIdentifier()
setPing(Ping) - Method in class org.dataone.service.types.v1.Node: Set the 'ping' element value.
setPreference(Integer) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'preference' element value.
setPreferredMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the list of 'preferredMemberNode' element items.
setPropertyList(List<MediaTypeProperty>) - Method in class org.dataone.service.types.v2.MediaType: Set the list of 'property' element items.
setPropertyList(List<Property>) - Method in class org.dataone.service.types.v2.Node: Set the list of 'property' element items.
setPublicAccess() - Method in class org.dataone.client.types.AccessPolicyEditor
setPublicAccess(Session) - Method in class org.dataone.client.v1.itk.D1Object: Change the object to publicly readable
setPublicAccess(Session) - Method in class org.dataone.client.v2.itk.D1Object: Change the object to publicly readable
setQueryEngineList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Set the list of 'queryEngine' element items.
setQueryEngineVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'queryEngineVersion' element value.
setQueryFieldList(List<QueryField>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the list of 'queryField' element items.
setQuerySchemaVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'querySchemaVersion' element value.
setReplicaList(List<Replica>) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the list of 'replica' element items.
setReplicaMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicaMemberNode' element value.
setReplicate(boolean) - Method in class org.dataone.service.types.v1.Node: Set the 'replicate' attribute value.
setReplicationAllowed(Boolean) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the 'replicationAllowed' attribute value.
setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v2.CNReplication: Deprecated.
use CNCore.updateSystemMetadata()
setReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'replicationPolicy' element value.
setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v1.impl.MultipartCNode
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v1.impl.MultipartCNode
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v2.impl.MultipartCNode
setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v2.CNReplication
setReplicationStatus(ReplicationStatus) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicationStatus' element value.
setReplicaVerified(Date) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicaVerified' element value.
setResource(String) - Method in class org.dataone.service.util.D1Url
setResourceMap(ResourceMap) - Method in class org.dataone.client.v1.itk.DataPackage: Set the internally stored resource map
setResourceMap(ResourceMap) - Method in class org.dataone.client.v2.itk.DataPackage: Set the internally stored resource map
setRestrictionList(List<ServiceMethodRestriction>) - Method in class org.dataone.service.types.v1.Service: Set the list of 'restriction' element items.
setReturnable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'returnable' element value.
setRightsHolder(Identifier, Subject, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setRightsHolder(Session, Identifier, Subject, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
setRightsHolder(Session, Identifier, Subject, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
setRightsHolder(Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization: Deprecated.
use CNCore.updateSystemMetadata()
setRightsHolder(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'rightsHolder' element value.
setRightsHolderList(List<Subject>) - Method in class org.dataone.service.types.v1.Group: Set the list of 'rightsHolder' element items.
setSchedule(Schedule) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'schedule' element value.
setSearchable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'searchable' element value.
setSec(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'sec' attribute value.
setSerialVersion(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'serialVersion' element value.
setSeriesId(Identifier) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'seriesId' element value.
setServiceList(List<Service>) - Method in class org.dataone.service.types.v1.Services: Set the list of 'service' element items.
setServices(Services) - Method in class org.dataone.service.types.v1.Node: Set the 'services' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'size' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'size' element value.
setSortable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'sortable' element value.
setSpaceAllocated(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the 'spaceAllocated' element value.
setStart(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'start' attribute value.
setState(NodeState) - Method in class org.dataone.service.types.v1.Node: Set the 'state' attribute value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Group: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Person: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Session: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'subject' element value.
setSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.Session: Set the 'subjectInfo' element value.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.AccessRule: Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node: Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.SubjectList: Set the list of 'subject' element items.
setSubmitter(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'submitter' element value.
setSuccess(Boolean) - Method in class org.dataone.service.types.v1.Ping: Set the 'success' attribute value.
setSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.Node: Set the 'synchronization' element value.
setSynchronize(boolean) - Method in class org.dataone.service.types.v1.Node: Set the 'synchronize' attribute value.
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v1.itk.D1Object
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v1.itk.DataPackage: Set the SystemMetadata object to this data package.
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v2.itk.D1Object
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v2.itk.DataPackage: Set the SystemMetadata object to this data package.
Settings - Class in org.dataone.configuration
SettingsContextNodeLocator - Class in org.dataone.client.v1.impl: This implementation of NodeLocator uses property defined in the configuration to determine the NodeList to use for the mapping NodeReferences to baseUrls.
SettingsContextNodeLocator() - Constructor for class org.dataone.client.v1.impl.SettingsContextNodeLocator: Creates a NodeLocator using DefaultHttpMultipartRestClient.
SettingsContextNodeLocator(MultipartRestClient) - Constructor for class org.dataone.client.v1.impl.SettingsContextNodeLocator
SettingsContextNodeLocator - Class in org.dataone.client.v2.impl: This implementation of NodeLocator uses property defined in the configuration to determine the NodeList to use for the mapping NodeReferences to baseUrls.
SettingsContextNodeLocator() - Constructor for class org.dataone.client.v2.impl.SettingsContextNodeLocator: Creates a NodeLocator using DefaultHttpMultipartRestClient.
SettingsContextNodeLocator(MultipartRestClient) - Constructor for class org.dataone.client.v2.impl.SettingsContextNodeLocator
setTotal(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'total' attribute value.
setType(NodeType) - Method in class org.dataone.service.types.v1.Node: Set the 'type' attribute value.
setType(String) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'type' element value.
setType(String) - Method in class org.dataone.service.types.v2.Property: Set the 'type' attribute value.
setupSSL_v4_1(AbstractHttpClient, X509Session) - Static method in class org.dataone.client.utils.HttpUtils: Provided to assist with backwards compatibility with v4.1.x era DefaultHttpClient (now deprecated).
setUrl(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'url' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'userAgent' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'userAgent' element value.
setValue(String) - Method in class org.dataone.service.types.v1.Checksum: Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v1.Identifier: Set the 'Identifier' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.NodeReference: Set the 'NodeReference' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Set the 'ObjectFormatIdentifier' simpleType value.
setValue(String) - Method in class org.dataone.service.types.v1.Subject: Set the 'Subject' complexType value.
setValue(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty: Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v2.Property: Set the extension value.
setVerified(Boolean) - Method in class org.dataone.service.types.v1.Person: Set the 'verified' element value.
setVersion(String) - Method in class org.dataone.service.types.v1.Service: Set the 'version' attribute value.
setVersionList(List<String>) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the list of 'version' element items.
setWday(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'wday' attribute value.
setYear(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'year' attribute value.
sharesAuthorInstitutionWith - Static variable in class org.dataone.vocabulary.CITO_263
sharesAuthorsWith - Static variable in class org.dataone.vocabulary.CITO_263
sharesFundingAgencyWith - Static variable in class org.dataone.vocabulary.CITO_263
shutdownConnectionManagers() - Method in class org.dataone.client.utils.HttpConnectionMonitorService
SimpleHttpGetClient - Class in org.dataone.client.v1.examples: A class to do a straightforward HTTP GET request and stream the response to stdout.
SimpleHttpGetClient() - Constructor for class org.dataone.client.v1.examples.SimpleHttpGetClient
SimpleMultipartEntity - Class in org.dataone.mimemultipart
SimpleMultipartEntity() - Constructor for class org.dataone.mimemultipart.SimpleMultipartEntity
size() - Method in class org.dataone.client.types.ObsoletesChain: returns the size of the chain (count of the number of items)
size() - Method in class org.dataone.client.v1.itk.DataPackage: Used to introspect on the local temporary data store, NOT the number of DataPackage members.
size() - Method in class org.dataone.client.v2.itk.DataPackage: Used to introspect on the local temporary data store, NOT the number of DataPackage members.
size - Variable in class org.dataone.service.types.v1.ObjectInfo
size - Variable in class org.dataone.service.types.v1.SystemMetadata
sizeAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the number of 'additionalInfo' element items.
sizeAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get the number of 'algorithm' element items.
sizeAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the number of 'allowedNode' element items.
sizeAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the number of 'allowedObjectFormat' element items.
sizeAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Get the number of 'allow' element items.
sizeBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the number of 'blockedMemberNode' element items.
sizeContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the number of 'contactSubject' element items.
sizeDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Get the number of 'description' element items.
sizeEmailList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'email' element items.
sizeEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'equivalentIdentity' element items.
sizeGivenNameList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'givenName' element items.
sizeGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the number of 'group' element items.
sizeHasMemberList() - Method in class org.dataone.service.types.v1.Group: Get the number of 'hasMember' element items.
sizeIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'isMemberOf' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v1.Log: Get the number of 'logEntry' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v2.Log: Get the number of 'logEntry' element items.
sizeMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Get the number of 'monitorInfo' element items.
sizeNodeList() - Method in class org.dataone.service.types.v1.NodeList: Get the number of 'node' element items.
sizeNodeList() - Method in class org.dataone.service.types.v2.NodeList: Get the number of 'node' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the number of 'objectFormat' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the number of 'objectFormat' element items.
sizeObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Get the number of 'objectInfo' element items.
sizeObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the number of 'objectLocation' element items.
sizeOptionList() - Method in class org.dataone.service.types.v2.OptionList: Get the number of 'option' element items.
SizeOrDuration - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
sizePermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Get the number of 'permission' element items.
sizePersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the number of 'person' element items.
sizePreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the number of 'preferredMemberNode' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.MediaType: Get the number of 'property' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.Node: Get the number of 'property' element items.
sizeQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get the number of 'queryEngine' element items.
sizeQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the number of 'queryField' element items.
sizeReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the number of 'replica' element items.
sizeRestrictionList() - Method in class org.dataone.service.types.v1.Service: Get the number of 'restriction' element items.
sizeRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Get the number of 'rightsHolder' element items.
sizeServiceList() - Method in class org.dataone.service.types.v1.Services: Get the number of 'service' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Get the number of 'subject' element items.
sizeVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the number of 'version' element items.
Slice - Class in org.dataone.service.types.v1: An abstract type used as a common base for other types that need to include *count*, *start*, and *total* attributes to indicate which slice of a list is represented by a set of records.The first element in a list is always index 0, i.e.
Slice() - Constructor for class org.dataone.service.types.v1.Slice
sortable - Variable in class org.dataone.service.types.v1_1.QueryField
source - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
spaceAllocated - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
spatial - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
speculatesOn - Static variable in class org.dataone.vocabulary.CITO_263
Standard - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
standardizeDN(String) - Method in class org.dataone.client.auth.CertificateManager: Returns D1-wide consistent Subject DN string representations
start - Variable in class org.dataone.service.types.v1.Slice
startAsync() - Method in class org.dataone.mimemultipart.MultipartRequest
startAsync(ServletRequest, ServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
state - Variable in class org.dataone.service.types.v1.Node
STD_CONFIG_PATH - Static variable in class org.dataone.configuration.Settings
subject - Variable in class org.dataone.service.types.v1.AccessRule
subject - Variable in class org.dataone.service.types.v1.Group
subject - Variable in class org.dataone.service.types.v1.LogEntry
subject - Variable in class org.dataone.service.types.v1.Node
subject - Variable in class org.dataone.service.types.v1.Person
subject - Variable in class org.dataone.service.types.v1.Session
Subject - Class in org.dataone.service.types.v1: An identifier for a Person (user), Group, Organization, or System.The :term:`Subject` is a string that provides a formal name to identify a user or group in the DataONE Identity Management Service.
Subject() - Constructor for class org.dataone.service.types.v1.Subject
subject - Variable in class org.dataone.service.types.v2.LogEntry
subject - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
SUBJECT_AUTHENTICATED_USER - Static variable in class org.dataone.service.util.Constants
SUBJECT_PUBLIC - Static variable in class org.dataone.service.util.Constants
SUBJECT_VERIFIED_USER - Static variable in class org.dataone.service.util.Constants
subjectInfo - Variable in class org.dataone.service.types.v1.Session
SubjectInfo - Class in org.dataone.service.types.v1: A list of :term:`Subjects`, including both :class:`Types.Person` and :class:`Types.Group` entries returned from the :func:`CNIdentity.getSubjectInfo` service and :func:`CNIdentity.listSubjects` services.
SubjectInfo() - Constructor for class org.dataone.service.types.v1.SubjectInfo
SubjectList - Class in org.dataone.service.types.v1: A list of :term:`Subjects` used for identity/group management Schema fragment(s) for this class:
SubjectList() - Constructor for class org.dataone.service.types.v1.SubjectList
submitter - Variable in class org.dataone.service.types.v1.SystemMetadata
success - Variable in class org.dataone.service.types.v1.Ping
supportedFormatIdentifiers - Static variable in class org.dataone.eml.DataoneEMLParser
supportedNamespaceSummary - Static variable in class org.dataone.eml.DataoneEMLParser
supports - Static variable in class org.dataone.vocabulary.CITO_263
synchronization - Variable in class org.dataone.service.types.v1.Node
Synchronization - Class in org.dataone.service.types.v1: Configuration information for the process by which metadata is harvested from Member Nodes to Coordinating Nodes, including the schedule on which harvesting should occur, and information about the last :term:`synchronization` attempts for the node.
Synchronization() - Constructor for class org.dataone.service.types.v1.Synchronization
synchronizationFailed(SynchronizationFailed) - Method in class org.dataone.client.v1.impl.MultipartMNode
synchronizationFailed(Session, SynchronizationFailed) - Method in class org.dataone.client.v1.impl.MultipartMNode
synchronizationFailed(Session, SynchronizationFailed) - Method in class org.dataone.client.v2.impl.MultipartMNode
SynchronizationFailed - Exception in org.dataone.service.exceptions: The DataONE SynchronizationFailed exception, used as a callback message to a Member Node from a Coordinating Node when an attempt to synchronize some object fails.
SynchronizationFailed(String, String) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
synchronizationFailed(SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
synchronize(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
synchronize(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
synchronize - Variable in class org.dataone.service.types.v1.Node
SystemMetadata - Class in org.dataone.service.types.v1: System metadata (often referred to as :term:`sysmeta`) is the information used by DataONE to track and manage objects across the distributed Coordinating and Member Nodes of the network.
SystemMetadata() - Constructor for class org.dataone.service.types.v1.SystemMetadata
SystemMetadata - Class in org.dataone.service.types.v2: System metadata in DataONE APIs version 2.0 extends the :class:`types.SystemMetadata` definition of version 1.x by adding :term:`seriesId`, :term:`mediaType`, and :term:`fileName` elements.
SystemMetadata() - Constructor for class org.dataone.service.types.v2.SystemMetadata
systemMetadataChanged(Session, Identifier, long, Date) - Method in class org.dataone.client.rest.MultipartD1Node
systemMetadataChanged(Identifier, long, Date) - Method in class org.dataone.client.v1.impl.MultipartMNode
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
systemMetadataChanged(Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization: Deprecated.
SystemMetadataDateModifiedComparator - Class in org.dataone.service.types.v1.comparators: A Comparator that compares two SystemMetadata objects base on the DateSystemMetadataModified property (Date) Note: this comparator imposes orderings that are inconsistent with equals.
SystemMetadataDateModifiedComparator() - Constructor for class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator
SystemMetadataDateUploadedComparator - Class in org.dataone.service.types.v1.comparators: A Comparator that compares two SystemMetadata objects based on the DateUploaded property (Date) Note: this comparator imposes orderings that are inconsistent with equals.
SystemMetadataDateUploadedComparator() - Constructor for class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator

T

tableOfContents - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
TEMP_DIR - Static variable in class org.dataone.service.util.Constants: Deprecated.
this is OS-specific and should not be used
temporal - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
throttleIntervalSec - Static variable in class org.dataone.client.v2.formats.ObjectFormatCache
title - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
toString() - Method in class org.dataone.service.util.D1Url
total - Variable in class org.dataone.service.types.v1.Slice
trimAndValidateString(String) - Static method in class org.dataone.service.util.D1Url
type - Variable in class org.dataone.service.types.v1.Node
type - Variable in class org.dataone.service.types.v1_1.QueryField
type - Variable in class org.dataone.service.types.v2.Property
type - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
TypeCompareUtil - Class in org.dataone.service.types.v1.util: This utility class provides an efficient way to test bean-style data objects (of the same type) for differences in property values.
TypeCompareUtil() - Constructor for class org.dataone.service.types.v1.util.TypeCompareUtil
TypeFactory - Class in org.dataone.service.types.v1: A Factory class for building, cloning, and converting common DataONE types.
TypeFactory() - Constructor for class org.dataone.service.types.v1.TypeFactory
TypeFactory - Class in org.dataone.service.types.v2
TypeFactory() - Constructor for class org.dataone.service.types.v2.TypeFactory
TypeMarshaller - Class in org.dataone.service.util: The standard class used to marshal and unmarshal datatypes to and from input and output streams and file structures.
TypeMarshaller() - Constructor for class org.dataone.service.util.TypeMarshaller

U

unmarshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
unmarshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter
unmarshal(String) - Method in class org.dataone.service.util.DateMarshallingAdapter
unmarshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
unmarshalTypeFromFile(Class<T>, File) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshals the contents of the filenamePath into the specified domainClass.
unmarshalTypeFromFile(Class<T>, String) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshalls the contents of file parameter to the specified domainClass
unmarshalTypeFromStream(Class<T>, InputStream) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshals the inputStream to the specified domainClass and unequivocally closes the passed in InputStream .
UnsupportedMetadataType - Exception in org.dataone.service.exceptions: The DataONE UnsupportedMetadataType exception, raised when the science metadata document submitted is not of a type that is recognized by the DataONE system.
UnsupportedMetadataType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedType - Exception in org.dataone.service.exceptions: The DataONE UnsupportedType exception, raised when the information presented appears to be unsupported.
UnsupportedType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
update(Observable, Object) - Method in class org.dataone.client.rest.DefaultHttpMultipartRestClient: Updates the RestClient with new Session and certificate information from the CertificateManager.
update(Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
update(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client: Perform an update an object in DataONE with the given D1Object on the originMemberNode contained in its systemMetadata.
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
update(Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
updateAccount(Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateAccount(Session, Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateAccount(Session, Person) - Method in class org.dataone.client.v2.impl.MultipartCNode
updateAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
updateGroup(Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateGroup(Session, Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateGroup(Session, Group) - Method in class org.dataone.client.v2.impl.MultipartCNode
updateGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
updateNodeCapabilities(NodeReference, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateNodeCapabilities(Session, NodeReference, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateNodeCapabilities(Session, NodeReference, Node) - Method in class org.dataone.client.v2.impl.MultipartCNode
updateNodeCapabilities(NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister: Deprecated.
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
updateReplicationMetadata(Identifier, Replica, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
updateReplicationMetadata(Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v2.CNReplication
updates - Static variable in class org.dataone.vocabulary.CITO_263
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartD1Node
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
uploadDataPackages(MNode, File) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload: Uploads data packages in rootDir to targetMN.
uploadDataPackageWithRetry(MNode, File, int) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload: Uploads data package in tmpDir to targetMN.
url - Variable in class org.dataone.eml.EMLDocument.DistributionMetadata
url - Variable in class org.dataone.service.types.v1.ObjectLocation
Usage - Static variable in class org.dataone.vocabulary.PROV
USE_CACHING_CLIENT - Static variable in class org.dataone.client.utils.HttpUtils
USE_SCHEMA_VALIDATION - Static variable in class org.dataone.service.util.TypeMarshaller
used - Static variable in class org.dataone.vocabulary.PROV
User - Static variable in class org.dataone.vocabulary.ProvONE_V1
userAgent - Variable in class org.dataone.service.types.v1.LogEntry
userAgent - Variable in class org.dataone.service.types.v2.LogEntry
usesConclusionsFrom - Static variable in class org.dataone.vocabulary.CITO_263
usesDataFrom - Static variable in class org.dataone.vocabulary.CITO_263
usesMethodIn - Static variable in class org.dataone.vocabulary.CITO_263
usingFallbackFormatList - Static variable in class org.dataone.client.v2.formats.ObjectFormatCache

V

valid - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
validateAgainstSchema(Object) - Static method in class org.dataone.service.util.TypeMarshaller: A method to validate DataONE types against the schemas registered with the TypeMarshaller.
validateRequest(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Static method in class org.dataone.client.v1.itk.D1Object: Check the given set of input arguments that they are all valid and not null, and that string values are not null and of non-zero length.
validateRequest(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Static method in class org.dataone.client.v2.itk.D1Object: Check the given set of input arguments that they are all valid and not null, and that string values are not null and of non-zero length.
validateResourceMap(ResourceMap) - Method in class org.dataone.ore.ResourceMapFactory: Validate the ResourceMap against DataONE constraints (use of CN_Read.resolve, identifier triple defined, identifier matching URI, aggregation resource using {resourceMapID}#aggregation)
value - Variable in class org.dataone.service.types.v1.Checksum
value - Variable in class org.dataone.service.types.v1.Identifier
value - Variable in class org.dataone.service.types.v1.NodeReference
value - Variable in class org.dataone.service.types.v1.ObjectFormatIdentifier
value - Variable in class org.dataone.service.types.v1.Subject
value - Variable in class org.dataone.service.types.v2.MediaTypeProperty
value - Variable in class org.dataone.service.types.v2.Property
valueOf(String) - Static method in enum org.dataone.service.types.v1.Event: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeState: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.Permission: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.dataone.service.types.v1.Event: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeState: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.Permission: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.ReplicationStatus: Returns an array containing the constants of this enum type, in the order they are declared.
verified - Variable in class org.dataone.service.types.v1.Person
verify(X509Certificate, X509Certificate) - Static method in class org.dataone.client.auth.CertificateManager
verify(X509Certificate, X509Certificate, boolean) - Static method in class org.dataone.client.auth.CertificateManager: Check the validity of a certificate, and be sure that it is verifiable using the given CA certificate.
verifyAccount(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
verifyAccount(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
verifyAccount(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
verifyAccount(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
version - Variable in class org.dataone.service.types.v1.ObjectLocation
version - Variable in class org.dataone.service.types.v1.Service
VersionMismatch - Exception in org.dataone.service.exceptions: The DataONE VersionMismatch exception, raised when the serialVersion supplied with the request does not match the serialVersion of the target
VersionMismatch(String, String) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
view(Session, String, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
view(Session, String, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
view(Session, String, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
view(Session, String, Identifier) - Method in interface org.dataone.service.cn.v2.CNView
view(Session, String, Identifier) - Method in interface org.dataone.service.mn.v2.MNView
Visualization - Static variable in class org.dataone.vocabulary.ProvONE_V1

W

wasAssociatedWith - Static variable in class org.dataone.vocabulary.PROV
wasDerivedFrom - Static variable in class org.dataone.vocabulary.PROV
wasGeneratedBy - Static variable in class org.dataone.vocabulary.PROV
wasInformedBy - Static variable in class org.dataone.vocabulary.PROV
wasPartOf - Static variable in class org.dataone.vocabulary.ProvONE_V1
wday - Variable in class org.dataone.service.types.v1.Schedule
Workflow - Static variable in class org.dataone.vocabulary.ProvONE_V1

X

X509Session - Class in org.dataone.client.auth: A subclass of Session to hide the complexities of certificate and connection management from users.
x509Session - Variable in class org.dataone.client.rest.HttpMultipartRestClient
xmlValue() - Method in enum org.dataone.service.types.v1.Event
xmlValue() - Method in enum org.dataone.service.types.v1.NodeState
xmlValue() - Method in enum org.dataone.service.types.v1.NodeType
xmlValue() - Method in enum org.dataone.service.types.v1.Permission
xmlValue() - Method in enum org.dataone.service.types.v1.ReplicationStatus

Y

year - Variable in class org.dataone.service.types.v1.Schedule

A B C D E F G H I J K L M N O P Q R S T U V W X Y