Index (DataONE_Common_Java 2.4.0-SNAPSHOT API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y

A

AccessPolicy - Class in org.dataone.service.types.v1: A set of rules that specifies as a whole the allowable permissions that a given user, group, or system has for accessing a resource, including data, metadata, resource map, and service resources.
AccessPolicy() - Constructor for class org.dataone.service.types.v1.AccessPolicy
accessPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
AccessPolicyMarshallingAdapter - Class in org.dataone.service.util
AccessPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessPolicyMarshallingAdapter
AccessRule - Class in org.dataone.service.types.v1: A rule that is used to allow a :term:`subject` to perform an action (such as read or write) on an object in DataONE.
AccessRule() - Constructor for class org.dataone.service.types.v1.AccessRule
AccessRuleMarshallingAdapter - Class in org.dataone.service.util
AccessRuleMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessRuleMarshallingAdapter
AccessUtil - Class in org.dataone.service.types.v1.util: A helper class to simplify the use of AccessRules and AccessPolicies consisting of static factory methods for creating these nested objects (accessPolicy has accessRules has Permissions and Subjects, each subject has a value)
AccessUtil() - Constructor for class org.dataone.service.types.v1.util.AccessUtil
addAdditionalInfo(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Add a 'additionalInfo' element item.
addAlgorithm(String) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Add a 'algorithm' element item.
addAllow(AccessRule) - Method in class org.dataone.service.types.v1.AccessPolicy: Add a 'allow' element item.
addAllowedNode(NodeReference) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Add a 'allowedNode' element item.
addAllowedObjectFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Add a 'allowedObjectFormat' element item.
addBlockedMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Add a 'blockedMemberNode' element item.
addContactSubject(Subject) - Method in class org.dataone.service.types.v1.Node: Add a 'contactSubject' element item.
addDateParamPair(String, Date) - Method in class org.dataone.service.util.D1Url: convenience method for adding date object to query parameters.
addDescription(String) - Method in class org.dataone.service.types.v1_1.QueryField: Add a 'description' element item.
addEmail(String) - Method in class org.dataone.service.types.v1.Person: Add a 'email' element item.
addEquivalentIdentity(Subject) - Method in class org.dataone.service.types.v1.Person: Add a 'equivalentIdentity' element item.
addFilePart(String, File) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a file part to the MMP
addFilePart(String, InputStream) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a file part to the MMP, using InputStream This method writes the contents of the stream to a temp file and sends it.
addFilePart(String, Object) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: The DataONE object (serializable datatype) passed in is serialized as the specified type to file.
addFilePart(String, Object, Class) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: Deprecated.
addFilePart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: This method generates a temp files for sending, containing the value parameter.
addFormat(Session, ObjectFormatIdentifier, ObjectFormat) - Method in interface org.dataone.service.cn.v2.CNCore
addGivenName(String) - Method in class org.dataone.service.types.v1.Person: Add a 'givenName' element item.
addGroup(Group) - Method in class org.dataone.service.types.v1.SubjectInfo: Add a 'group' element item.
addHasMember(Subject) - Method in class org.dataone.service.types.v1.Group: Add a 'hasMember' element item.
addIsMemberOf(Subject) - Method in class org.dataone.service.types.v1.Person: Add a 'isMemberOf' element item.
additionalInfo - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.Log: Add a 'logEntry' element item.
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.Log: Add a 'logEntry' element item.
addMonitorInfo(MonitorInfo) - Method in class org.dataone.service.types.v1.MonitorList: Add a 'monitorInfo' element item.
addNextPathElement(String) - Method in class org.dataone.service.util.D1Url: adds the next path element to the path portion of the URL, encoding unsafe characters.
addNode(Node) - Method in class org.dataone.service.types.v1.NodeList: Add a 'node' element item.
addNode(Node) - Method in class org.dataone.service.types.v2.NodeList: Add a 'node' element item.
addNonEmptyParam(String) - Method in class org.dataone.service.util.D1Url: adds a single parameter to the query portion of the URL (not a key-value pair) encoding unsafe characters.
addNonEmptyParamPair(String, String) - Method in class org.dataone.service.util.D1Url: adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addNonEmptyParamPair(String, Integer) - Method in class org.dataone.service.util.D1Url: adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFormatList: Add a 'objectFormat' element item.
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFormatList: Add a 'objectFormat' element item.
addObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectList: Add a 'objectInfo' element item.
addObjectLocation(ObjectLocation) - Method in class org.dataone.service.types.v1.ObjectLocationList: Add a 'objectLocation' element item.
addOption(String) - Method in class org.dataone.service.types.v2.OptionList: Add a 'option' element item.
addParamPart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: add a param part to the MMP
addPermission(Permission) - Method in class org.dataone.service.types.v1.AccessRule: Add a 'permission' element item.
addPerson(Person) - Method in class org.dataone.service.types.v1.SubjectInfo: Add a 'person' element item.
addPreEncodedNonEmptyQueryParams(String) - Method in class org.dataone.service.util.D1Url: Method for adding query params that bypasses encoding.
addPreferredMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Add a 'preferredMemberNode' element item.
addProperty(MediaTypeProperty) - Method in class org.dataone.service.types.v2.MediaType: Add a 'property' element item.
addProperty(Property) - Method in class org.dataone.service.types.v2.Node: Add a 'property' element item.
addPublicAccess(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil: Given the original policy, return an AccessPolicy containing all of the original rules, plus a new rule allowing public read permission, if not already in place (otherwise returns the original).
addQueryEngine(String) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Add a 'queryEngine' element item.
addQueryField(QueryField) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Add a 'queryField' element item.
addReplica(Replica) - Method in class org.dataone.service.types.v1.SystemMetadata: Add a 'replica' element item.
addRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.Service: Add a 'restriction' element item.
addRightsHolder(Subject) - Method in class org.dataone.service.types.v1.Group: Add a 'rightsHolder' element item.
addService(Service) - Method in class org.dataone.service.types.v1.Services: Add a 'service' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.AccessRule: Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.Node: Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.SubjectList: Add a 'subject' element item.
addTraceDetail(String, String) - Method in exception org.dataone.service.exceptions.BaseException: Add new detailed trace information, storing it the value under a known key.
addVersion(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Add a 'version' element item.
algorithm - Variable in class org.dataone.service.types.v1.Checksum
algorithm - Variable in class org.dataone.service.types.v1.ChecksumAlgorithmList
allow - Variable in class org.dataone.service.types.v1.AccessPolicy
allowedNode - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
allowedObjectFormat - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
archive(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore: Deprecated.
the Authoritative Member Node is responsible for archiving content using SystemMetadata modifications
archive(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage: Deprecated.
use updateSystemMetadata() to mark content as archived
archived - Variable in class org.dataone.service.types.v1.SystemMetadata
areChecksumsEqual(Checksum, Checksum) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: Returns true if and only if checksum1 and checksum2 are equal: Values are equal, algorithms are equal.
assembleUrl() - Method in class org.dataone.service.util.D1Url
augmentConfiguration(String) - Static method in class org.dataone.configuration.Settings: Include additional properties in the global configuration.
authenticate(HttpServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
AuthenticationTimeout - Exception in org.dataone.service.exceptions: The DataONE AuthenticationTimeout exception, raised when authentication operations exceed pre-established limits.
AuthenticationTimeout(String, String) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
AuthenticationTimeout(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
authoritativeMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata
authorizedClientSubjects(Session) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Derived from Metacat implementation Creates a set of subjects represented in the session object, parsing both the subject of the session and the subjectInfo.
AuthUtils - Class in org.dataone.service.types.v1.util
AuthUtils() - Constructor for class org.dataone.service.types.v1.util.AuthUtils
AuthUtils - Class in org.dataone.service.types.v2.util
AuthUtils() - Constructor for class org.dataone.service.types.v2.util.AuthUtils
available - Variable in class org.dataone.service.types.v1.Service

B

BaseException - Exception in org.dataone.service.exceptions: A BaseException is the root of all DataONE service class exception messages.
BaseException(int, String, String) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, and description.
BaseException(int, String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, pid, nodeId, description, and trace_information.
BaseException(int, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, description, and trace_information.
BaseException(int, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException: Construct a BaseException with the given code, detail code, description, and trace_information.
baseURL - Variable in class org.dataone.service.types.v1.Node
baseURL - Variable in class org.dataone.service.types.v1.ObjectLocation
BigIntegerMarshaller - Class in org.dataone.service.util
BigIntegerMarshaller() - Constructor for class org.dataone.service.util.BigIntegerMarshaller
blockedMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
buildAccessPolicy(HashMap<Subject, Set<Permission>>) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessPolicy instance where each contained AccessRule consists of one subject and that subject's permissions.
buildAccessRule(String, Permission) - Static method in class org.dataone.service.types.v1.TypeFactory
buildAccessRule(String, Permission[]) - Static method in class org.dataone.service.types.v1.TypeFactory
buildFormatIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating an ObjectFormatIdentifier.
buildIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating an Identifier.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v1.TypeFactory: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v2.TypeFactory: Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildNodeReference(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating a NodeReference.
buildSubject(String) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for creating a Subject.

C

Checksum - Class in org.dataone.service.types.v1: Represents the value of a computed :term:`checksum` expressed as a hexadecimal formatted version of the message digest.
Checksum() - Constructor for class org.dataone.service.types.v1.Checksum
checksum - Variable in class org.dataone.service.types.v1.ObjectInfo
checksum - Variable in class org.dataone.service.types.v1.SystemMetadata
checksum(InputStream, String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: return a Checksum based on the input of the stream A useful technique when creating systemMetadata is to wrap the the inputStream in an org.apache.commons.io.input.CountingInputStream, to get the length of the content from the stream (after calling this method).
checksum(byte[], String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil: produce a checksum for the given byte array
ChecksumAlgorithmList - Class in org.dataone.service.types.v1: Represents a list of :term:`checksum` algorithms.
ChecksumAlgorithmList() - Constructor for class org.dataone.service.types.v1.ChecksumAlgorithmList
ChecksumUtil - Class in org.dataone.service.types.v1.util
ChecksumUtil() - Constructor for class org.dataone.service.types.v1.util.ChecksumUtil
cleanupTempFiles() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: calling this method attempts to delete the client-side temp files from the system.
clearAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Remove all 'additionalInfo' element items.
clearAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Remove all 'algorithm' element items.
clearAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Remove all 'allowedNode' element items.
clearAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Remove all 'allowedObjectFormat' element items.
clearAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Remove all 'allow' element items.
clearBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Remove all 'blockedMemberNode' element items.
clearContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Remove all 'contactSubject' element items.
clearDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Remove all 'description' element items.
clearEmailList() - Method in class org.dataone.service.types.v1.Person: Remove all 'email' element items.
clearEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Remove all 'equivalentIdentity' element items.
clearGivenNameList() - Method in class org.dataone.service.types.v1.Person: Remove all 'givenName' element items.
clearGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Remove all 'group' element items.
clearHasMemberList() - Method in class org.dataone.service.types.v1.Group: Remove all 'hasMember' element items.
clearIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Remove all 'isMemberOf' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v1.Log: Remove all 'logEntry' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v2.Log: Remove all 'logEntry' element items.
clearMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Remove all 'monitorInfo' element items.
clearNodeList() - Method in class org.dataone.service.types.v1.NodeList: Remove all 'node' element items.
clearNodeList() - Method in class org.dataone.service.types.v2.NodeList: Remove all 'node' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Remove all 'objectFormat' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Remove all 'objectFormat' element items.
clearObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Remove all 'objectInfo' element items.
clearObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Remove all 'objectLocation' element items.
clearOptionList() - Method in class org.dataone.service.types.v2.OptionList: Remove all 'option' element items.
clearPermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Remove all 'permission' element items.
clearPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Remove all 'person' element items.
clearPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Remove all 'preferredMemberNode' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.MediaType: Remove all 'property' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.Node: Remove all 'property' element items.
clearQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Remove all 'queryEngine' element items.
clearQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Remove all 'queryField' element items.
clearReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Remove all 'replica' element items.
clearRestrictionList() - Method in class org.dataone.service.types.v1.Service: Remove all 'restriction' element items.
clearRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Remove all 'rightsHolder' element items.
clearServiceList() - Method in class org.dataone.service.types.v1.Services: Remove all 'service' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.Node: Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Remove all 'subject' element items.
clearVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Remove all 'version' element items.
clone(Object) - Static method in class org.dataone.service.types.v1.TypeFactory: Clone via marshalling and unmarshalling using the TypeMarshaller to ensure a DEEP copy and no shared object references.
cloneAccessPolicy(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
cloneAccessRule(AccessRule) - Static method in class org.dataone.service.types.v1.util.AccessUtil
cloneFormatIdentifier(ObjectFormatIdentifier) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning an ObjectFormatIdentifier from another, such that they do not share any references for mutable properties.
cloneIdentifier(Identifier) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning an Identifier from another, such that they do not share any references for mutable properties.
cloneNodeReference(NodeReference) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning a NodeReference from another, such that they do not share any references for mutable properties.
cloneSubject(Subject) - Static method in class org.dataone.service.types.v1.TypeFactory: Factory method for cloning a Subject from another, such that they do not share any references for mutable properties.
CNAuthorization - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Authorization interface.
CNAuthorization - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Authorization interface.
CNCore - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier1 Core interface.
CNCore - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Core interface.
CNDiagnostic - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Diagnostic interface.
CNIdentity - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Identity interface.
CNIdentity - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Identity interface.
CNRead - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier1 Read interface.
CNRead - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier1 Read interface.
CNRegister - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier2 Registration interface.
CNRegister - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier2 Registration interface.
CNReplication - Interface in org.dataone.service.cn.v1: The DataONE CoordinatingNode Tier4 Replication interface.
CNReplication - Interface in org.dataone.service.cn.v2: The DataONE CoordinatingNode Tier4 Replication interface.
CNView - Interface in org.dataone.service.cn.v2: The DataONE Coordinating Node View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
compareD1ServiceType(Map<String, Object>, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: This method will compare any number of dataone service-type objects of the same type to each other and return a report of every field where there is a difference.
comparePermissions(Permission, Collection<Permission>) - Static method in class org.dataone.service.types.v1.util.AuthUtils: a comparison algorithm for hierarchical permissions (WRITE implies READ, and CHANGE implies WRITE and READ).
compareSystemMetadata(SystemMetadata, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: Reports the properties of a systemMetadata object, one per line in xpath fashion.
compareTo(Object) - Method in class org.dataone.service.types.v1.Identifier: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.NodeReference: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.Subject: Compares order based on the String value of two objects of the same type.
confirmMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
Constants - Class in org.dataone.service.util
Constants() - Constructor for class org.dataone.service.util.Constants
contactSubject - Variable in class org.dataone.service.types.v1.Node
convert(String) - Static method in enum org.dataone.service.types.v1.Event
convert(String) - Static method in enum org.dataone.service.types.v1.NodeState
convert(String) - Static method in enum org.dataone.service.types.v1.NodeType
convert(String) - Static method in enum org.dataone.service.types.v1.Permission
convert(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus
convertTypeFromType(Object, Class<T>) - Static method in class org.dataone.service.types.v2.TypeFactory: Intended for converting DataONE objects to an instance of another version, this method copies and converts based on common properties.
count - Variable in class org.dataone.service.types.v1.Slice
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
createAccessPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of AccessPolicy
createAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<AccessPolicy>}
createAccessRule() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of AccessRule
createAccessRule(AccessRule) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<AccessRule>}
createAccessRule(Subject[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessRule containing the items specified in the parameters.
createAccessRule(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessRule containing the items specified in the parameters.
createChecksum() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Checksum
createChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Checksum>}
createChecksumAlgorithmList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ChecksumAlgorithmList
createChecksumAlgorithmList(ChecksumAlgorithmList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ChecksumAlgorithmList>}
createGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
createGroup() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Group
createGroup(Group) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Group>}
createIdentifier() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Identifier
createIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Identifier>}
createLog() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Log>}
createLog() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Log>}
createLogEntry() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<LogEntry>}
createLogEntry() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<LogEntry>}
createMediaType() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of MediaType
createMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<MediaType>}
createMediaTypeProperty() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of MediaTypeProperty
createNode() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Node>}
createNode() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Node>}
createNodeList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeList>}
createNodeList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<NodeList>}
createNodeReference() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeReference
createNodeReference(NodeReference) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeReference>}
createNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of NodeReplicationPolicy
createNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<NodeReplicationPolicy>}
createObjectFormat() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectFormat>}
createObjectFormat() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<ObjectFormat>}
createObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectFormatList>}
createObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<ObjectFormatList>}
createObjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectInfo
createObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectInfo>}
createObjectList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectList
createObjectList(ObjectList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectList>}
createObjectLocation() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectLocation
createObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ObjectLocationList
createObjectLocationList(ObjectLocationList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ObjectLocationList>}
createOptionList() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of OptionList
createOptionList(OptionList) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<OptionList>}
createPerson() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Person
createPerson(Person) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Person>}
createPing() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Ping
createProperty() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of Property
createProperty(Property) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<Property>}
createQueryEngineDescription() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryEngineDescription
createQueryEngineDescription(QueryEngineDescription) - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of JAXBElement<QueryEngineDescription>}
createQueryEngineList() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryEngineList
createQueryEngineList(QueryEngineList) - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of JAXBElement<QueryEngineList>}
createQueryField() - Method in class org.dataone.service.types.v1_1.ObjectFactory: Create an instance of QueryField
createReadWriteChangePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWriteChangePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWritePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write.
createReadWritePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil: Dead-simple convenience method for creating a standard permission set of Read and Write.
createReplica() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Replica
createReplica(Replica) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Replica>}
createReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ReplicationPolicy
createReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ReplicationPolicy>}
createSchedule() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Schedule
createSchedule(Schedule) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Schedule>}
createService() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Service
createService(Service) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Service>}
createServiceMethodRestriction() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of ServiceMethodRestriction
createServiceMethodRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<ServiceMethodRestriction>}
createServices() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Services
createServices(Services) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Services>}
createSession() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Session
createSession(Session) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Session>}
createSingleRuleAccessPolicy(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates an AccessPolicy with a single AccessRule, and the AccessRule composed of Subjects and Permissions specified in the parameters.
createSlice() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Slice
createSubject() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Subject
createSubject(Subject) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Subject>}
createSubjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SubjectInfo
createSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SubjectInfo>}
createSubjectList() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SubjectList
createSubjectList(SubjectList) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SubjectList>}
createSubjectList(String[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil: creates a java-List of Subject objects from the given String array.
createSynchronization() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of Synchronization
createSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<Synchronization>}
createSystemMetadata() - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v1.ObjectFactory: Create an instance of JAXBElement<SystemMetadata>}
createSystemMetadata() - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v2.ObjectFactory: Create an instance of JAXBElement<SystemMetadata>}

D

D1_SCHEMAS - Static variable in class org.dataone.service.util.TypeMarshaller: The java representation of the DataONE schemas used to validate unmarshalling
D1Url - Class in org.dataone.service.util
D1Url(String, String) - Constructor for class org.dataone.service.util.D1Url
D1Url(String) - Constructor for class org.dataone.service.util.D1Url
D1Url() - Constructor for class org.dataone.service.util.D1Url
dateLogged - Variable in class org.dataone.service.types.v1.LogEntry
dateLogged - Variable in class org.dataone.service.types.v2.LogEntry
DateMarshallingAdapter - Class in org.dataone.service.util
DateMarshallingAdapter() - Constructor for class org.dataone.service.util.DateMarshallingAdapter
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.ObjectInfo
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.SystemMetadata
DateTimeMarshaller - Class in org.dataone.service.util
DateTimeMarshaller() - Constructor for class org.dataone.service.util.DateTimeMarshaller
dateUploaded - Variable in class org.dataone.service.types.v1.SystemMetadata
decodeString(String) - Static method in class org.dataone.service.util.EncodingUtilities: Decode and return the specified pct-encoded String.
decodeXmlDataItems(String) - Static method in class org.dataone.service.util.EncodingUtilities
delete(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
delete(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
DELETE - Static variable in class org.dataone.service.util.Constants: HTTP Verb DELETE
deleteReplicationMetadata(Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v2.CNReplication
denyMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
describe(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
describe(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
DescribeResponse - Class in org.dataone.service.types.v1: The DataONE Type to represent the metadata returned from a 'describe' request.
DescribeResponse(ObjectFormatIdentifier, BigInteger, Date, Checksum, BigInteger) - Constructor for class org.dataone.service.types.v1.DescribeResponse: instantiate a DescribeResponse object
description - Variable in class org.dataone.service.types.v1.Node
description - Variable in class org.dataone.service.types.v1_1.QueryField
description - Variable in class org.dataone.service.types.v2.OptionList
deserializeAndThrowException(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
deserializeAndThrowException(InputStream, String, Integer, String) - Static method in class org.dataone.service.util.ExceptionHandler: Throw the exception that is contained in an HTTP response A response from an HTTP call may be determined to have an error.
deserializeBigInteger(String) - Static method in class org.dataone.service.util.BigIntegerMarshaller: convert a String to a BigInteger The String must be greater or equal to 0
deserializeDateToUTC(String) - Static method in class org.dataone.service.util.DateTimeMarshaller: convert a String to GMT date The STring must either be ISO 8601 compliant or http://www.w3.org/Protocols/rfc2616/rfc2616-sec3.html#sec3.3.1 compliant
deserializeHeadersAndThrowException(int, Header[]) - Static method in class org.dataone.service.util.ExceptionHandler
deserializeServiceType(Class<T>, InputStream) - Static method in class org.dataone.service.util.ExceptionHandler: Wrapper for Marshalling method that recasts exceptions to ServiceFailure;
deserializeXml(InputStream, String) - Static method in class org.dataone.service.util.ExceptionHandler

E

echoCredentials(Session) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
echoIndexedObject(Session, String, SystemMetadata, InputStream) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
echoSystemMetadata(Session, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
email - Variable in class org.dataone.service.types.v1.Person
encodeUrlFragment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode the URL fragment section following RFC 3986.
encodeUrlPathSegment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode a URL path segment as required by the URL specifications ( RFC 3986 and RFC 1738 section 3.3).
encodeUrlQuerySegment(String) - Static method in class org.dataone.service.util.EncodingUtilities: Encode a URL query segment following the item-list / key-value convention: query = "?" q-item *( "&" q-item) q=item = q-segment [ "=" q-segment ]
EncodingUtilities - Class in org.dataone.service.util
EncodingUtilities() - Constructor for class org.dataone.service.util.EncodingUtilities
entryId - Variable in class org.dataone.service.types.v1.LogEntry
entryId - Variable in class org.dataone.service.types.v2.LogEntry
equals(Object) - Method in class org.dataone.service.types.v1.Identifier: 1 value 2 Value 3 String 4 (java.lang.String) 5 Identifier value is a string, override equals of Identifier.
equals(Object) - Method in class org.dataone.service.types.v1.NodeReference: 1 value 2 Value 3 String 4 (java.lang.String) 5 NodeReference value is a string, override equals of NodeReference.
equals(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: 1 value 2 Value 3 String 4 (java.lang.String) 5 ObjectFormatIdentifier value is a string, override equals of ObjectFormatIdentifier.
equals(Object) - Method in class org.dataone.service.types.v1.Subject: Value is a string, override equals of Subject.
equivalentIdentity - Variable in class org.dataone.service.types.v1.Person
Event - Enum in org.dataone.service.types.v1: The controlled list of events that are logged, which will include *create*, *update*, *delete*, *read*, *replicate*, synchronization_failed* and *replication_failed* events.
event - Variable in class org.dataone.service.types.v1.LogEntry
event - Variable in class org.dataone.service.types.v2.LogEntry
ExceptionalInputStream - Class in org.dataone.service.util: This is a special purpose subclass of PushbackInputStream useful for determining whether or not an input stream contains a Dataone type, a Dataone exception, or other.
ExceptionalInputStream(InputStream) - Constructor for class org.dataone.service.util.ExceptionalInputStream
ExceptionHandler - Class in org.dataone.service.util: uniform deserialization of DataONE Exceptions that may be rethrown
ExceptionHandler() - Constructor for class org.dataone.service.util.ExceptionHandler
extension - Variable in class org.dataone.service.types.v2.ObjectFormat

F

familyName - Variable in class org.dataone.service.types.v1.Person
fileName - Variable in class org.dataone.service.types.v2.SystemMetadata
filterErrors(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
filterErrors(HttpResponse, boolean) - Static method in class org.dataone.service.util.ExceptionHandler: This method maps an HttpResponse onto an InputStream by consuming the response headers and throwing an exception when appropriate.
filterErrors(InputStream, boolean, String) - Static method in class org.dataone.service.util.ExceptionHandler
filterErrorsHeader(HttpResponse, String) - Static method in class org.dataone.service.util.ExceptionHandler: will filter serialized errors coming from the HEAD request by deserializing them and putting on the exception thread(?).
findEquivalentSubjects(SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Look for the equivalent authorization subjects for a given subject which can be either a person or a group.
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Returns the first node with identifier of the provided node reference
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Returns the first node with identifier of the provided node reference
findPersonsSubjects(Set<Subject>, SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils: A recursive method to traverse the equivalent-identity relationships and to handle the transitive nature of group membership and verified status.
FMT_HTML - Static variable in exception org.dataone.service.exceptions.BaseException
FMT_JSON - Static variable in exception org.dataone.service.exceptions.BaseException
FMT_XML - Static variable in exception org.dataone.service.exceptions.BaseException
formatId - Variable in class org.dataone.service.types.v1.ObjectFormat
formatId - Variable in class org.dataone.service.types.v1.ObjectInfo
formatId - Variable in class org.dataone.service.types.v1.SystemMetadata
formatName - Variable in class org.dataone.service.types.v1.ObjectFormat
formatType - Variable in class org.dataone.service.types.v1.ObjectFormat

G

generateIdentifier(String, String) - Method in interface org.dataone.service.cn.v1.CNCore
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNCore
generateIdentifier(String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
get(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead: InputStream is the Java native version of D1's OctetStream
get(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead: InputStream is the Java native version of D1's OctetStream
GET - Static variable in class org.dataone.service.util.Constants: HTTP Verb GET
getAccessPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'accessPolicy' element value.
getAdditionalInfo(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get 'additionalInfo' element item by position.
getAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the list of 'additionalInfo' element items.
getAlgorithm() - Method in class org.dataone.service.types.v1.Checksum: Get the 'algorithm' attribute value.
getAlgorithm(int) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get 'algorithm' element item by position.
getAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get the list of 'algorithm' element items.
getAllow(int) - Method in class org.dataone.service.types.v1.AccessPolicy: Get 'allow' element item by position.
getAllowedNode(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get 'allowedNode' element item by position.
getAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the list of 'allowedNode' element items.
getAllowedObjectFormat(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get 'allowedObjectFormat' element item by position.
getAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the list of 'allowedObjectFormat' element items.
getAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Get the list of 'allow' element items.
getArchived() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'archived' element value.
getAssembledQueryString() - Method in class org.dataone.service.util.D1Url
getAsyncContext() - Method in class org.dataone.mimemultipart.MultipartRequest
getAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getAttributeNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getAuthoritativeMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'authoritativeMemberNode' element value.
getAuthType() - Method in class org.dataone.mimemultipart.MultipartRequest
getAvailable() - Method in class org.dataone.service.types.v1.Service: Get the 'available' attribute value.
getBaseURL() - Method in class org.dataone.service.types.v1.Node: Get the 'baseURL' element value.
getBaseURL() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'baseURL' element value.
getBaseUrl() - Method in class org.dataone.service.util.D1Url
getBlockedMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get 'blockedMemberNode' element item by position.
getBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the list of 'blockedMemberNode' element items.
getCapabilities() - Method in interface org.dataone.service.cn.v2.CNCore
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
getCharacterEncoding() - Method in class org.dataone.mimemultipart.MultipartRequest
getChecksum(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
getChecksum(Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getChecksum() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'checksum' element value.
getChecksum() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'checksum' element value.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil: Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil: Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCode() - Method in exception org.dataone.service.exceptions.BaseException
getConfiguration() - Static method in class org.dataone.configuration.Settings: Get a Configuration interface that combines all resources found under all of the org.dataone.configuration/config.xml files from all application packages.
getContactSubject(int) - Method in class org.dataone.service.types.v1.Node: Get 'contactSubject' element item by position.
getContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the list of 'contactSubject' element items.
getContent_Length() - Method in class org.dataone.service.types.v1.DescribeResponse: get the Size of the object in bytes, the value of SystemMetadata.size from SystemMetadata.
getContentLength() - Method in class org.dataone.mimemultipart.MultipartRequest
getContentType() - Method in class org.dataone.mimemultipart.MultipartRequest
getContextPath() - Method in class org.dataone.mimemultipart.MultipartRequest
getCookies() - Method in class org.dataone.mimemultipart.MultipartRequest
getCount() - Method in class org.dataone.service.types.v1.Log: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.MonitorInfo: Get the 'count' element value.
getCount() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.ObjectList: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.Slice: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.Log: Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the 'count' attribute value.
getD1SubtypesListing(Object) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
getDataONE_Checksum() - Method in class org.dataone.service.types.v1.DescribeResponse: get The algorithm (SystemMetadata.algorithm) and Checksum (SystemMetadata.checksum) of the object being examined, drawn from the SystemMetadata.
getDataONE_ObjectFormatIdentifier() - Method in class org.dataone.service.types.v1.DescribeResponse: get The value of the SystemMetadata.objectFormatIdentifier entry available in the SystemMetadata.
getDate() - Method in class org.dataone.service.types.v1.MonitorInfo: Get the 'date' element value.
getDateHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getDateLogged() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'dateLogged' element value.
getDateLogged() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'dateLogged' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'dateSysMetadataModified' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'dateSysMetadataModified' element value.
getDateUploaded() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'dateUploaded' element value.
getDescription() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity: Returns a concise description of the existing file parts, as comma-separated key-value pairs.
getDescription() - Method in exception org.dataone.service.exceptions.BaseException
getDescription() - Method in class org.dataone.service.types.v1.Node: Get the 'description' element value.
getDescription(int) - Method in class org.dataone.service.types.v1_1.QueryField: Get 'description' element item by position.
getDescription() - Method in class org.dataone.service.types.v2.OptionList: Get the 'description' attribute value.
getDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Get the list of 'description' element items.
getDetail_code() - Method in exception org.dataone.service.exceptions.BaseException
getDispatcherType() - Method in class org.dataone.mimemultipart.MultipartRequest
getEmail(int) - Method in class org.dataone.service.types.v1.Person: Get 'email' element item by position.
getEmailList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'email' element items.
getEntryId() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'entryId' element value.
getEntryId() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'entryId' element value.
getEquivalentIdentity(int) - Method in class org.dataone.service.types.v1.Person: Get 'equivalentIdentity' element item by position.
getEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'equivalentIdentity' element items.
getEvent() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'event' element value.
getEvent() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'event' element value.
getExtension() - Method in class org.dataone.service.types.v2.ObjectFormat: Get the 'extension' element value.
getFamilyName() - Method in class org.dataone.service.types.v1.Person: Get the 'familyName' element value.
getFileName() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'fileName' element value.
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v1.CNCore
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v2.CNCore
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Get the object format based on the given identifier.
getFormatId() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'formatId' element value.
getFormatName() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatName' element value.
getFormatType() - Method in class org.dataone.service.types.v1.ObjectFormat: Get the 'formatType' element value.
getGivenName(int) - Method in class org.dataone.service.types.v1.Person: Get 'givenName' element item by position.
getGivenNameList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'givenName' element items.
getGroup(int) - Method in class org.dataone.service.types.v1.SubjectInfo: Get 'group' element item by position.
getGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the list of 'group' element items.
getGroupName() - Method in class org.dataone.service.types.v1.Group: Get the 'groupName' element value.
getHasMember(int) - Method in class org.dataone.service.types.v1.Group: Get 'hasMember' element item by position.
getHasMemberList() - Method in class org.dataone.service.types.v1.Group: Get the list of 'hasMember' element items.
getHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getHeaderNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getHeaders(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getHour() - Method in class org.dataone.service.types.v1.Schedule: Get the 'hour' attribute value.
getIdentifier() - Method in exception org.dataone.service.exceptions.BaseException
getIdentifier() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.Node: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'identifier' element value.
getInputStream() - Method in class org.dataone.mimemultipart.MultipartRequest
getInstance() - Static method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Get the instance of the ObjectFormatServiceImpl that has been instantiated, or instantiate one if it has not been already.
getIntHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getIpAddress() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'ipAddress' element value.
getIpAddress() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'ipAddress' element value.
getIsMemberOf(int) - Method in class org.dataone.service.types.v1.Person: Get 'isMemberOf' element item by position.
getIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Get the list of 'isMemberOf' element items.
getJAXBContext(Class) - Static method in class org.dataone.service.util.TypeMarshaller: A method to manage JAXB data type contexts, as they are expensive to build and destroy.
getKey() - Method in class org.dataone.service.types.v2.OptionList: Get the 'key' attribute value.
getKey() - Method in class org.dataone.service.types.v2.Property: Get the 'key' attribute value.
getLast_Modified() - Method in class org.dataone.service.types.v1.DescribeResponse: get DateTime value that indicates when the system metadata associated with the object was last modified, i.e.
getLastCompleteHarvest() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'lastCompleteHarvest' element value.
getLastHarvested() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'lastHarvested' element value.
getLastSuccess() - Method in class org.dataone.service.types.v1.Ping: Get the 'lastSuccess' attribute value.
getLastTempfile() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
getLocalAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocale() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocales() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocalName() - Method in class org.dataone.mimemultipart.MultipartRequest
getLocalPort() - Method in class org.dataone.mimemultipart.MultipartRequest
getLogEntry(int) - Method in class org.dataone.service.types.v1.Log: Get 'logEntry' element item by position.
getLogEntry(int) - Method in class org.dataone.service.types.v2.Log: Get 'logEntry' element item by position.
getLogEntryList() - Method in class org.dataone.service.types.v1.Log: Get the list of 'logEntry' element items.
getLogEntryList() - Method in class org.dataone.service.types.v2.Log: Get the list of 'logEntry' element items.
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNCore
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore: Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNCore
getMaxObjectSize() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the 'maxObjectSize' element value.
getMday() - Method in class org.dataone.service.types.v1.Schedule: Get the 'mday' attribute value.
getMediaType() - Method in class org.dataone.service.types.v2.ObjectFormat: Get the 'mediaType' element value.
getMediaType() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'mediaType' element value.
getMethod() - Method in class org.dataone.mimemultipart.MultipartRequest
getMethodName() - Method in class org.dataone.service.types.v1.ServiceMethodRestriction: Get the 'methodName' attribute value.
getMin() - Method in class org.dataone.service.types.v1.Schedule: Get the 'min' attribute value.
getMon() - Method in class org.dataone.service.types.v1.Schedule: Get the 'mon' attribute value.
getMonitorInfo(int) - Method in class org.dataone.service.types.v1.MonitorList: Get 'monitorInfo' element item by position.
getMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Get the list of 'monitorInfo' element items.
getMultipartFiles() - Method in class org.dataone.mimemultipart.MultipartRequest: Return the multipart files as Map of field name to MultipartFile instance.
getMultipartParameters() - Method in class org.dataone.mimemultipart.MultipartRequest: Return the multipart parameters as Map of field name to form field String value.
getMultivalued() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'multivalued' element value.
getName() - Method in class org.dataone.service.types.v1.Node: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1.Service: Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v2.MediaType: Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v2.MediaTypeProperty: Get the 'name' attribute value.
getNode(int) - Method in class org.dataone.service.types.v1.NodeList: Get 'node' element item by position.
getNode(int) - Method in class org.dataone.service.types.v2.NodeList: Get 'node' element item by position.
getNodeCapabilities(NodeReference) - Method in interface org.dataone.service.cn.v2.CNRegister
getNodeId() - Method in exception org.dataone.service.exceptions.BaseException: Get the node Id string
getNodeIdentifier() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'nodeIdentifier' element value.
getNodeList() - Method in class org.dataone.service.types.v1.NodeList: Get the list of 'node' element items.
getNodeList() - Method in class org.dataone.service.types.v2.NodeList: Get the list of 'node' element items.
getNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.Node: Get the 'nodeReplicationPolicy' element value.
getNumberReplicas() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the 'numberReplicas' attribute value.
getObjectFormat(int) - Method in class org.dataone.service.types.v1.ObjectFormatList: Get 'objectFormat' element item by position.
getObjectFormat(int) - Method in class org.dataone.service.types.v2.ObjectFormatList: Get 'objectFormat' element item by position.
getObjectFormatFile() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Convenience method to retrieve the default format list as a stream
getObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the list of 'objectFormat' element items.
getObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the list of 'objectFormat' element items.
getObjectFormatMap() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: Return the hash containing the formatId and format mapping
getObjectInfo(int) - Method in class org.dataone.service.types.v1.ObjectList: Get 'objectInfo' element item by position.
getObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Get the list of 'objectInfo' element items.
getObjectLocation(int) - Method in class org.dataone.service.types.v1.ObjectLocationList: Get 'objectLocation' element item by position.
getObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the list of 'objectLocation' element items.
getObsoletedBy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'obsoletedBy' element value.
getObsoletes() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'obsoletes' element value.
getOption(int) - Method in class org.dataone.service.types.v2.OptionList: Get 'option' element item by position.
getOptionList() - Method in class org.dataone.service.types.v2.OptionList: Get the list of 'option' element items.
getOriginMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'originMemberNode' element value.
getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in interface org.dataone.service.mn.v2.MNPackage
getParameter(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterMap() - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterNames() - Method in class org.dataone.mimemultipart.MultipartRequest
getParameterValues(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getPart(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getParts() - Method in class org.dataone.mimemultipart.MultipartRequest
getPathInfo() - Method in class org.dataone.mimemultipart.MultipartRequest
getPathTranslated() - Method in class org.dataone.mimemultipart.MultipartRequest
getPendingMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
getPermission(int) - Method in class org.dataone.service.types.v1.AccessRule: Get 'permission' element item by position.
getPermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Get the list of 'permission' element items.
getPermissionMap(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
getPerson(int) - Method in class org.dataone.service.types.v1.SubjectInfo: Get 'person' element item by position.
getPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the list of 'person' element items.
getPid() - Method in exception org.dataone.service.exceptions.BaseException: Deprecated.
As of release 2.4, replaced by BaseException.getIdentifier()
getPing() - Method in class org.dataone.service.types.v1.Node: Get the 'ping' element value.
getPreference() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'preference' element value.
getPreferredMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get 'preferredMemberNode' element item by position.
getPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the list of 'preferredMemberNode' element items.
getProperty(int) - Method in class org.dataone.service.types.v2.MediaType: Get 'property' element item by position.
getProperty(int) - Method in class org.dataone.service.types.v2.Node: Get 'property' element item by position.
getPropertyList() - Method in class org.dataone.service.types.v2.MediaType: Get the list of 'property' element items.
getPropertyList() - Method in class org.dataone.service.types.v2.Node: Get the list of 'property' element items.
getProtocol() - Method in class org.dataone.mimemultipart.MultipartRequest
getQueryEngine(int) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get 'queryEngine' element item by position.
getQueryEngineDescription(String) - Method in interface org.dataone.service.cn.v1.CNRead
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.cn.v2.CNRead
getQueryEngineDescription(String) - Method in interface org.dataone.service.mn.v1.MNQuery
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.mn.v2.MNQuery
getQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get the list of 'queryEngine' element items.
getQueryEngineVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'queryEngineVersion' element value.
getQueryField(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get 'queryField' element item by position.
getQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the list of 'queryField' element items.
getQuerySchemaVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the 'querySchemaVersion' element value.
getQueryString() - Method in class org.dataone.mimemultipart.MultipartRequest
getReader() - Method in class org.dataone.mimemultipart.MultipartRequest
getRealPath(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteHost() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemotePort() - Method in class org.dataone.mimemultipart.MultipartRequest
getRemoteUser() - Method in class org.dataone.mimemultipart.MultipartRequest
getReplica(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getReplica(int) - Method in class org.dataone.service.types.v1.SystemMetadata: Get 'replica' element item by position.
getReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the list of 'replica' element items.
getReplicaMemberNode() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicaMemberNode' element value.
getReplicationAllowed() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the 'replicationAllowed' attribute value.
getReplicationPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'replicationPolicy' element value.
getReplicationStatus() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicationStatus' element value.
getReplicaVerified() - Method in class org.dataone.service.types.v1.Replica: Get the 'replicaVerified' element value.
getRequestDispatcher(String) - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestedSessionId() - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestURI() - Method in class org.dataone.mimemultipart.MultipartRequest
getRequestURL() - Method in class org.dataone.mimemultipart.MultipartRequest
getResetConfiguration() - Static method in class org.dataone.configuration.Settings
getResource() - Method in class org.dataone.service.util.D1Url
getRestriction(int) - Method in class org.dataone.service.types.v1.Service: Get 'restriction' element item by position.
getRestrictionList() - Method in class org.dataone.service.types.v1.Service: Get the list of 'restriction' element items.
getRightsHolder(int) - Method in class org.dataone.service.types.v1.Group: Get 'rightsHolder' element item by position.
getRightsHolder() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'rightsHolder' element value.
getRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Get the list of 'rightsHolder' element items.
getSchedule() - Method in class org.dataone.service.types.v1.Synchronization: Get the 'schedule' element value.
getScheme() - Method in class org.dataone.mimemultipart.MultipartRequest
getSec() - Method in class org.dataone.service.types.v1.Schedule: Get the 'sec' attribute value.
getSerialVersion() - Method in class org.dataone.service.types.v1.DescribeResponse: get the SerialVersion of the object SystemMetadata
getSerialVersion() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'serialVersion' element value.
getSeriesId() - Method in class org.dataone.service.types.v2.SystemMetadata: Get the 'seriesId' element value.
getServerName() - Method in class org.dataone.mimemultipart.MultipartRequest
getServerPort() - Method in class org.dataone.mimemultipart.MultipartRequest
getService(int) - Method in class org.dataone.service.types.v1.Services: Get 'service' element item by position.
getServiceList() - Method in class org.dataone.service.types.v1.Services: Get the list of 'service' element items.
getServices() - Method in class org.dataone.service.types.v1.Node: Get the 'services' element value.
getServletContext() - Method in class org.dataone.mimemultipart.MultipartRequest
getServletPath() - Method in class org.dataone.mimemultipart.MultipartRequest
getSession(boolean) - Method in class org.dataone.mimemultipart.MultipartRequest
getSession() - Method in class org.dataone.mimemultipart.MultipartRequest
getSize() - Method in class org.dataone.service.types.v1.ObjectInfo: Get the 'size' element value.
getSize() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'size' element value.
getSpaceAllocated() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the 'spaceAllocated' element value.
getStart() - Method in class org.dataone.service.types.v1.Slice: Get the 'start' attribute value.
getState() - Method in class org.dataone.service.types.v1.Node: Get the 'state' attribute value.
getSubject(int) - Method in class org.dataone.service.types.v1.AccessRule: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Group: Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.Node: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Person: Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.Session: Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.SubjectList: Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'subject' element value.
getSubjectInfo(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
getSubjectInfo() - Method in class org.dataone.service.types.v1.Session: Get the 'subjectInfo' element value.
getSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Get the list of 'subject' element items.
getSubmitter() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the 'submitter' element value.
getSuccess() - Method in class org.dataone.service.types.v1.Ping: Get the 'success' attribute value.
getSynchronization() - Method in class org.dataone.service.types.v1.Node: Get the 'synchronization' element value.
getSystemMetadata(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
getSystemMetadata(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
getTotal() - Method in class org.dataone.service.types.v1.Slice: Get the 'total' attribute value.
getTraceDetail(String) - Method in exception org.dataone.service.exceptions.BaseException: Get the value of one of the trace detail parametersm retrieved by its key value.
getTraceKeySet() - Method in exception org.dataone.service.exceptions.BaseException: Return a Set representation of all of the keys for the trace values in this exception.
getType() - Method in class org.dataone.service.types.v1.Node: Get the 'type' attribute value.
getType() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'type' element value.
getType() - Method in class org.dataone.service.types.v2.Property: Get the 'type' attribute value.
getUrl() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the 'url' element value.
getUrl() - Method in class org.dataone.service.util.D1Url
getUserAgent() - Method in class org.dataone.service.types.v1.LogEntry: Get the 'userAgent' element value.
getUserAgent() - Method in class org.dataone.service.types.v2.LogEntry: Get the 'userAgent' element value.
getUserPrincipal() - Method in class org.dataone.mimemultipart.MultipartRequest
getValue() - Method in class org.dataone.service.types.v1.Checksum: Get the extension value.
getValue() - Method in class org.dataone.service.types.v1.Identifier: Get the 'Identifier' complexType value.
getValue() - Method in class org.dataone.service.types.v1.NodeReference: Get the 'NodeReference' complexType value.
getValue() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Get the 'ObjectFormatIdentifier' simpleType value.
getValue() - Method in class org.dataone.service.types.v1.Subject: Get the 'Subject' complexType value.
getValue() - Method in class org.dataone.service.types.v2.MediaTypeProperty: Get the extension value.
getValue() - Method in class org.dataone.service.types.v2.Property: Get the extension value.
getVerified() - Method in class org.dataone.service.types.v1.Person: Get the 'verified' element value.
getVersion(int) - Method in class org.dataone.service.types.v1.ObjectLocation: Get 'version' element item by position.
getVersion() - Method in class org.dataone.service.types.v1.Service: Get the 'version' attribute value.
getVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the list of 'version' element items.
getWday() - Method in class org.dataone.service.types.v1.Schedule: Get the 'wday' attribute value.
getYear() - Method in class org.dataone.service.types.v1.Schedule: Get the 'year' attribute value.
givenName - Variable in class org.dataone.service.types.v1.Person
grabAccessPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabAllowListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessPolicy
grabPermissionListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
grabReplicaListNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabReplicationPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.Node
Group - Class in org.dataone.service.types.v1: Group represents metadata about a :term:`Subject` that represents a collection of other Subjects.
Group() - Constructor for class org.dataone.service.types.v1.Group
group - Variable in class org.dataone.service.types.v1.SubjectInfo
groupName - Variable in class org.dataone.service.types.v1.Group

H

hashCode() - Method in class org.dataone.service.types.v1.Identifier: return the hashcode of Identifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.NodeReference: return the hashcode of NodeReference's string value.
hashCode() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: return the hashcode of ObjectFormatIdentifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.Subject: return the hashcode of Subject's string value.
hasMember - Variable in class org.dataone.service.types.v1.Group
hasReservation(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
HEAD - Static variable in class org.dataone.service.util.Constants: HTTP Verb HEAD
hour - Variable in class org.dataone.service.types.v1.Schedule

I

Identifier - Class in org.dataone.service.types.v1: An :term:`identifier` (:term:`PID`) in the DataONE system that is used to uniquely and globally identify an object.
Identifier() - Constructor for class org.dataone.service.types.v1.Identifier
identifier - Variable in class org.dataone.service.types.v1.LogEntry
identifier - Variable in class org.dataone.service.types.v1.Node
identifier - Variable in class org.dataone.service.types.v1.ObjectInfo
identifier - Variable in class org.dataone.service.types.v1.ObjectLocationList
identifier - Variable in class org.dataone.service.types.v1.SystemMetadata
identifier - Variable in class org.dataone.service.types.v2.LogEntry
IdentifierNotUnique - Exception in org.dataone.service.exceptions: The DataONE IdentifierNotUnique exception, raised when a requested identifier has already been used or reserved.
IdentifierNotUnique(String, String) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
IdentifierNotUnique(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
InsufficientResources - Exception in org.dataone.service.exceptions: The DataONE InsufficientResources exception, raised when insufficient space, bandwidth, or other resources are available to complete a request.
InsufficientResources(String, String) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InsufficientResources(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
InvalidCredentials - Exception in org.dataone.service.exceptions: The DataONE InvalidCredentials exception, raised when a request is issued for which the credentials were not validated.
InvalidCredentials(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidCredentials(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
InvalidRequest - Exception in org.dataone.service.exceptions: The DataONE InvalidRequest exception, raised when a request is issued for which one or more parameters provided in the call were invalid.
InvalidRequest(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidRequest(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
InvalidSystemMetadata - Exception in org.dataone.service.exceptions: The DataONE InvalidSystemMetadata exception, raised when a request is issued and the supplied system metadata is invalid.
InvalidSystemMetadata(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidSystemMetadata(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
InvalidToken - Exception in org.dataone.service.exceptions: The DataONE InvalidToken exception, raised when supplied authentication token could not be verified as being valid.
InvalidToken(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
InvalidToken(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
ipAddress - Variable in class org.dataone.service.types.v1.LogEntry
ipAddress - Variable in class org.dataone.service.types.v2.LogEntry
isAsyncStarted() - Method in class org.dataone.mimemultipart.MultipartRequest
isAsyncSupported() - Method in class org.dataone.mimemultipart.MultipartRequest
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v2.CNAuthorization
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization: Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v2.MNAuthorization
isAuthorized(Collection<Subject>, Permission, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.AuthUtils: Queries the systemMetadata to see if one of the given subjects is allowed the specified permission against the given systemMetadata
isCNAuthorityForSystemMetadataUpdate(NodeList, SystemMetadata) - Static method in class org.dataone.service.types.v2.util.AuthUtils: the CN is the authority for systemMetadata updates only for v1 MNs that implement MNStorage services.
isException() - Method in class org.dataone.service.util.ExceptionalInputStream
isMemberOf - Variable in class org.dataone.service.types.v1.Person
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil: Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil: Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMultipartContent(HttpServletRequest) - Static method in class org.dataone.mimemultipart.MultipartRequestResolver
isNodeAuthorized(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNReplication
isReplicate() - Method in class org.dataone.service.types.v1.Node: Get the 'replicate' attribute value.
isRequestedSessionIdFromCookie() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdFromURL() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdFromUrl() - Method in class org.dataone.mimemultipart.MultipartRequest
isRequestedSessionIdValid() - Method in class org.dataone.mimemultipart.MultipartRequest
isReturnable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'returnable' element value.
isSearchable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'searchable' element value.
isSecure() - Method in class org.dataone.mimemultipart.MultipartRequest
isSortable() - Method in class org.dataone.service.types.v1_1.QueryField: Get the 'sortable' element value.
isSynchronize() - Method in class org.dataone.service.types.v1.Node: Get the 'synchronize' attribute value.
isUserInRole(String) - Method in class org.dataone.mimemultipart.MultipartRequest

J

jaxbContextMap - Static variable in class org.dataone.service.util.TypeMarshaller
joinToUrlWith(String, String) - Method in class org.dataone.service.util.D1Url: use this method to avoid inadvertent duplication of the joining character The most common case is when a baseUrl contains a trailing slash and you want to append another path elements.

K

key - Variable in class org.dataone.service.types.v2.OptionList
key - Variable in class org.dataone.service.types.v2.Property

L

lastCompleteHarvest - Variable in class org.dataone.service.types.v1.Synchronization
lastHarvested - Variable in class org.dataone.service.types.v1.Synchronization
lastSuccess - Variable in class org.dataone.service.types.v1.Ping
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v1.CNCore
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v2.CNCore
listFormats() - Method in interface org.dataone.service.cn.v1.CNCore
listFormats() - Method in interface org.dataone.service.cn.v2.CNCore
listFormats() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl: List the object formats registered with the object format service.
listNodes() - Method in interface org.dataone.service.cn.v1.CNCore
listNodes() - Method in interface org.dataone.service.cn.v2.CNCore
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, NodeReference, Identifier, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNRead
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, Identifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
listQueryEngines() - Method in interface org.dataone.service.cn.v1.CNRead
listQueryEngines(Session) - Method in interface org.dataone.service.cn.v2.CNRead
listQueryEngines() - Method in interface org.dataone.service.mn.v1.MNQuery
listQueryEngines(Session) - Method in interface org.dataone.service.mn.v2.MNQuery
listSubjects(String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNIdentity
listViews() - Method in interface org.dataone.service.cn.v2.CNView
listViews(Session) - Method in interface org.dataone.service.mn.v2.MNView
Log - Class in org.dataone.service.types.v1: Represents a collection of :class:`Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v1.Log
Log - Class in org.dataone.service.types.v2: Extends :class:`Types.Log` to represent a collection of :class:`v2_0.Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v2.Log
log - Static variable in class org.dataone.service.util.ExceptionHandler
logEntry - Variable in class org.dataone.service.types.v1.Log
LogEntry - Class in org.dataone.service.types.v1: A single log entry as reported by a Member Node or Coordinating Node through the :func:`MNCore.getLogRecords` or :func:`CNCore.getLogRecords` methods.
LogEntry() - Constructor for class org.dataone.service.types.v1.LogEntry
logEntry - Variable in class org.dataone.service.types.v2.Log
LogEntry - Class in org.dataone.service.types.v2: Extends :class:`Types.LogEntry` by relaxing the value space for the *event* element.
LogEntry() - Constructor for class org.dataone.service.types.v2.LogEntry
logger - Static variable in class org.dataone.service.types.v1.TypeFactory
login(String, String) - Method in class org.dataone.mimemultipart.MultipartRequest
logout() - Method in class org.dataone.mimemultipart.MultipartRequest

M

mapIdentity(Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Convenience method of transferring nodeId and nodeBaseURL into a Map
marshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
marshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter: a valid accessRule has at least one Permission and at least one Subject
marshal(Date) - Method in class org.dataone.service.util.DateMarshallingAdapter
marshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
MarshallingException - Exception in org.dataone.exceptions: A class to represent any exception during marshalling or unmarshalling data objects, typically org.dataone.service.types, but not exclusively.
MarshallingException() - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String, Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
MarshallingException(String, Throwable, boolean, boolean) - Constructor for exception org.dataone.exceptions.MarshallingException
marshalTypeToFile(Object, String) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided file.
marshalTypeToOutputStream(Object, OutputStream) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided outputStream.
marshalTypeToOutputStream(Object, OutputStream, String) - Static method in class org.dataone.service.util.TypeMarshaller: Marshalls the typeObject to the provided outputStream.
maxObjectSize - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
mday - Variable in class org.dataone.service.types.v1.Schedule
MediaType - Class in org.dataone.service.types.v2: Value drawn from the value space of IANA Media Types ( http://www.iana.org/assignments/media-types/media-types.xhtml ).
MediaType() - Constructor for class org.dataone.service.types.v2.MediaType
mediaType - Variable in class org.dataone.service.types.v2.ObjectFormat
mediaType - Variable in class org.dataone.service.types.v2.SystemMetadata
MediaTypeProperty - Class in org.dataone.service.types.v2: Additional optional properties for MediaType as described by IANA.
MediaTypeProperty() - Constructor for class org.dataone.service.types.v2.MediaTypeProperty
methodName - Variable in class org.dataone.service.types.v1.ServiceMethodRestriction
min - Variable in class org.dataone.service.types.v1.Schedule
MNAuthorization - Interface in org.dataone.service.mn.tier2.v1: The DataONE Member Node Tier 2 Authorization interface.
MNAuthorization - Interface in org.dataone.service.mn.tier2.v2: The DataONE Member Node Tier 2 Authorization interface.
MNCore - Interface in org.dataone.service.mn.tier1.v1: The DataONE Member Node Tier 1 Core interface.
MNCore - Interface in org.dataone.service.mn.tier1.v2: The DataONE Member Node Tier 1 Core interface.
MNPackage - Interface in org.dataone.service.mn.v2: The DataONE Member Node Optional Package interface for providing complete data package contents in a standardized format (targeting BagIt).
MNQuery - Interface in org.dataone.service.mn.v1: The DataONE MemberNode Optional Query interface.
MNQuery - Interface in org.dataone.service.mn.v2: The DataONE MemberNode Optional Query interface.
MNRead - Interface in org.dataone.service.mn.tier1.v1: The DataONE Member Node Tier 1 Read interface.
MNRead - Interface in org.dataone.service.mn.tier1.v2: The DataONE Member Node Tier 1 Read interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v1: The DataONE Member Node Tier 4 Replication interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v2: The DataONE Member Node Tier 4 Replication interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v1: The DataONE Member Node Tier 3 Storage interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v2: The DataONE Member Node Tier 3 Storage interface.
MNView - Interface in org.dataone.service.mn.v2: The DataONE MemberNode Optional View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
mon - Variable in class org.dataone.service.types.v1.Schedule
MonitorInfo - Class in org.dataone.service.types.v1: A single log entry as reported by a Member Node or Coordinating Node through the getMonitorInfos methods.
MonitorInfo() - Constructor for class org.dataone.service.types.v1.MonitorInfo
MonitorList - Class in org.dataone.service.types.v1: Schema fragment(s) for this class:
MonitorList() - Constructor for class org.dataone.service.types.v1.MonitorList
MultipartRequest - Class in org.dataone.mimemultipart: Wrap a HttpServletRequest and add two Map attributes to save Form Multipart files and Parameters.
MultipartRequest(HttpServletRequest, Map<String, File>, Map<String, List<String>>) - Constructor for class org.dataone.mimemultipart.MultipartRequest: Create a new MultipartParsingResult.
MultipartRequestResolver - Class in org.dataone.mimemultipart: DataOne conversion of HttpServletRequests into a DataONE MultipartRequest via Jakarta Commons FileUpload 1.2 or above.
MultipartRequestResolver() - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver: constructor.
MultipartRequestResolver(String) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
MultipartRequestResolver(String, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
MultipartRequestResolver(String, int, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
multivalued - Variable in class org.dataone.service.types.v1_1.QueryField

N

name - Variable in class org.dataone.service.types.v1.Node
name - Variable in class org.dataone.service.types.v1.Service
name - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
name - Variable in class org.dataone.service.types.v1_1.QueryField
name - Variable in class org.dataone.service.types.v2.MediaType
name - Variable in class org.dataone.service.types.v2.MediaTypeProperty
Node - Class in org.dataone.service.types.v1: A set of values that describe a member or coordinating node, its Internet location, and the services it supports.
Node() - Constructor for class org.dataone.service.types.v1.Node
node - Variable in class org.dataone.service.types.v1.NodeList
Node - Class in org.dataone.service.types.v2: Extends the Version 1.x :class:`Types.Node` by adding an optional unbounded parameter entry providing additional simple metadata relevant to a Node.
Node() - Constructor for class org.dataone.service.types.v2.Node
node - Variable in class org.dataone.service.types.v2.NodeList
nodeIdentifier - Variable in class org.dataone.service.types.v1.LogEntry
nodeIdentifier - Variable in class org.dataone.service.types.v1.ObjectLocation
nodeIdentifier - Variable in class org.dataone.service.types.v2.LogEntry
NodeList - Class in org.dataone.service.types.v1: A list of :class:`Types.Node` entries returned by :func:`CNCore.listNodes()`.NodeList is described in :mod:`NodeList`.
NodeList() - Constructor for class org.dataone.service.types.v1.NodeList
NodeList - Class in org.dataone.service.types.v2: A list of :class:`v2_0.Types.Node` entries returned by :func:`CNCore.listNodes()`.
NodeList() - Constructor for class org.dataone.service.types.v2.NodeList
NodelistUtil - Class in org.dataone.service.types.v1.util: Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v1.util.NodelistUtil
NodelistUtil - Class in org.dataone.service.types.v2.util: Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v2.util.NodelistUtil
NodeReference - Class in org.dataone.service.types.v1: A unique identifier for a DataONE Node.
NodeReference() - Constructor for class org.dataone.service.types.v1.NodeReference
nodeReplicationPolicy - Variable in class org.dataone.service.types.v1.Node
NodeReplicationPolicy - Class in org.dataone.service.types.v1: The overall replication policy for the node that expresses constraints on object size, total objects, source nodes, and object format types.
NodeReplicationPolicy() - Constructor for class org.dataone.service.types.v1.NodeReplicationPolicy
NodeState - Enum in org.dataone.service.types.v1: An indicator of the current node accessibility.
NodeType - Enum in org.dataone.service.types.v1: The type of this node, which is either *mn* for Member Nodes, or *cn* for Coordinating Nodes.
NotAuthorized - Exception in org.dataone.service.exceptions: The DataONE NotAuthorized exception, raised when the supplied identity information is not authorized for the requested operation.
NotAuthorized(String, String) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotAuthorized(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
NotFound - Exception in org.dataone.service.exceptions: The DataONE NotFound exception, raised when an object is not present on the node where the exception was raised.
NotFound(String, String) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotFound(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
NotImplemented - Exception in org.dataone.service.exceptions: The DataONE NotImplemented exception, raised when a request is issued for a service that is not implemented by this node.
NotImplemented(String, String) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
NotImplemented(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
numberReplicas - Variable in class org.dataone.service.types.v1.ReplicationPolicy

O

ObjectFactory - Class in org.dataone.service.types.v1: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v1_1: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1_1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1_1.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v2: This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v2 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v2.ObjectFactory: Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v2
ObjectFormat - Class in org.dataone.service.types.v1: One value from the DataONE Object Format Vocabulary which is returned by :func:`CNCore.getFormat()`.An *ObjectFormat* is the structure returned from the :func:`CNCore.getFormat()` method of the CN REST interface.
ObjectFormat() - Constructor for class org.dataone.service.types.v1.ObjectFormat
objectFormat - Variable in class org.dataone.service.types.v1.ObjectFormatList
ObjectFormat - Class in org.dataone.service.types.v2: Extends Version 1.x :class:`Types.ObjectFormat` by adding :term:`mediaType` and :term:`extension` elements.
ObjectFormat() - Constructor for class org.dataone.service.types.v2.ObjectFormat
objectFormat - Variable in class org.dataone.service.types.v2.ObjectFormatList
ObjectFormatIdentifier - Class in org.dataone.service.types.v1: A string used to identify an instance of :class:`Types.ObjectFormat` and MUST be unique within an instance of :class:`Types.ObjectFormatList`.
ObjectFormatIdentifier() - Constructor for class org.dataone.service.types.v1.ObjectFormatIdentifier
ObjectFormatList - Class in org.dataone.service.types.v1: An ObjectFormatList is the structure returned from the :func:`CNCore.listFormats()` method of the CN REST interface.
ObjectFormatList() - Constructor for class org.dataone.service.types.v1.ObjectFormatList
ObjectFormatList - Class in org.dataone.service.types.v2: Extends :class:`Types.ObjectFormatList` to provide a list of :class:`v2_0.Types.ObjectFormat`.
ObjectFormatList() - Constructor for class org.dataone.service.types.v2.ObjectFormatList
objectFormatList - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
objectFormatMap - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
ObjectFormatServiceImpl - Class in org.dataone.service.types.v2.util
ObjectFormatServiceImpl() - Constructor for class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
ObjectInfo - Class in org.dataone.service.types.v1: Metadata about an object, representing a subset of the metadata found in :class:`Types.SystemMetadata`.
ObjectInfo() - Constructor for class org.dataone.service.types.v1.ObjectInfo
ObjectList - Class in org.dataone.service.types.v1: A list of object locations (nodes) from which the object can be retrieved.
ObjectList() - Constructor for class org.dataone.service.types.v1.ObjectList
ObjectLocation - Class in org.dataone.service.types.v1: Portion of an :class:`Types.ObjectLocationList` indicating the node from which the object can be retrieved.
ObjectLocation() - Constructor for class org.dataone.service.types.v1.ObjectLocation
objectLocation - Variable in class org.dataone.service.types.v1.ObjectLocationList
ObjectLocationList - Class in org.dataone.service.types.v1: An *ObjectLocationList* is the structure returned from the :func:`CNRead.resolve` method of the CN REST interface.
ObjectLocationList() - Constructor for class org.dataone.service.types.v1.ObjectLocationList
obsoletedBy - Variable in class org.dataone.service.types.v1.SystemMetadata
obsoletes - Variable in class org.dataone.service.types.v1.SystemMetadata
option - Variable in class org.dataone.service.types.v2.OptionList
OptionList - Class in org.dataone.service.types.v2: A list of options that indicate the possible values for a DataONE service.
OptionList() - Constructor for class org.dataone.service.types.v2.OptionList
org.dataone.configuration - package org.dataone.configuration
org.dataone.exceptions - package org.dataone.exceptions
org.dataone.mimemultipart - package org.dataone.mimemultipart
org.dataone.service.cn.v1 - package org.dataone.service.cn.v1
org.dataone.service.cn.v2 - package org.dataone.service.cn.v2
org.dataone.service.exceptions - package org.dataone.service.exceptions
org.dataone.service.mn.tier1.v1 - package org.dataone.service.mn.tier1.v1
org.dataone.service.mn.tier1.v2 - package org.dataone.service.mn.tier1.v2
org.dataone.service.mn.tier2.v1 - package org.dataone.service.mn.tier2.v1
org.dataone.service.mn.tier2.v2 - package org.dataone.service.mn.tier2.v2
org.dataone.service.mn.tier3.v1 - package org.dataone.service.mn.tier3.v1
org.dataone.service.mn.tier3.v2 - package org.dataone.service.mn.tier3.v2
org.dataone.service.mn.tier4.v1 - package org.dataone.service.mn.tier4.v1
org.dataone.service.mn.tier4.v2 - package org.dataone.service.mn.tier4.v2
org.dataone.service.mn.v1 - package org.dataone.service.mn.v1
org.dataone.service.mn.v2 - package org.dataone.service.mn.v2
org.dataone.service.types.v1 - package org.dataone.service.types.v1
org.dataone.service.types.v1.util - package org.dataone.service.types.v1.util
org.dataone.service.types.v1_1 - package org.dataone.service.types.v1_1
org.dataone.service.types.v2 - package org.dataone.service.types.v2
org.dataone.service.types.v2.util - package org.dataone.service.types.v2.util
org.dataone.service.util - package org.dataone.service.util
originMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata

P

permission - Variable in class org.dataone.service.types.v1.AccessRule
Permission - Enum in org.dataone.service.types.v1: Java class for Permission.
Person - Class in org.dataone.service.types.v1: *Person* represents metadata about a :term:`Principal` that is a person and that can be used by clients and nodes for :class:`Types.AccessPolicy` information.
Person() - Constructor for class org.dataone.service.types.v1.Person
person - Variable in class org.dataone.service.types.v1.SubjectInfo
ping() - Method in interface org.dataone.service.cn.v1.CNCore
ping() - Method in interface org.dataone.service.cn.v2.CNCore
ping() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
ping() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
ping - Variable in class org.dataone.service.types.v1.Node
Ping - Class in org.dataone.service.types.v1: Store results from the :func:`MNCore.ping` method.
Ping() - Constructor for class org.dataone.service.types.v1.Ping
POST - Static variable in class org.dataone.service.util.Constants: HTTP Verb POST
preference - Variable in class org.dataone.service.types.v1.ObjectLocation
preferredMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
property - Variable in class org.dataone.service.types.v2.MediaType
property - Variable in class org.dataone.service.types.v2.Node
Property - Class in org.dataone.service.types.v2: Additional Property elements can be included to describe the Node in more detail.
Property() - Constructor for class org.dataone.service.types.v2.Property
PUBLIC_SUBJECT - Static variable in class org.dataone.service.util.Constants: Deprecated.
PUT - Static variable in class org.dataone.service.util.Constants: HTTP Verb PUT

Q

query(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
query(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
query(String, String) - Method in interface org.dataone.service.mn.v1.MNQuery
query(Session, String, String) - Method in interface org.dataone.service.mn.v2.MNQuery
queryEngine - Variable in class org.dataone.service.types.v1_1.QueryEngineList
QueryEngineDescription - Class in org.dataone.service.types.v1_1: Describes a query engine that can be used to search content on the node.
QueryEngineDescription() - Constructor for class org.dataone.service.types.v1_1.QueryEngineDescription
QueryEngineList - Class in org.dataone.service.types.v1_1: A list of query engine names that indicate the possible values for CNRead.getQueryEngineDescription and CNRead.query REST API endpoints.
QueryEngineList() - Constructor for class org.dataone.service.types.v1_1.QueryEngineList
queryEngineVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
queryField - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
QueryField - Class in org.dataone.service.types.v1_1: Schema fragment(s) for this class:
QueryField() - Constructor for class org.dataone.service.types.v1_1.QueryField
querySchemaVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription

R

register(Node) - Method in interface org.dataone.service.cn.v1.CNRegister
register(Session, Node) - Method in interface org.dataone.service.cn.v1.CNRegister: Deprecated.
register(Session, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
registerAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
registerSystemMetadata(Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
removeAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
removeMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
Replica - Class in org.dataone.service.types.v1: Replica information that describes the existence of a replica of some object managed by the DataONE infrastructure, and its status.
Replica() - Constructor for class org.dataone.service.types.v1.Replica
replica - Variable in class org.dataone.service.types.v1.SystemMetadata
replicaMemberNode - Variable in class org.dataone.service.types.v1.Replica
replicate(SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication: Deprecated.
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v2.MNReplication
replicate - Variable in class org.dataone.service.types.v1.Node
replicationAllowed - Variable in class org.dataone.service.types.v1.ReplicationPolicy
ReplicationPolicy - Class in org.dataone.service.types.v1: The *ReplicationPolicy* for an object defines if replication should be attempted for this object, and if so, how many replicas should be maintained.
ReplicationPolicy() - Constructor for class org.dataone.service.types.v1.ReplicationPolicy
replicationPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
ReplicationPolicyMarshallingAdapter - Class in org.dataone.service.util
ReplicationPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
replicationStatus - Variable in class org.dataone.service.types.v1.Replica
ReplicationStatus - Enum in org.dataone.service.types.v1: An enumerated string value indicating the current state of a replica of an object.
replicaVerified - Variable in class org.dataone.service.types.v1.Replica
reportSubtypesListing(Object, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil: Generates a tabular listing of the field names and values, suitable for display.
requestMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
reserveIdentifier(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
resolve(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
resolveMultipart(HttpServletRequest) - Method in class org.dataone.mimemultipart.MultipartRequestResolver: get the parts of a
RESOURCE_ACCESS - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API resource which handles access operations
RESOURCE_ACCOUNT_MAPPING - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-mapping operations
RESOURCE_ACCOUNT_MAPPING_PENDING - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-mapping request operations
RESOURCE_ACCOUNT_VERIFICATION - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account-verification request operations
RESOURCE_ACCOUNTS - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles account operations
RESOURCE_ARCHIVE - Static variable in class org.dataone.service.util.Constants: Common API resource which handles archive operations
RESOURCE_AUTHORIZATION - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API Resource which handles authorization checks
RESOURCE_CHECKSUM - Static variable in class org.dataone.service.util.Constants: READ API resource which handles checksum operations
RESOURCE_DIAG_OBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic object echoing operations
RESOURCE_DIAG_SUBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic credential echoing operations
RESOURCE_DIAG_SYSMETA - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles diagnostic sysmeta echoing operations
RESOURCE_ERROR - Static variable in class org.dataone.service.util.Constants: READ API resource which handles synchronization error operations
RESOURCE_FORMATS - Static variable in class org.dataone.service.util.Constants: CORE API Resource which handles object formats operations
RESOURCE_GENERATE - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles identifier generation operations
RESOURCE_GROUPS - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles group-related operations
RESOURCE_GROUPS_REMOVE - Static variable in class org.dataone.service.util.Constants: IDENTITY API resource which handles group-member-remove operations
RESOURCE_LOG - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles logging operations
RESOURCE_META - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata operations
RESOURCE_META_CHANGED - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata update operations
RESOURCE_META_OBSOLETEDBY - Static variable in class org.dataone.service.util.Constants: Common API resource which handles SystemMetadata update operations
RESOURCE_MONITOR_EVENT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles event monitoring operations
RESOURCE_MONITOR_OBJECT - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles object monitoring operations
RESOURCE_MONITOR_PING - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles ping monitoring operations
RESOURCE_MONITOR_STATUS - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles status monitoring operations
RESOURCE_NODE - Static variable in class org.dataone.service.util.Constants: Common API resource which handles node operations
RESOURCE_OBJECTS - Static variable in class org.dataone.service.util.Constants: Common API resource which handles document operations
RESOURCE_OWNER - Static variable in class org.dataone.service.util.Constants: AUTHORIZATION API Resource which handles owner checks
RESOURCE_PACKAGES - Static variable in class org.dataone.service.util.Constants: Common API resource which handles package operations
RESOURCE_QUERY - Static variable in class org.dataone.service.util.Constants: Common API resource which handles query operations
RESOURCE_RELATIONSHIP - Static variable in class org.dataone.service.util.Constants: READ API resource which handles relationship assertion operations
RESOURCE_REPLICAS - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint representing the replicas collection
RESOURCE_REPLICATE - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication initiation
RESOURCE_REPLICATION_AUTHORIZED - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication authorization
RESOURCE_REPLICATION_DELETE_REPLICA - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replica deletes
RESOURCE_REPLICATION_META - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication metadata updates
RESOURCE_REPLICATION_NOTIFY - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication status updates
RESOURCE_REPLICATION_POLICY - Static variable in class org.dataone.service.util.Constants: REPLICATION API endpoint that represents replication policy updates
RESOURCE_RESERVE - Static variable in class org.dataone.service.util.Constants: CORE API resource which handles identifier reserving operations
RESOURCE_RESOLVE - Static variable in class org.dataone.service.util.Constants: READ API resource which handles resolve operations
RESOURCE_SEARCH - Static variable in class org.dataone.service.util.Constants: Common API resource which handles search operations
RESOURCE_SYNCHRONIZE - Static variable in class org.dataone.service.util.Constants: API resource which handles synchronize operations
RESOURCE_VIEWS - Static variable in class org.dataone.service.util.Constants: Common API resource which handles view operations
restriction - Variable in class org.dataone.service.types.v1.Service
returnable - Variable in class org.dataone.service.types.v1_1.QueryField
rightsHolder - Variable in class org.dataone.service.types.v1.Group
rightsHolder - Variable in class org.dataone.service.types.v1.SystemMetadata

S

Schedule - Class in org.dataone.service.types.v1: The schedule on which :term:`synchronization` will run for a particular node.
Schedule() - Constructor for class org.dataone.service.types.v1.Schedule
schedule - Variable in class org.dataone.service.types.v1.Synchronization
search(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
search(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNRead: Deprecated.
search(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
searchable - Variable in class org.dataone.service.types.v1_1.QueryField
sec - Variable in class org.dataone.service.types.v1.Schedule
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that contain the provided Subject.
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that contain the provided Subject.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that are in the provided state.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that are in the provided state.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v1.util.NodelistUtil: Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v2.util.NodelistUtil: Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
serialize(int) - Method in exception org.dataone.service.exceptions.BaseException: Serialize the format in XML, JSON, or HTML format.
serializeBigInteger(BigInteger) - Static method in class org.dataone.service.util.BigIntegerMarshaller
serializeDateToUTC(Date) - Static method in class org.dataone.service.util.DateTimeMarshaller: convert a date to GMT
serialVersion - Variable in class org.dataone.service.types.v1.SystemMetadata
seriesId - Variable in class org.dataone.service.types.v2.SystemMetadata
Service - Class in org.dataone.service.types.v1: The available Dataone Service APIs that are exposed on a Node.
Service() - Constructor for class org.dataone.service.types.v1.Service
service - Variable in class org.dataone.service.types.v1.Services
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v1.CNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v2.CNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v1.MNCore
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v2.MNCore
ServiceFailure - Exception in org.dataone.service.exceptions: The DataONE ServiceFailure exception, raised when a requested service was called but failed to execute the service request due to an internal error, such as misconfiguration, or a missing resource such as a missing data connection, etc.
ServiceFailure(String, String) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceFailure(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
ServiceMethodRestriction - Class in org.dataone.service.types.v1: Describes an optional restriction policy for a given method.
ServiceMethodRestriction() - Constructor for class org.dataone.service.types.v1.ServiceMethodRestriction
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v1.util: Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v2.util: Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil
services - Variable in class org.dataone.service.types.v1.Node
Services - Class in org.dataone.service.types.v1: A list of services that are provided by a node.
Services() - Constructor for class org.dataone.service.types.v1.Services
Session - Class in org.dataone.service.types.v1: Information about the authenticated session for a service transaction.
Session() - Constructor for class org.dataone.service.types.v1.Session
setAccessPolicy(Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization: Deprecated.
use CNCore.updateSystemMetadata()
setAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'accessPolicy' element value.
setAdditionalInfoList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the list of 'additionalInfo' element items.
setAlgorithm(String) - Method in class org.dataone.service.types.v1.Checksum: Set the 'algorithm' attribute value.
setAlgorithmList(List<String>) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Set the list of 'algorithm' element items.
setAllowedNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the list of 'allowedNode' element items.
setAllowedObjectFormatList(List<ObjectFormatIdentifier>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the list of 'allowedObjectFormat' element items.
setAllowList(List<AccessRule>) - Method in class org.dataone.service.types.v1.AccessPolicy: Set the list of 'allow' element items.
setArchived(Boolean) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'archived' element value.
setAttribute(String, Object) - Method in class org.dataone.mimemultipart.MultipartRequest
setAuthoritativeMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'authoritativeMemberNode' element value.
setAvailable(Boolean) - Method in class org.dataone.service.types.v1.Service: Set the 'available' attribute value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.Node: Set the 'baseURL' element value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'baseURL' element value.
setBaseUrl(String) - Method in class org.dataone.service.util.D1Url
setBlockedMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the list of 'blockedMemberNode' element items.
setCharacterEncoding(String) - Method in class org.dataone.mimemultipart.MultipartRequest
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'checksum' element value.
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'checksum' element value.
setCode(int) - Method in exception org.dataone.service.exceptions.BaseException
setContactSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node: Set the list of 'contactSubject' element items.
setCount(int) - Method in class org.dataone.service.types.v1.MonitorInfo: Set the 'count' element value.
setCount(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'count' attribute value.
setDate(Date) - Method in class org.dataone.service.types.v1.MonitorInfo: Set the 'date' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'dateLogged' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'dateLogged' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'dateSysMetadataModified' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'dateSysMetadataModified' element value.
setDateUploaded(Date) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'dateUploaded' element value.
setDescription(String) - Method in class org.dataone.service.types.v1.Node: Set the 'description' element value.
setDescription(String) - Method in class org.dataone.service.types.v2.OptionList: Set the 'description' attribute value.
setDescriptionList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryField: Set the list of 'description' element items.
setDetail_code(String) - Method in exception org.dataone.service.exceptions.BaseException
setEmailList(List<String>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'email' element items.
setEntryId(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'entryId' element value.
setEntryId(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'entryId' element value.
setEquivalentIdentityList(List<Subject>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'equivalentIdentity' element items.
setEvent(Event) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'event' element value.
setEvent(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'event' element value.
setExtension(String) - Method in class org.dataone.service.types.v2.ObjectFormat: Set the 'extension' element value.
setFamilyName(String) - Method in class org.dataone.service.types.v1.Person: Set the 'familyName' element value.
setFileName(String) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'fileName' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'formatId' element value.
setFormatName(String) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatName' element value.
setFormatType(String) - Method in class org.dataone.service.types.v1.ObjectFormat: Set the 'formatType' element value.
setGivenNameList(List<String>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'givenName' element items.
setGroupList(List<Group>) - Method in class org.dataone.service.types.v1.SubjectInfo: Set the list of 'group' element items.
setGroupName(String) - Method in class org.dataone.service.types.v1.Group: Set the 'groupName' element value.
setHasMemberList(List<Subject>) - Method in class org.dataone.service.types.v1.Group: Set the list of 'hasMember' element items.
setHour(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'hour' attribute value.
setIdentifier(String) - Method in exception org.dataone.service.exceptions.BaseException
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'identifier' element value.
setIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.Node: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectLocationList: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'identifier' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'ipAddress' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'ipAddress' element value.
setIsMemberOfList(List<Subject>) - Method in class org.dataone.service.types.v1.Person: Set the list of 'isMemberOf' element items.
setKey(String) - Method in class org.dataone.service.types.v2.OptionList: Set the 'key' attribute value.
setKey(String) - Method in class org.dataone.service.types.v2.Property: Set the 'key' attribute value.
setLastCompleteHarvest(Date) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'lastCompleteHarvest' element value.
setLastHarvested(Date) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'lastHarvested' element value.
setLastSuccess(Date) - Method in class org.dataone.service.types.v1.Ping: Set the 'lastSuccess' attribute value.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v1.Log: Set the list of 'logEntry' element items.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v2.Log: Set the list of 'logEntry' element items.
setMaxObjectSize(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the 'maxObjectSize' element value.
setMday(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'mday' attribute value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFormat: Set the 'mediaType' element value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'mediaType' element value.
setMethodName(String) - Method in class org.dataone.service.types.v1.ServiceMethodRestriction: Set the 'methodName' attribute value.
setMin(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'min' attribute value.
setMon(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'mon' attribute value.
setMonitorInfoList(List<MonitorInfo>) - Method in class org.dataone.service.types.v1.MonitorList: Set the list of 'monitorInfo' element items.
setMultivalued(Boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'multivalued' element value.
setName(String) - Method in class org.dataone.service.types.v1.Node: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1.Service: Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v2.MediaType: Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty: Set the 'name' attribute value.
setNodeId(String) - Method in exception org.dataone.service.exceptions.BaseException: Set the node Id string
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'nodeIdentifier' element value.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v1.NodeList: Set the list of 'node' element items.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v2.NodeList: Set the list of 'node' element items.
setNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.Node: Set the 'nodeReplicationPolicy' element value.
setNumberReplicas(Integer) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the 'numberReplicas' attribute value.
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v1.ObjectFormatList: Set the list of 'objectFormat' element items.
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v2.ObjectFormatList: Set the list of 'objectFormat' element items.
setObjectInfoList(List<ObjectInfo>) - Method in class org.dataone.service.types.v1.ObjectList: Set the list of 'objectInfo' element items.
setObjectLocationList(List<ObjectLocation>) - Method in class org.dataone.service.types.v1.ObjectLocationList: Set the list of 'objectLocation' element items.
setObsoletedBy(Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore: Deprecated.
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v2.CNCore: Deprecated.
the Authoritative Member Node is responsible for obsoleting content using SystemMetadata modifications
setObsoletedBy(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'obsoletedBy' element value.
setObsoletes(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'obsoletes' element value.
setOptionList(List<String>) - Method in class org.dataone.service.types.v2.OptionList: Set the list of 'option' element items.
setOriginMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'originMemberNode' element value.
setPermissionList(List<Permission>) - Method in class org.dataone.service.types.v1.AccessRule: Set the list of 'permission' element items.
setPersonList(List<Person>) - Method in class org.dataone.service.types.v1.SubjectInfo: Set the list of 'person' element items.
setPid(String) - Method in exception org.dataone.service.exceptions.BaseException: Deprecated.
As of release 2.4, replaced by #setIdentifier()
setPing(Ping) - Method in class org.dataone.service.types.v1.Node: Set the 'ping' element value.
setPreference(Integer) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'preference' element value.
setPreferredMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the list of 'preferredMemberNode' element items.
setPropertyList(List<MediaTypeProperty>) - Method in class org.dataone.service.types.v2.MediaType: Set the list of 'property' element items.
setPropertyList(List<Property>) - Method in class org.dataone.service.types.v2.Node: Set the list of 'property' element items.
setQueryEngineList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineList: Set the list of 'queryEngine' element items.
setQueryEngineVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'queryEngineVersion' element value.
setQueryFieldList(List<QueryField>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the list of 'queryField' element items.
setQuerySchemaVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Set the 'querySchemaVersion' element value.
setReplicaList(List<Replica>) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the list of 'replica' element items.
setReplicaMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicaMemberNode' element value.
setReplicate(boolean) - Method in class org.dataone.service.types.v1.Node: Set the 'replicate' attribute value.
setReplicationAllowed(Boolean) - Method in class org.dataone.service.types.v1.ReplicationPolicy: Set the 'replicationAllowed' attribute value.
setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v2.CNReplication: Deprecated.
use CNCore.updateSystemMetadata()
setReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'replicationPolicy' element value.
setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v2.CNReplication
setReplicationStatus(ReplicationStatus) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicationStatus' element value.
setReplicaVerified(Date) - Method in class org.dataone.service.types.v1.Replica: Set the 'replicaVerified' element value.
setResource(String) - Method in class org.dataone.service.util.D1Url
setRestrictionList(List<ServiceMethodRestriction>) - Method in class org.dataone.service.types.v1.Service: Set the list of 'restriction' element items.
setReturnable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'returnable' element value.
setRightsHolder(Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization: Deprecated.
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization: Deprecated.
use CNCore.updateSystemMetadata()
setRightsHolder(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'rightsHolder' element value.
setRightsHolderList(List<Subject>) - Method in class org.dataone.service.types.v1.Group: Set the list of 'rightsHolder' element items.
setSchedule(Schedule) - Method in class org.dataone.service.types.v1.Synchronization: Set the 'schedule' element value.
setSearchable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'searchable' element value.
setSec(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'sec' attribute value.
setSerialVersion(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'serialVersion' element value.
setSeriesId(Identifier) - Method in class org.dataone.service.types.v2.SystemMetadata: Set the 'seriesId' element value.
setServiceList(List<Service>) - Method in class org.dataone.service.types.v1.Services: Set the list of 'service' element items.
setServices(Services) - Method in class org.dataone.service.types.v1.Node: Set the 'services' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.ObjectInfo: Set the 'size' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'size' element value.
setSortable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'sortable' element value.
setSpaceAllocated(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Set the 'spaceAllocated' element value.
setStart(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'start' attribute value.
setState(NodeState) - Method in class org.dataone.service.types.v1.Node: Set the 'state' attribute value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Group: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Person: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Session: Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'subject' element value.
setSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.Session: Set the 'subjectInfo' element value.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.AccessRule: Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node: Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.SubjectList: Set the list of 'subject' element items.
setSubmitter(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata: Set the 'submitter' element value.
setSuccess(Boolean) - Method in class org.dataone.service.types.v1.Ping: Set the 'success' attribute value.
setSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.Node: Set the 'synchronization' element value.
setSynchronize(boolean) - Method in class org.dataone.service.types.v1.Node: Set the 'synchronize' attribute value.
Settings - Class in org.dataone.configuration
setTotal(int) - Method in class org.dataone.service.types.v1.Slice: Set the 'total' attribute value.
setType(NodeType) - Method in class org.dataone.service.types.v1.Node: Set the 'type' attribute value.
setType(String) - Method in class org.dataone.service.types.v1_1.QueryField: Set the 'type' element value.
setType(String) - Method in class org.dataone.service.types.v2.Property: Set the 'type' attribute value.
setUrl(String) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the 'url' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v1.LogEntry: Set the 'userAgent' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v2.LogEntry: Set the 'userAgent' element value.
setValue(String) - Method in class org.dataone.service.types.v1.Checksum: Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v1.Identifier: Set the 'Identifier' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.NodeReference: Set the 'NodeReference' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier: Set the 'ObjectFormatIdentifier' simpleType value.
setValue(String) - Method in class org.dataone.service.types.v1.Subject: Set the 'Subject' complexType value.
setValue(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty: Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v2.Property: Set the extension value.
setVerified(Boolean) - Method in class org.dataone.service.types.v1.Person: Set the 'verified' element value.
setVersion(String) - Method in class org.dataone.service.types.v1.Service: Set the 'version' attribute value.
setVersionList(List<String>) - Method in class org.dataone.service.types.v1.ObjectLocation: Set the list of 'version' element items.
setWday(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'wday' attribute value.
setYear(String) - Method in class org.dataone.service.types.v1.Schedule: Set the 'year' attribute value.
SimpleMultipartEntity - Class in org.dataone.mimemultipart
SimpleMultipartEntity() - Constructor for class org.dataone.mimemultipart.SimpleMultipartEntity
size - Variable in class org.dataone.service.types.v1.ObjectInfo
size - Variable in class org.dataone.service.types.v1.SystemMetadata
sizeAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the number of 'additionalInfo' element items.
sizeAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList: Get the number of 'algorithm' element items.
sizeAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the number of 'allowedNode' element items.
sizeAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy: Get the number of 'allowedObjectFormat' element items.
sizeAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy: Get the number of 'allow' element items.
sizeBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the number of 'blockedMemberNode' element items.
sizeContactSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the number of 'contactSubject' element items.
sizeDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField: Get the number of 'description' element items.
sizeEmailList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'email' element items.
sizeEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'equivalentIdentity' element items.
sizeGivenNameList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'givenName' element items.
sizeGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the number of 'group' element items.
sizeHasMemberList() - Method in class org.dataone.service.types.v1.Group: Get the number of 'hasMember' element items.
sizeIsMemberOfList() - Method in class org.dataone.service.types.v1.Person: Get the number of 'isMemberOf' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v1.Log: Get the number of 'logEntry' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v2.Log: Get the number of 'logEntry' element items.
sizeMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList: Get the number of 'monitorInfo' element items.
sizeNodeList() - Method in class org.dataone.service.types.v1.NodeList: Get the number of 'node' element items.
sizeNodeList() - Method in class org.dataone.service.types.v2.NodeList: Get the number of 'node' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList: Get the number of 'objectFormat' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList: Get the number of 'objectFormat' element items.
sizeObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList: Get the number of 'objectInfo' element items.
sizeObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList: Get the number of 'objectLocation' element items.
sizeOptionList() - Method in class org.dataone.service.types.v2.OptionList: Get the number of 'option' element items.
sizePermissionList() - Method in class org.dataone.service.types.v1.AccessRule: Get the number of 'permission' element items.
sizePersonList() - Method in class org.dataone.service.types.v1.SubjectInfo: Get the number of 'person' element items.
sizePreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy: Get the number of 'preferredMemberNode' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.MediaType: Get the number of 'property' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.Node: Get the number of 'property' element items.
sizeQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList: Get the number of 'queryEngine' element items.
sizeQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription: Get the number of 'queryField' element items.
sizeReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata: Get the number of 'replica' element items.
sizeRestrictionList() - Method in class org.dataone.service.types.v1.Service: Get the number of 'restriction' element items.
sizeRightsHolderList() - Method in class org.dataone.service.types.v1.Group: Get the number of 'rightsHolder' element items.
sizeServiceList() - Method in class org.dataone.service.types.v1.Services: Get the number of 'service' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.AccessRule: Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.Node: Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.SubjectList: Get the number of 'subject' element items.
sizeVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation: Get the number of 'version' element items.
Slice - Class in org.dataone.service.types.v1: An abstract type used as a common base for other types that need to include *count*, *start*, and *total* attributes to indicate which slice of a list is represented by a set of records.The first element in a list is always index 0, i.e.
Slice() - Constructor for class org.dataone.service.types.v1.Slice
sortable - Variable in class org.dataone.service.types.v1_1.QueryField
spaceAllocated - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
start - Variable in class org.dataone.service.types.v1.Slice
startAsync() - Method in class org.dataone.mimemultipart.MultipartRequest
startAsync(ServletRequest, ServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
state - Variable in class org.dataone.service.types.v1.Node
STD_CONFIG_PATH - Static variable in class org.dataone.configuration.Settings
subject - Variable in class org.dataone.service.types.v1.AccessRule
subject - Variable in class org.dataone.service.types.v1.Group
subject - Variable in class org.dataone.service.types.v1.LogEntry
subject - Variable in class org.dataone.service.types.v1.Node
subject - Variable in class org.dataone.service.types.v1.Person
subject - Variable in class org.dataone.service.types.v1.Session
Subject - Class in org.dataone.service.types.v1: An identifier for a Person (user), Group, Organization, or System.The :term:`Subject` is a string that provides a formal name to identify a user or group in the DataONE Identity Management Service.
Subject() - Constructor for class org.dataone.service.types.v1.Subject
subject - Variable in class org.dataone.service.types.v2.LogEntry
SUBJECT_AUTHENTICATED_USER - Static variable in class org.dataone.service.util.Constants
SUBJECT_PUBLIC - Static variable in class org.dataone.service.util.Constants
SUBJECT_VERIFIED_USER - Static variable in class org.dataone.service.util.Constants
subjectInfo - Variable in class org.dataone.service.types.v1.Session
SubjectInfo - Class in org.dataone.service.types.v1: A list of :term:`Subjects`, including both :class:`Types.Person` and :class:`Types.Group` entries returned from the :func:`CNIdentity.getSubjectInfo` service and :func:`CNIdentity.listSubjects` services.
SubjectInfo() - Constructor for class org.dataone.service.types.v1.SubjectInfo
SubjectList - Class in org.dataone.service.types.v1: A list of :term:`Subjects` used for identity/group management Schema fragment(s) for this class:
SubjectList() - Constructor for class org.dataone.service.types.v1.SubjectList
submitter - Variable in class org.dataone.service.types.v1.SystemMetadata
success - Variable in class org.dataone.service.types.v1.Ping
synchronization - Variable in class org.dataone.service.types.v1.Node
Synchronization - Class in org.dataone.service.types.v1: Configuration information for the process by which metadata is harvested from Member Nodes to Coordinating Nodes, including the schedule on which harvesting should occur, and information about the last :term:`synchronization` attempts for the node.
Synchronization() - Constructor for class org.dataone.service.types.v1.Synchronization
SynchronizationFailed - Exception in org.dataone.service.exceptions: The DataONE SynchronizationFailed exception, used as a callback message to a Member Node from a Coordinating Node when an attempt to synchronize some object fails.
SynchronizationFailed(String, String) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
SynchronizationFailed(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
synchronizationFailed(SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead: Deprecated.
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
synchronize(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
synchronize - Variable in class org.dataone.service.types.v1.Node
SystemMetadata - Class in org.dataone.service.types.v1: System metadata (often referred to as :term:`sysmeta`) is the information used by DataONE to track and manage objects across the distributed Coordinating and Member Nodes of the network.
SystemMetadata() - Constructor for class org.dataone.service.types.v1.SystemMetadata
SystemMetadata - Class in org.dataone.service.types.v2: System metadata in DataONE APIs version 2.0 extends the :class:`types.SystemMetadata` definition of version 1.x by adding :term:`seriesId`, :term:`mediaType`, and :term:`fileName` elements.
SystemMetadata() - Constructor for class org.dataone.service.types.v2.SystemMetadata
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
systemMetadataChanged(Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization: Deprecated.

T

TEMP_DIR - Static variable in class org.dataone.service.util.Constants: Deprecated.
this is OS-specific and should not be used
toString() - Method in class org.dataone.service.util.D1Url
total - Variable in class org.dataone.service.types.v1.Slice
trimAndValidateString(String) - Static method in class org.dataone.service.util.D1Url
type - Variable in class org.dataone.service.types.v1.Node
type - Variable in class org.dataone.service.types.v1_1.QueryField
type - Variable in class org.dataone.service.types.v2.Property
TypeCompareUtil - Class in org.dataone.service.types.v1.util: This utility class provides an efficient way to test bean-style data objects (of the same type) for differences in property values.
TypeCompareUtil() - Constructor for class org.dataone.service.types.v1.util.TypeCompareUtil
TypeFactory - Class in org.dataone.service.types.v1: A Factory class for building, cloning, and converting common DataONE types.
TypeFactory() - Constructor for class org.dataone.service.types.v1.TypeFactory
TypeFactory - Class in org.dataone.service.types.v2
TypeFactory() - Constructor for class org.dataone.service.types.v2.TypeFactory
TypeMarshaller - Class in org.dataone.service.util: The standard class used to marshal and unmarshal datatypes to and from input and output streams and file structures.
TypeMarshaller() - Constructor for class org.dataone.service.util.TypeMarshaller

U

unmarshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
unmarshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter
unmarshal(String) - Method in class org.dataone.service.util.DateMarshallingAdapter
unmarshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
unmarshalTypeFromFile(Class<T>, File) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshals the contents of the filenamePath into the specified domainClass.
unmarshalTypeFromFile(Class<T>, String) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshalls the contents of file parameter to the specified domainClass
unmarshalTypeFromStream(Class<T>, InputStream) - Static method in class org.dataone.service.util.TypeMarshaller: Unmarshals the inputStream to the specified domainClass and unequivocally closes the passed in InputStream .
UnsupportedMetadataType - Exception in org.dataone.service.exceptions: The DataONE UnsupportedMetadataType exception, raised when the science metadata document submitted is not of a type that is recognized by the DataONE system.
UnsupportedMetadataType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedMetadataType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
UnsupportedType - Exception in org.dataone.service.exceptions: The DataONE UnsupportedType exception, raised when the information presented appears to be unsupported.
UnsupportedType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
UnsupportedType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
update(Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage: Deprecated.
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
updateAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
updateGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
updateNodeCapabilities(NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister: Deprecated.
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
updateReplicationMetadata(Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication: Deprecated.
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v2.CNReplication
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
url - Variable in class org.dataone.service.types.v1.ObjectLocation
USE_SCHEMA_VALIDATION - Static variable in class org.dataone.service.util.TypeMarshaller
userAgent - Variable in class org.dataone.service.types.v1.LogEntry
userAgent - Variable in class org.dataone.service.types.v2.LogEntry

V

validateAgainstSchema(Object) - Static method in class org.dataone.service.util.TypeMarshaller: A method to validate DataONE types against the schemas registered with the TypeMarshaller.
value - Variable in class org.dataone.service.types.v1.Checksum
value - Variable in class org.dataone.service.types.v1.Identifier
value - Variable in class org.dataone.service.types.v1.NodeReference
value - Variable in class org.dataone.service.types.v1.ObjectFormatIdentifier
value - Variable in class org.dataone.service.types.v1.Subject
value - Variable in class org.dataone.service.types.v2.MediaTypeProperty
value - Variable in class org.dataone.service.types.v2.Property
valueOf(String) - Static method in enum org.dataone.service.types.v1.Event: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeState: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.Permission: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.dataone.service.types.v1.Event: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeState: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.Permission: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.ReplicationStatus: Returns an array containing the constants of this enum type, in the order they are declared.
verified - Variable in class org.dataone.service.types.v1.Person
verifyAccount(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity: Deprecated.
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
version - Variable in class org.dataone.service.types.v1.ObjectLocation
version - Variable in class org.dataone.service.types.v1.Service
VersionMismatch - Exception in org.dataone.service.exceptions: The DataONE VersionMismatch exception, raised when the serialVersion supplied with the request does not match the serialVersion of the target
VersionMismatch(String, String) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
VersionMismatch(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
view(Session, String, Identifier) - Method in interface org.dataone.service.cn.v2.CNView
view(Session, String, Identifier) - Method in interface org.dataone.service.mn.v2.MNView

W

wday - Variable in class org.dataone.service.types.v1.Schedule

X

xmlValue() - Method in enum org.dataone.service.types.v1.Event
xmlValue() - Method in enum org.dataone.service.types.v1.NodeState
xmlValue() - Method in enum org.dataone.service.types.v1.NodeType
xmlValue() - Method in enum org.dataone.service.types.v1.Permission
xmlValue() - Method in enum org.dataone.service.types.v1.ReplicationStatus

Y

year - Variable in class org.dataone.service.types.v1.Schedule

A B C D E F G H I J K L M N O P Q R S T U V W X Y