FailedChanges

Summary

  1. making branch for 0.9.x datamanager library (details)
  2. iMove schema files to xsd directory, and images to img directory. (details)
  3. Refactor build to switch to 2.2.0 version. (details)
  4. Change usage of personnel to individuals (details)
  5. Fix a minor typo (details)
  6. Add ORCID to the examples for userid/directory (details)
  7. Removing unneeded perl script for stripping annotations. (details)
  8. Move removeAnnotation.xsl into the style directory. (details)
  9. Converted members.xml to Markdown format (members.md). (details)
  10. First draft of an eml-semantics module. (details)
  11. Fix markdown syntax on members table. (details)
  12. Remove extraneous attributes, and unneeded `choice`. (details)
  13. Added `annotation` fields for attribute, EntityGroup, and ResourceGroup. (details)
  14. Added annotation fields to example document. (details)
  15. Rename `gradient` to `grad`s. (details)
  16. Added 'unknown' to the maintainence frequency list to fix spelling (details)
  17. Added modern packageId examples (DOI, UUID) to docs. (details)
  18. Add notice about release statis of 2.2.0. (details)
  19. Added `award` field. (details)
  20. Updated documentation for award fields. (details)
  21. Switch sample doc to use 2.2.0 namespace. (details)
  22. Add 'award' element as part of sample.xml as an example. (details)
  23. Adjusted documentation on the 'purpose' field to indicate that it is (details)
  24. renamed citation to usageCitation to reflect comments in issue #259. (details)
  25. Fix outdated references to SVN and listserv (details)
  26. Fix XML syntax errors in internationalization example (details)
  27. Fix invalid lang codes in internationalization example (details)
  28. Added task board to README. (details)
  29. Simple travis build (details)
  30. Switch travis to language generic to avoid ruby build. (details)
  31. Travis badge (details)
  32. Standardize protocol namespace to 'pro'. (details)
  33. Modified build to allow building docs offline. (details)
  34. Add new elements for propertyURI and propertyLabel. (details)
  35. Added EML semantics example document. (details)
  36. Added more complete annotation example. (details)
  37. Improved documentation for personnel element. (details)
  38. Add a local copy of xml.xsd. (details)
  39. Use EML-style camel case field names for `AwardType`. (details)
  40. Fixed spelling in members file. (details)
  41. Modified docbook and test resources to validate and pass tests. (details)
  42. Update eml-party test example with ORCID. (details)
  43. Initial pass at introduction, acknowledgements, and gettingStarted (details)
  44. Rebuilt eml.jar for 2.2.0 support. (details)
  45. Drafted new fields for data paper support. (details)
  46. Make the `award` element valid in the sample EML document. (details)
  47. Add the semantics module to the doc generator. (details)
  48. Add link to GFM in example markdown. (details)
  49. Improve markdown documentation. (details)
  50. Check if the ant tests work in Travis. (details)
  51. added an abstract containing a sample equation eml-data-paper.xml (details)
  52. changed replaced -> augmented (details)
  53. Changed `propertyURI` and label to optional. (details)
  54. Add machine-readable license element. (details)
  55. Rename license element to avoid conflict. (details)
  56. Fix typos in docs. (details)
  57. 1) stmml.xsd with two new attributes for a unit: deprecatedInFavorOf and (details)
  58. Revert to eml-unitDictionary.xml to (details)
  59. add deprecatedInFavorOf information (details)
  60. Further fleshed out sections in example data paper. (details)
  61. Added support for new citation formats, fields, and inline citations. (details)
  62. Fix validation error on schema location for data paper sample doc. (details)
  63. Check that Travis build fails when tests fail or error. (details)
  64. Fix data paper sample so that it validates. (details)
  65. Add new units (details)
  66. udunitSynonym for all units (details)
  67. Test file with all 2.1.1 units (details)
  68. Schema location change (details)
  69. set the namespace for stmml-1.2 in the root element. added a missing (details)
  70. fixes to all-units test (details)
  71. Ensure CitationListType has at least one citation. (details)
  72. Changed `dependency` to use a ComplexType. (details)
  73. Rename test file. (details)
  74. Completed fields for semantic annotation. (details)
  75. Update namespace of etst cittion docs. (details)
  76. added units for issues #140, #115. renamed unitTypes for issues #285, (details)
  77. parentSI units are all in preferred spelling (details)
  78. Added to taxonomicClassificationType: an id on the (details)
  79. set taxonId@provider to anyURI. shortened examples and documentation (details)
  80. added units from issues #140, #151, corrected a few copy-paste errors. (details)
  81. unitTypeDefintions file updated with unit names from unitDictionary.xml (details)
  82. added example with new taxonId element, per issue #141 (details)
  83. taxonCov documentation fixed for species binomials, issue #250 (details)
  84. dateTime docs, per issue #268: updated examples, added notes on ISO (details)
  85. documentation: added note about species binomials. added examples to (details)
  86. Ignore .DS_Store files. (details)
  87. Reformat buildDependency.xsl for readability and indentation. (details)
  88. Fix dependency tree generation using new file locations. (details)
  89. Experiment with moving EML documentation into markdown files in docs. (details)
  90. Test using markdown for documentation. (details)
  91. Set theme jekyll-theme-slate (details)
  92. Remove docbook ancillary docs files, which are now in markdown format. (details)
  93. Move documentation into docs directory. (details)
  94. Update rules language and formatting. (details)
  95. Fix location of CSS file in new directory layout. (details)
  96. Moved references handling instructions to markdown format in docs. (details)
  97. Ignore jekyll _site directory. (details)
  98. add EML 2.2 changes document (details)
  99. Revise what's new after comparing against mob's ASM slides (details)
  100. Restructured README to present citation format. (details)
  101. Added Mitchell. (details)
  102. updated namespace at top level. noticed that some test files have stmml (details)
  103. stmml namespace updated in additionalMetadata also (details)
  104. adding a template to move appinfo to documentation (details)
  105. disambiguate literatureCited example (details)
  106. QUote elements to avoid build problems in html output. (details)
  107. Fix link to FLED to point at archive.org copy. (details)
  108. Initial structure for a Bookdown version of the EML spec. (details)
  109. Added bookdown configuration for citations. (details)
  110. Initial conversion of spec to markdown. (details)
  111. Fix typo in abstract. (details)
  112. Reformat list. (details)
  113. Add semantics module overview section. (details)
  114. Removed module description text from schemas. (details)
  115. Removed specification text from xsl. (details)
  116. Remove unneeded build stages now that docs are in markdown. (details)
  117. Remove docbook from the build and tests. (details)
  118. Remove accidentally committed config file. (details)
  119. adding eml-literature file to document new citation types (details)
  120. Clarified documentation on the packaeId attribute. (details)
  121. Remove erroneous default value for system attributes. (details)
  122. Rewrote validation section to be much clearer. (details)
  123. Rewrote validity and features sections, and renamed files. (details)
  124. Changed exmaples to use doi identifiers for clarity. (details)
  125. Rename validation chapter. (details)
  126. Rename chapters more consistently. (details)
  127. Update TOC links. (details)
  128. Incorporate eml-literature module into the eml-module.md. (details)
  129. Reorganize modules section into 4 chapters plus ancillary material. (details)
  130. Add Getting Started section. (details)
  131. replace referencesList with referencesHash (details)
  132. Spell Timothy Whiteaker correctly (details)
  133. add MeasurementType annotations to percent cover and biomass attributes (details)
  134. minor grammatical edits to eml-validation-refs (details)
  135. Fix filename typo in schema docs. (details)
  136. Changed annotation example to not reuse the packageId. (details)
  137. adding script to prep xsd files for generating documentation in Oxygen (details)
  138. adding the transformed files in a tmp dir (details)
  139. Update tests to detect invalid files. (details)
  140. Added test files for annotations. (details)
  141. First thoughts on an alternative validator for EML-specific rules. (details)
  142. Make validate() public. (details)
  143. Add packageId to the list of identifiers to be checked. (details)
  144. Start a new EMLValidator class to replace EMLParser. (details)
  145. Added new jar for the EMLValidator. (details)
  146. initial commit (details)
  147. add examples to /eml/annotations and /eml/additionalMetadata (details)
  148. add code sample to attribute annotation example (details)
  149. add example dataset annotation, fixed formatting (details)
  150. add draft of attribute annotation text (details)
  151. add documentation to attribute annotation section (details)
  152. edit headings, and attribute, entity, and introduction sections (details)
  153. describe containsMeasurementsOfType object property (details)
  154. edit attribute annotation text (details)
  155. add example for entity annotation (details)
  156. add entity-level annotation text (details)
  157. edit entity and attribute annotation sections (details)
  158. edit dataset section (details)
  159. add text to dataset section (details)
  160. add text to /eml/annotations section (details)
  161. add explanation of examples to /eml/annotations (details)
  162. Add the annotations primer to the gitbook. (details)
  163. add text to additionalMetadata section (details)
  164. add text to the additionalMetadata section (details)
  165. update text in the /eml/additionalMetadata section (details)
  166. add introduction to primer (details)
  167. add text to introduction (details)
  168. reorganize introduction (details)
  169. update semantics in EML 2.2.0 section (details)
  170. update headings and text (details)
  171. reorganize semantic annotations primer (details)
  172. update semantic annotation primer (details)
  173. updated semantic annotations primer (details)
  174. edited semantic annotations primer text (details)
  175. update examples (details)
  176. update generic examples (details)
  177. edit semantic annotations primer (details)
  178. update examples and text (details)
  179. add label information (details)
  180. Add label information (details)
  181. update semantic annotations primer (details)
  182. edited examples and text (details)
  183. edit annotation pattern examples (details)
  184. edit example explanations (details)
  185. add references to data property (details)
  186. add specific annotation example (details)
  187. edit dataset annotations section (details)
  188. proofreading edits (details)
  189. clarify explanations about subjects and ID values (details)
  190. edit example text (details)
  191. edit and add more examples (details)
  192. adding a script to build schema documentation using Oxygen (details)
  193. adding script to build documentation (details)
  194. edit code blocks highlighting (details)
  195. clarify use of additionalMetadata element (details)
  196. edit entity annotation section (details)
  197. add relative links (details)
  198. change dataset to top-level resource (details)
  199. edit headings and top-level resources section (details)
  200. edit top-level resource section (details)
  201. edit entity-level annotation section (details)
  202. update annotations text (details)
  203. edit attribute annotation text, remove pattern (details)
  204. edit annotations element section (details)
  205. edit additionalMetadata section (details)
  206. clean up text (details)
  207. edit introduction (details)
  208. edit annotations section (details)
  209. in example, ref to ITIS is the IRI (URL) (details)
  210. Fix minor issues with Oxygen doc build script (details)
  211. examples for taxonId are URIs (details)
  212. Update schema diagrams for 2.2.0 (details)
  213. updated unit enumeration (details)
  214. Add angle units to unit enumeration so validation works. (details)
  215. First pass at new EML Validator. (details)
  216. Reformat and document EMLValidator. (details)
  217. Moved EML module files to new subdirectory. (details)
  218. Remove whitespace in describes that caused validation error. (details)
  219. Fix XPath in validator to properly access all describes fields. (details)
  220. Reformat Servlet for consistency. (details)
  221. Got rid of EMLParser, replaced by EMLValidator. (details)
  222. Added getErrors() function to EMLValidator to return full lisst of (details)
  223. Refactored EMLParserServlet to use EMLValidator now. (details)
  224. Update travis with new location of sample file. (details)
  225. Restore the EMLParser, exceptions, and tests. (details)
  226. Clean up dead code and make tests work. (details)
  227. Reformat parser code for consistency with NCEAS style. (details)
  228. Begin refactoring EMLParser constructors. (details)
  229. Refactor EMLParsser to use EMLValidator. (details)
  230. Switch EMLValidator to using File param in constructor. (details)
  231. Add new EMLValidator constructor to work on String inputs. (details)
  232. When parsing a String using EMLParser, delegate to EMLValidator. (details)
  233. Deprecate EMLParser, use EMLValidator instead. (details)
  234. Added 2.2.0 to the namespaces config variable. (details)
  235. Add env to build for 2.2.0. (details)
  236. re-organized some text on primer: moved highights for each annot (details)
  237. edit text and formatting (details)
  238. edited section titles (details)
  239. Add the dataone maven repository. Change the utilities version from (details)
  240. Change the version of this project from 0.9.1-snapshot to 0.9.1. (details)
  241. added examples of what-not-to-do and logical consistency (details)
  242. adding example graphs and refs (details)
  243. headings have consistent levels; added more caveats (details)
  244. finished the table of triple components (details)
  245. paragraph describing what an RDF graph is (details)
  246. ok, had to fix spacing around pngs (details)
  247. fixed typos, minor format changes (details)
  248. add RDF/XML examples (details)
  249. fixed typo and formatting (details)
  250. add terms to glossary (details)
  251. add URL vs URI information (details)
  252. fixed RDF examples (details)
  253. updated primer, but Steven had also made revs (details)
  254. added the glossary terms again, fixed typo (details)
  255. fixed RDF examples (details)
  256. fixed formatting (details)
  257. some further revs to intro section (details)
  258. fixed example JRN URL to resolve more usefully (details)
  259. fixed JRN dataset URL again... (details)
  260. small fixes (details)
  261. changed predicate URI in first example (details)
  262. set subject (a jrn dataset) to pasta id. (details)
  263. added link to annotation primer (details)
  264. added @cboettig's ref on tidy and R (details)
  265. added more detail to the basic triple example (details)
  266. small revisions to intro wording (details)
  267. minor edits (details)
  268. condensed annotation explantations (details)
  269. edit eml/annotations section (details)
  270. edit eml/additionalMetadata section (details)
  271. removed semi-colons (details)
  272. try commit after Chong commits (details)
  273. grammar fix (details)
  274. fixed URI to resolve (details)
  275. removed namespace prefix (details)
  276. grammar (details)
  277. grammar (details)
  278. clarifying object property is a predicate (details)
  279. updated subject URI in initial example (details)
  280. changed eml/annotations example (details)
  281. added comments to intro (details)
  282. minor order change (details)
  283. add parens (details)
  284. introduced resource/property/value terms in intro (details)
  285. added terse note about JSON-LD vis-a-vis RDF (details)
  286. changed Example 4 (details)
  287. changed Examples 1 and 2, fixed typos (details)
  288. edit Logical Consistency section (details)
  289. edit RDF graphs section (details)
  290. edit RDF graphs section (details)
  291. fixed typos (details)
  292. removed table mapping triple to EML (details)
  293. minor edits to the intro (details)
  294. minor edits (details)
  295. shortened intro (details)
  296. minor changes (details)
  297. mark's edit (details)
  298. added small explanation about OWL (details)
  299. testing a footnote (details)
  300. footnote, maybe (details)
  301. added a group of questions to the FAQ. all pertain to the semantics (details)
  302. Update README. (details)
  303. Fix validation error due to duplicate id. (details)
  304. Add the class fields language, abstract and keywords. (details)
  305. Add the code to parse and store keywords, abstract and language. (details)
  306. Add test code for new fields. (details)
  307. Bump the version to 0.9.1 (details)
  308. Add the code to parse the userId in the party element. (details)
  309. Add the publisher and pubDate to the parser. (details)
  310. Bump the version to 0.9.2. (details)
  311. Fixed a typo on the word "abstract". The abstract is a keyword on the (details)
  312. reorganized major sections. TO DO: links from text to appendix (details)
  313. moved asterisks in links (details)
  314. moved anchor tags to above heading (details)
  315. moved from some more anchor tags. (details)
  316. cross-links between examples and their rdf graph (details)
  317. more cross refs (details)
  318. moved rdf for example 3 to the correct place. (details)
  319. extra asterisk removed (details)
  320. graph for example 3 lowered in hierarchy (details)
  321. a few leading spaces removed. (details)
  322. broke organization para (details)
  323. removed subheaders in intro (details)
  324. add to organization para (details)
  325. deleted extra glossary ref (details)
  326. links to example rdf in logical consistency sect. (details)
  327. checking for logical consistency section (details)
  328. turned simplest triple into a code block (details)
  329. Fix typos in README. (details)
  330. added Q:A answers about what is: "dereferencing", URI vs URL, and SKOS (details)
  331. Answered Q:A section about SKOS, RDFS, and an example using rdfs:label (details)
  332. answered questions about interpreting an RDF Graph, and if tools are (details)
  333. fine-tuned text on answer to "what does the RDF look like?" (details)
  334. small grammatical fix (details)
  335. removed extra newline and parentheses in intro (details)
  336. added comments (details)
  337. added comment and fixed misspelling (details)
  338. expanded acronyms (details)
  339. updated faq to use a schema.org "predicate" (details)
  340. Clarify use of resource titles and translations (details)
  341. Add support for id, system, and scope attribute on annotation elements (details)
  342. small addition to dereferencing text (details)
  343. small rewording about diff among URI/URL/URN (details)
  344. a few more minor grammatical edits (details)
  345. update contributors list (details)
  346. update citation (details)
  347. added simpler para 1; blended in para 2 (details)
  348. Update eml-semantic-annotations-primer.md (details)
  349. Update eml-semantic-annotations-primer.md (details)
  350. Update eml-semantic-annotations-primer.md (details)
  351. Fix whitespace problems with markdown headings in semantics primer. (details)
  352. task 5 done. started on 4 (example text) (details)
  353. few typos and whitespace (details)
  354. round out contact info for searl (details)
  355. Ignore project config files in git. (details)
  356. Update EML schemas to use new https-based namespace. (details)
  357. Add Oxygen docs to book and tweak the book build (details)
  358. Fix an issue with my approach to making index.html (details)
  359. restructured text for examples 2 and 3 (details)
  360. restructured text for examples 4 and 5 (details)
  361. entry for each of 8 vocabs in the examples. (details)
  362. fix typos and links (details)
  363. edit intro (details)
  364. fix links in intro (details)
  365. edit file name (details)
  366. edit 'Organization of this document' section (details)
  367. edit Semantic Annotations in EML 2.2.0 section (details)
  368. edit top-level resource section (details)
  369. edit example 3 (details)
  370. edit example 4 (details)
  371. edit example 5 (details)
  372. edit "semantic triples" and "URIs" section (details)
  373. edit URIs and RDF Graphs sections (details)
  374. put glossary terms in alphabetical order (details)
  375. edit glossary and example vocabs (details)
  376. edit example vocabs (details)
  377. add the FAQs from eml-faq (details)
  378. remove semantics content (details)
  379. fix Q's format and wording (details)
  380. edit FAQ, add link to FAQ (details)
  381. edit FAQ (details)
  382. add FAQ to doc organization; add vocab info (details)
  383. add definition of glossary terms (details)
  384. Update eml-semantic-annotation-primer.md (details)
  385. update semantic annotation primer file name (details)
  386. update document organization section; fix typos (details)
  387. linked text to FAQs. added one more FAQ (re measurements). added (details)
  388. edit URIs section (details)
  389. proofing and small revisions-- still working on this. (details)
  390. continuing with revisions to Sem Primer (details)
  391. saving changes thru line 100 (details)
  392. edits up to line 200 (details)
  393. edits up to line 267 (details)
  394. final changes for today (details)
  395. Try to fix Travis build by switching to Java to get ant installed. (details)
  396. Add ant to APT install in Travis. (details)
  397. Add ant-optional to the Travis build for JUnit support. (details)
  398. Have JUnit prinnt test log to console for easier debugging. (details)
  399. Increase memory to see if that is the StackOverflow error. (details)
  400. Try bionnic to get a newer version of ant than 1.96. (details)
  401. Try snaps rather than apt under bionic for package installs. (details)
  402. Switch to using apt install directly, and skip the maven build. (details)
  403. Try updating the apt sources before the install. (details)
  404. Switch back to xenial. (details)
  405. FIx target typo to 'before_install'. (details)
  406. Annd switch back to bionic now that apt is installing properly. (details)
  407. Add custom downloaded version of ant (1.10.6) instead of what comes with (details)
  408. Fix path to 1.10.6 download. (details)
  409. CHeck if ant exists, and if not then download it. (details)
  410. Add env var for Ant version to Travis. (details)
  411. Temporarily disable cache. (details)
  412. DOwnload Ant if the directory does NOT exist. (details)
  413. Try a larger stack size. (details)
  414. Cache busted? (details)
  415. Upgrade xerces and xalan to see if that fixes the StackOverflowErrors. (details)
  416. Pare back travis now that the xerces upgrade fixed the build. (details)
  417. modifications throughout, now up to line 383, "URI (details)
  418. modifications throughout, now up to 472 (details)
  419. up to 644 (details)
  420. finished full pass-thru edit of semantic annotation primer (details)
  421. minor edits to intro (details)
  422. minor edits to intro (details)
  423. superficial edits (details)
  424. more superficial edits (details)
  425. yet more superficial edits (details)
  426. updates to text, in light of warnings about `id`s in EML need to be (details)
  427. update Examples 1 and 4 (details)
  428. update examples with Eric Seabloom's info (details)
  429. make examples consistent (details)
  430. Force copy the index.html even if it exists. (details)
  431. Switch to using "dist" as the subdirectory for the built site and (details)
  432. Initial dist subtree commit (details)
  433. Add shell script for deploying the built site. (details)
  434. Move dist directory to top level. (details)
  435. Remove tmp directory from git tree. (details)
  436. Ignore the tmp dir in git. (details)
  437. Build schema docs directly into dist directory. (details)
  438. No longer need to copy the schema docs. (details)
  439. Deploy from the top level dist dir. (details)
  440. initial edits to glossary and FAQ. added glossary entries for jsonld and (details)
  441. Reformat for proper indentation. (details)
  442. Fix 2.2.0 namespace and add examples. (details)
  443. Regenerated schema docs with proper ns, and added to book. (details)
  444. Introduction only: ids in EML with link to new FAQ. added short section (details)
  445. replaced the extra paras after examples 1-3 with place holders to a FAQ (details)
  446. typos only (details)
  447. replaced people graph, correct person (details)
  448. Update 2.2.0 namespace in additional files. (details)
  449. editing annotation section to improve readability (details)
  450. set to false: detailsSource, detailsUsedBy, set to true: (details)
  451. Update schema doc html files with new configuration. (details)
  452. section headers and text for examples 3 and 4, per Stevan. (details)
  453. added an intro to grouped annotations per Stevan (details)
  454. editing the annotations primer (details)
  455. Fix spelling. (details)
  456. Updated instructions to build and deploy the website. (details)
  457. Renamed about file. (details)
  458. Fixed book filename and commandline switch. (details)
  459. Fix chapter link to file. (details)
  460. Added coverage section to sample with taxonId filed for validation test. (details)
  461. Updated contributors, added ORCIDs, cleaned README links. (details)
  462. Updated ORCID links. (details)
  463. Fix nav menu to remove extraneous link. (details)
  464. Update validator to use new schema namespace. (details)
  465. Edit the EML 2.2.0 changes document. (details)
  466. Updated book chapter on EML 2.2.0 changes. (details)
  467. Fix instructions for validation script. (details)
  468. Updated release notes with major features and bug listings. (details)
  469. Add shell script for getting the current list of GitHub issues for a (details)
  470. Fix bullet list formatting in sem primer. (details)
  471. fix glossary in primer (details)
  472. elevated the level glossary and list of vocabs. removed extra notes (details)
  473. rm the toc since bookdown makes one. adapted paragrath on organization (details)
  474. orphan text, extra linefeeds removed. (details)
  475. small changes to wording in appendix (details)
  476. moved FAQs to above appendix (details)
  477. one more ISO example, per issue #311 (details)
  478. added methods appinfo, per issue #330 (details)
  479. Add new images for each module. (details)
  480. Link to module images and diagrams in docs (details)
  481. Link to interactive schema documentation in readme (details)
  482. Rearrange chapters to have all modules in one chapter. (details)
  483. Move schema docs out of dist/schema and into docs/schema (details)
  484. Add newly generated schema images to built schema docs. (details)
  485. Copy source dirs into built book for proper linking. (details)
  486. Delete the contents of dist as this will now be a temporary staging (details)
  487. Update site build description. (details)
  488. Update the deploy script. (details)
  489. Remove unneeded status outputs from deploy script. (details)
  490. Add redirect config file for Netlify. (details)
  491. Rewrite the URL rather than redirect. (details)
  492. Streamline git clone and build for EML parser. (details)
  493. Ignore the release dir in commits. (details)
  494. FUrther streamline git copy for EML schemas. (details)
  495. Fix emlparser servlet by adding utilities.jar. (details)
  496. Fix the `dist` target to create the release files for distribution. (details)
  497. Added paragraph descrining need for missing value codes and code (details)
  498. Deprecated the eml-access module in the docs. (details)
  499. Updated language around contribution by maintainers. (details)
  500. Add a codemeta.json file and a bibtext citation. (details)
  501. Update context file to use codemeta as default. (details)
  502. fixed minor typos (details)
  503. Fixed typos, added section on deprecating EML access. (details)
  504. Make some minor copy edits (details)
  505. Remove the ant target call "docs" since the build.xml doesn't have it (details)
  506. Remove the duplicated methods set/getAbstract. (details)
  507. Bump the version of the datamanager jar file from 0.9.2 to 1.0.0. (details)
  508. New language for deprecation of access element. (details)
  509. Add more markdown documentation. (details)
  510. Update release target to include generated site. (details)
Commit 6c95904dd1c5c0d7ed123a6de3df1ea22f276559 by leinfelder
making branch for 0.9.x datamanager library
The file was modifiedpom.xml (diff)
The file was added.project
Commit 79b66ac29d5f9df62ea82f93148e95c46d2c8884 by gitcode
iMove schema files to xsd directory, and images to img directory.
The file was removedeml-physicalDistribution.png
The file was removedeml-protocol.xsd
The file was removedeml-software.png
The file was addedimg/eml-physicalDistribution.png
The file was removedeml-spatialRaster.xsd
The file was addedimg/eml-dataTable.png
The file was removedeml-physical.xsd
The file was removedeml-documentation.xsd
The file was removedeml-methods.png
The file was addedxsd/eml-spatialReference.xsd
The file was removedstmml.xsd
The file was addedimg/eml.png
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The file was removedeml-project.png
The file was addedimg/eml-methods.png
The file was removedeml-view.xsd
The file was removedeml-dataTable.png
The file was addedimg/eml-dataset.png
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The file was removedeml-access.xsd
The file was addedxsd/eml-methods.xsd
The file was addedxsd/eml-spatialRaster.xsd
The file was addedimg/eml-software.png
The file was addedxsd/eml-resource.xsd
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The file was addedimg/eml-view.png
The file was removedeml-attribute.xsd
The file was addedxsd/eml-protocol.xsd
The file was removedeml-attribute.png
The file was addedxsd/eml-party.xsd
The file was removedeml-literature.xsd
The file was addedimg/eml-entity.png
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The file was addedxsd/eml-constraint.xsd
The file was removedeml.xsd
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The file was addedimg/eml-project.png
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The file was addedimg/eml-literature.png
The file was addedxsd/eml-dataset.xsd
The file was addedxsd/eml-dataTable.xsd
The file was addedxsd/stmml.xsd
The file was addedimg/eml-resource.png
The file was removedeml-dataTable.xsd
The file was removedeml-party.xsd
The file was removedeml-storedProcedure.xsd
The file was removedeml-resource.png
The file was addedxsd/eml-literature.xsd
The file was addedxsd/eml-unitTypeDefinitions.xsd
The file was addedxsd/eml-physical.xsd
The file was addedimg/eml-access.png
The file was addedxsd/eml-access.xsd
The file was addedimg/eml-spatialReference.png
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The file was removedeml-text.png
The file was removedeml-coverage.xsd
The file was addedimg/eml-party.png
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The file was removedeml-software.xsd
The file was removedeml-dataset.png
The file was addedimg/eml-spatialRaster.png
The file was addedimg/eml-coverage.png
The file was removedeml-spatialVector.xsd
The file was removedeml-text.xsd
The file was addedimg/eml-protocol.png
The file was addedimg/eml-text.png
The file was removedeml-resource.xsd
The file was addedxsd/eml-storedProcedure.xsd
The file was addedxsd/eml-view.xsd
The file was removedeml-constraint.xsd
The file was addedxsd/eml-project.xsd
The file was removedeml-spatialReference.xsd
The file was addedxsd/eml-documentation.xsd
The file was addedimg/eml-storedProcedure.png
The file was removedeml.png
The file was addedxsd/eml-software.xsd
The file was addedxsd/eml-text.xsd
Commit ef773b33b9d2c8484e5fc8c5af49fe5f108e4016 by gitcode
Refactor build to switch to 2.2.0 version.
This includes fixes to docbook generation for the new xsd and img
directory structures, and updatting the
eml-spatialReferenceDictionary.xml to use the 2.2.0 namespace (partial
fix for issu #264).
The file was modifiedxsd/eml-view.xsd (diff)
The file was modifiedxsd/eml-protocol.xsd (diff)
The file was modifiedxsd/eml-constraint.xsd (diff)
The file was modifiedxsd/eml-entity.xsd (diff)
The file was modifiedREADME.md (diff)
The file was modifiedxsd/eml.xsd (diff)
The file was modifiedstyle/eml/eml.xsl (diff)
The file was modifiedxsd/eml-spatialReference.xsd (diff)
The file was modifiedeml-spatialReferenceDictionary.xml (diff)
The file was modifiedxsd/eml-access.xsd (diff)
The file was modifiedxsd/eml-spatialVector.xsd (diff)
The file was modifiedxsd/eml-party.xsd (diff)
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedxsd/eml-spatialRaster.xsd (diff)
The file was modifiedxsd/eml-dataTable.xsd (diff)
The file was modifiedxsd/eml-physical.xsd (diff)
The file was modifiedxsd/eml-documentation.xsd (diff)
The file was modifiedxsd/eml-attribute.xsd (diff)
The file was modifiedxsd/eml-project.xsd (diff)
The file was modifiedxsd/eml-storedProcedure.xsd (diff)
The file was modifiedbuildDocBook.xsl (diff)
The file was modifiedxsd/eml-dataset.xsd (diff)
The file was modifiedxsd/eml-software.xsd (diff)
The file was modifiedbuildDependencyTable.xsl (diff)
The file was modifiedbuild.xml (diff)
The file was modifiedxsd/eml-methods.xsd (diff)
The file was modifiedxsd/eml-coverage.xsd (diff)
The file was modifiedxsd/eml-literature.xsd (diff)
The file was modifiedeml-documentation.xsl (diff)
The file was modifiedxsd/eml-text.xsd (diff)
The file was modifiedxsd/eml-unitTypeDefinitions.xsd (diff)
Commit 62b60f9f755dd118a3f20029c816c5baf52c78ce by petridish
Change usage of personnel to individuals
Because the word personnel connotes employment at an organization, I
think a more inclusive term should be used. This is related to expanding
the the document of userId/directory for web identifiers such as ORCID
in #260.
The file was modifiedeml-party.xsd (diff)
The file was modifiedeml-party.xsd (diff)
Commit 03f42d02767f36aa021c42104c58767d9caefde8 by petridish
Add ORCID to the examples for userid/directory
Addresses #260
The file was modifiedeml-party.xsd (diff)
Commit dedd0d0f60aedf5295cb3ff00bfff2a5d0db41f4 by gitcode
Removing unneeded perl script for stripping annotations.
Use the more effective XSLT instead.
The file was removedremoveAnnotation.pl
Commit 746d46d6f88431ddb09a091f4a1f9e5b09043845 by gitcode
Move removeAnnotation.xsl into the style directory.
The file was removedremoveAnnotation.xsl
The file was addedstyle/removeAnnotation.xsl
The file was modifiedbuild.xml (diff)
Commit 676d5a5a29ce4398c07e2e2715905492c88062fc by gitcode
Converted members.xml to Markdown format (members.md).
The file was modifiedbuild.xml (diff)
The file was addedmembers.md
The file was modifiedindex.html (diff)
The file was removedmembers.xml
The file was removedmembers.xsl
The file was modifiedeml-faq.xml (diff)
Commit 1dacda89507c344a4e26c27b0f9d7df30b3ab21e by gitcode
First draft of an eml-semantics module.
Still needs to be incorporated into other elements within EML.
The file was addedxsd/eml-semantics.xsd
Commit 9179ed04ead6a77dd4603474a0a936d1c2674ade by noreply
Fix markdown syntax on members table.
The file was modifiedmembers.md (diff)
Commit 2c589cee5bf595144ebec4dcd467fe2cecd67149 by gitcode
Remove extraneous attributes, and unneeded `choice`.
The `SemanticAnnotation` type was difined as a sequence nested inside of
a choice, which was not needed. See issue #25.
The file was modifiedxsd/eml-semantics.xsd (diff)
Commit 8376bd10aa6865ea92ff16441c2e06173c7c7e56 by gitcode
Added `annotation` fields for attribute, EntityGroup, and ResourceGroup.
Continuing work on issue #25, added in fields of type
sem:SemanticAnnotation in three key schemas.
The file was modifiedxsd/eml-semantics.xsd (diff)
The file was modifiedxsd/eml-attribute.xsd (diff)
The file was modifiedxsd/eml-entity.xsd (diff)
The file was modifiedxsd/eml-resource.xsd (diff)
Commit 8c0b3455c3442fe48d7b24cc673411b3fd21d8bb by gitcode
Added annotation fields to example document.
Continuing work on issue #25, this commit now allows the new annotation
fields to be demonstrated. The eml-sample.xml document validates using
xerces.
The file was modifiedsrc/test/resources/eml-sample.xml (diff)
Commit be79f1a97e805b6585ae0c210e017b12bd0dac19 by gitcode
Rename `gradient` to `grad`s.
This is to follow the change in unit names that was made years ago, and
has been a latent bug in the file since then.  This fix closes #264.
The file was modifiedeml-spatialReferenceDictionary.xml (diff)
Commit e738422cdd78caf3d8e8b253c94f75021fe07889 by gitcode
Added 'unknown' to the maintainence frequency list to fix spelling
error.
The original misspelled value was kept for compatibility.  This will
close issue #267.
The file was modifiedxsd/eml-dataset.xsd (diff)
Commit 393f859214f80cd279be3ef54398783ae13958ca by gitcode
Added modern packageId examples (DOI, UUID) to docs.
The file was modifiedxsd/eml.xsd (diff)
Commit ac5d9d2f6ed3b74903a9fbc785a4f441b2be8828 by gitcode
Add notice about release statis of 2.2.0.
The file was modifiedREADME.md (diff)
Commit 772a0964eb62c9fd2baf5518777395a013b6dca3 by gitcode
Added `award` field.
Added first version of a new `award` field to the eml-project schema to
add info that can be used to reference funding information for the
projet.  This provides the first implementation of the `award` field,
including the award title, identifier, and open funder registry
identifier. These proposed additions are partial implementations for
issue #266.
The file was addedother/registry.rdf
The file was modifiedxsd/eml-project.xsd (diff)
Commit a31aec1f213aba9776dc3033552aaa7a8a46c659 by gitcode
Updated documentation for award fields.
The file was modifiedxsd/eml-project.xsd (diff)
Commit 751e1869df64aa5e7305c15314d806e99245eb58 by gitcode
Switch sample doc to use 2.2.0 namespace.
Document validates.
The file was modifiedlib/sample/eml-sample.xml (diff)
Commit 5ce01c94ed5298f6fee8b7f4beb4e33c6b7c1ea8 by gitcode
Add 'award' element as part of sample.xml as an example.
The file was modifiedlib/sample/eml-sample.xml (diff)
Commit c32cbe942ed17bca2e80bb4d6ee874af84967532 by gitcode
Adjusted documentation on the 'purpose' field to indicate that it is
used to provide a data synopsis as needed.
The file was modifiedxsd/eml-dataset.xsd (diff)
Commit 063bda9edf38d0dd1de3adfb496ce5801a502bf9 by gitcode
renamed citation to usageCitation to reflect comments in issue #259.
Also updated the definition to reflect the intended purpose of the
field.
The file was modifiedxsd/eml-dataset.xsd (diff)
Commit 002921b709d6a300cb47399f7c788e990ee808cb by petridish
Fix outdated references to SVN and listserv
The file was modifiedindex.html (diff)
The file was modifiedeml-faq.xml (diff)
Commit 7ae63c78cd363840a8d1e4520bac590f29051e86 by petridish
Fix XML syntax errors in internationalization example
The file was modifiedbuildDocBook.xsl (diff)
Commit b3efd4192dd5f9421abdbf0b3251fcfa83abc7d5 by petridish
Fix invalid lang codes in internationalization example
The file was modifiedbuildDocBook.xsl (diff)
Commit 20bdb1a5720178026651c025b90838992e712f43 by gitcode
Added task board to README.
The file was modifiedREADME.md (diff)
The file was added.travis.yaml
Commit a2ec122a1d4f3b17feb092e9574f363b0a674110 by gitcode
Switch travis to language generic to avoid ruby build.
The file was added.travis.yml
The file was removed.travis.yaml
The file was modifiedREADME.md (diff)
Commit 1ff36182cda5a0530ada6e9c0095c2a967e81b1d by gitcode
Standardize protocol namespace to 'pro'.
Closes #230.
The file was modifiedxsd/eml.xsd (diff)
The file was modifiedeml-documentation.xsl (diff)
Commit f24b8780b5418e56dc452be391f76216b280a53c by gitcode
Modified build to allow building docs offline.
Previous docs made references to DTD files on OASIS servers. Removed so
that the build can work offline.  DTD DOCTYPE references seem
superfluous for our purposes.
The file was modifiedeml-211info.xml (diff)
The file was modifiedbuildDocBook.xsl (diff)
The file was modifiedeml-faq.xml (diff)
The file was modifiedsortDocBook.xsl (diff)
The file was modifiedeml-210info.xml (diff)
Commit d1a8c74ed9c4baa5a7da3c4cd0d4d01520f10e94 by gitcode
Add new elements for propertyURI and propertyLabel.
Also, rename the termURI to valueURI, to reflect its use as the value of
a property.
The file was modifiedxsd/eml-attribute.xsd (diff)
The file was modifiedxsd/eml-semantics.xsd (diff)
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedxsd/eml-entity.xsd (diff)
Commit ffba2d9cb7b33333ff31d3a594f5c5ba1683c643 by gitcode
Added EML semantics example document.
The file was addedsrc/test/resources/eml-semantics.xml
Commit 083d6d1f210c60bfbf4cc1fae6dec08bcc46f588 by gitcode
Added more complete annotation example.
The file was modifiedsrc/test/resources/eml-sample.xml (diff)
Commit 591af29329bb2bc5b0f38731a1fab7c7526015ad by gitcode
Improved documentation for personnel element.
Reference issue #281.
The file was modifiedxsd/eml-project.xsd (diff)
Commit 2979d5ccf2ef4109ab830a505e5565709deb10b0 by gitcode
Add a local copy of xml.xsd.
The version 2.1.1 internationalization changes introduced the need for
adding the xml.xsd file to support `xml:lang` attributes on
internationalized text strings.  However, the schema import pointed at a
network location of the schema file, which prevents validation when
offline.  Adding xml.xsd to the schema dir and referencing the local
copy allows offline validation to succeed and prevents injection attacks
on the remote schema file.  Need to verify that this is the right
version of xml.xsd.
The file was modifiedxsd/eml-text.xsd (diff)
The file was addedxsd/xml.xsd
The file was modifiedxsd/eml.xsd (diff)
The file was modifiedxsd/eml-resource.xsd (diff)
Commit eb4ed60f96ed8ce563406816ef1ccbb568b81a2e by gitcode
Use EML-style camel case field names for `AwardType`.
Also, add an example of the new `award` element.
The file was modifiedsrc/test/resources/eml-sample.xml (diff)
The file was modifiedxsd/eml-project.xsd (diff)
Commit 869ebdfcc52da82829f5304cec550b9f6a852596 by gitcode
Fixed spelling in members file.
The file was modifiedmembers.md (diff)
Commit aca06e62771eabc7d44c0b6618068b1a409a63dc by gitcode
Modified docbook and test resources to validate and pass tests.
The file was modifiedsrc/test/resources/eml-text.xml (diff)
The file was modifiedsrc/test/resources/eml-spatialVector.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithAccessOverride.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetMultipleDistribution.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithCitation.xml (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
The file was modifiedsrc/test/resources/eml-dataset.xml (diff)
The file was modifiedsrc/test/resources/eml-physical.xml (diff)
The file was modifiedsrc/test/resources/eml-inline.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithAccessUnitsLiteralLayout.xml (diff)
The file was modifiedsortDocBook.xsl (diff)
The file was modifiedsrc/test/resources/eml-datasetWhitespacePatterns.xml (diff)
The file was modifiedsrc/test/resources/eml-method.xml (diff)
The file was modifiedsrc/test/resources/eml-entity.xml (diff)
The file was modifiedsrc/test/resources/eml-literatureInPress.xml (diff)
The file was modifiedbuildDocBook.xsl (diff)
The file was modifiedsrc/test/resources/eml-storedProcedure.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithAttributelevelMethods.xml (diff)
The file was modifiedsrc/test/resources/eml-unitDictionary.xml (diff)
The file was modifiedsrc/test/resources/eml-party.xml (diff)
The file was modifiedsrc/test/resources/eml-attribute.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithAccess.xml (diff)
The file was modifiedsrc/test/resources/eml-literature.xml (diff)
The file was modifiedsrc/test/resources/eml-i18n.xml (diff)
The file was modifiedsrc/test/resources/eml.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithNonwordCharacters.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetWithUnits.xml (diff)
The file was modifiedsrc/test/resources/eml-access.xml (diff)
The file was modifiedsrc/test/resources/eml-softwareWithAcessDistribution.xml (diff)
The file was modifiedsrc/test/resources/eml-semantics.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetGRing.xml (diff)
The file was modifiedsrc/test/resources/eml-software.xml (diff)
The file was modifiedsrc/test/resources/eml-view.xml (diff)
The file was modifiedsrc/test/resources/eml-physical-inline.xml (diff)
The file was modifiedsrc/test/resources/eml-project.xml (diff)
The file was modifiedsrc/test/resources/eml-citationWithContactReference.xml (diff)
The file was modifiedsrc/test/resources/eml-datasetGringpoint.xml (diff)
The file was modifiedsrc/test/resources/eml-protocol.xml (diff)
The file was modifiedsrc/test/resources/eml-offline.xml (diff)
The file was modifiedsrc/test/resources/eml-physical-inline-cdatasection.xml (diff)
The file was modifiedsrc/test/resources/eml-dataTable.xml (diff)
The file was modifiedsrc/test/resources/eml-citationWithContact.xml (diff)
The file was modifiedsrc/test/resources/eml-sample.xml (diff)
Commit c54463f60330fa601e0e446000aa09387fc1a75d by gitcode
Update eml-party test example with ORCID.
The file was modifiedsrc/test/resources/eml-party.xml (diff)
Commit a4572f0605b350dc51cee1369ff66e03e8b6b352 by gitcode
Initial pass at introduction, acknowledgements, and gettingStarted
sections.
All sections are of type TextType, which still needs to be modified to
support Markdown syntax.
The file was addedsrc/test/resources/eml-data-paper.xml
The file was modifiedxsd/eml-dataset.xsd (diff)
Commit d49a7a72c5c622e4cef360184cfab11756207768 by gitcode
Rebuilt eml.jar for 2.2.0 support.
The file was modifiedlib/eml.jar (diff)
Commit 54c7cd797dd3310630c197160e2882a4526c1be1 by gitcode
Drafted new fields for data paper support.
This includes a new `markdown` element in `txt:TextType` to support
Github flavored markdown.  And new elements for an introduction,
gettingStarted, and acknowledgements.  See issue #269 and #275.
The file was modifiedxsd/eml-text.xsd (diff)
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit ef747dff61f39f1f122e321ae9572fac47f54f73 by gitcode
Make the `award` element valid in the sample EML document.
The file was modifiedlib/sample/eml-sample.xml (diff)
Commit 781d24eaa7dc8d2a5b3189a0bd4b46d1a0de5b3e by gitcode
Add the semantics module to the doc generator.
The file was modifiedeml-documentation.xsl (diff)
Commit 2f72c4f51e09610a6e416f56b8959095b8dc40c3 by gitcode
Add link to GFM in example markdown.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit c70fcf0061e5eef7b9fb8bba21df17bda5bb0c13 by gitcode
Improve markdown documentation.
Include desciptions of indenting, CDATA, and how image links are handled
relative to EML.
The file was modifiedxsd/eml-text.xsd (diff)
Commit a401c6cf6a5bae1fa0fadfe7227ae09dd5f0c983 by gitcode
Check if the ant tests work in Travis.
The file was modified.travis.yml (diff)
Commit c37b67b35e2d55edf4d7f55a43a4ed1a9f7beb6a by mob
added an abstract containing a sample equation eml-data-paper.xml
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit de214f33c90dff86b750f8c99f83b02a61647c02 by gitcode
changed replaced -> augmented
The file was modifiedxsd/eml-project.xsd (diff)
Commit 733a650e43d4d31ca6ed04d71e1326687209a79b by gitcode
Changed `propertyURI` and label to optional.
Added documentation to indicate that, when propertyURI is not provided,
then the property defaults to dc:subject for resources and entities, and
to oboe:MeasurementType for attributes.
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedxsd/eml-entity.xsd (diff)
The file was modifiedxsd/eml-semantics.xsd (diff)
The file was modifiedxsd/eml-attribute.xsd (diff)
Commit 5b5d47f2e1f02b55e8d05718c26f56fc3a973e9b by gitcode
Add machine-readable license element.
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit 491b715961cf7ffe931fce3237bfc6ccdff58687 by gitcode
Rename license element to avoid conflict.
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
The file was modifiedxsd/eml-text.xsd (diff)
Commit 0ef141f327369d73f487fa269441209d946c2dc0 by margaret.obrien
1) stmml.xsd with two new attributes for a unit: deprecatedInFavorOf and
udunitsSynomym. 2) Version 1 of an eml-unitDictionary.xml that uses the
new unit attribues.
The file was modifiedeml-unitDictionary.xml (diff)
The file was modifiedxsd/stmml.xsd (diff)
Commit d3a8990074b24ee94d2ee688db9172165271b4e1 by mmaier
Revert to eml-unitDictionary.xml to
82dd0dd4178e27097f15813bb2c4d15f526e814b
The file was modifiedeml-unitDictionary.xml (diff)
Commit 526c28560e83e6d1f93752cd830eaccef947974a by mmaier
add deprecatedInFavorOf information
The file was modifiedeml-unitDictionary.xml (diff)
Commit 7d0ae428b15aafe05c2a8ecbaeda5fefce8fb5dc by gitcode
Further fleshed out sections in example data paper.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit 3beb10b2850fccf66789253041563d53a4ccbecf by gitcode
Added support for new citation formats, fields, and inline citations.
These include a new ability to use Bibtex citation format both within
the `citation` element, and within a new `bibtex` element, to create
lists of refs using these in a literatureCited element (#300), as well
as in usageCitation (#259), and referencePublication (#277) elements.
All of this helps support data papers (#269), for which pandoc-style
citation keys can be used to cite these references in the text of
Markdown blocks in the EML document.  Added these features as
demonstrations in the eml-data-paper.xml sample document.
The file was modifiedxsd/eml-literature.xsd (diff)
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
The file was modifiedxsd/eml-dataset.xsd (diff)
The file was modifiedxsd/eml-text.xsd (diff)
Commit 1e07fe90a6d9755acfdbfa85606cfe5ec4cf689d by gitcode
Fix validation error on schema location for data paper sample doc.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
Commit 793afde6d93b64473afef65bff480ba471aad9f4 by gitcode
Check that Travis build fails when tests fail or error.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
The file was modifiedbuild.xml (diff)
Commit af2726554432c93fcf6fb90b5f402b6a4896004b by gitcode
Fix data paper sample so that it validates.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
The file was modifiedeml-unitDictionary.xml (diff)
Commit 864e59e0e0b3854da02ffa4851b00b97ade9881f by mmaier
udunitSynonym for all units
The file was modifiedeml-unitDictionary.xml (diff)
Commit 05bf32bc20e375bf951e876db20d8347a20e0870 by mmaier
Test file with all 2.1.1 units
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Commit ed0d5dacc8f89784e66b6ab907987f89bb7ab05f by mmaier
Schema location change
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Commit 77fc07f42a8e57625affaeaff04db83008ba2d2c by margaret.obrien
set the namespace for stmml-1.2 in the root element. added a missing
multiplierToParentSI
The file was modifiedeml-unitDictionary.xml (diff)
Commit 0a22907f1b3cca80d5b3b7b95ff697c2095d7b2c by mmaier
fixes to all-units test
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Commit 595f1dc062e62d0b15aadda4d120ea899eac96a7 by gitcode
Ensure CitationListType has at least one citation.
The file was modifiedxsd/eml-literature.xsd (diff)
Commit 07b449808b7ed5b7eb9aed7f56a0eea23e8f13d5 by gitcode
Changed `dependency` to use a ComplexType.
Removed use of `ref` to a global element.  Details in issue #305.
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The file was modifiedxsd/eml-software.xsd (diff)
The file was addedsrc/test/resources/eml-software-dependency.xml
The file was removedsrc/test/resources/eml-software-220.xml
Commit 3a751d007d29f514f7f93b89f954c9c3e2947200 by gitcode
Completed fields for semantic annotation.
See discssion in issue #25.
The file was modifiedsrc/test/resources/eml-data-paper.xml (diff)
The file was modifiedsrc/test/resources/eml-sample.xml (diff)
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The file was modifiedsrc/test/resources/eml-semantics.xml (diff)
The file was modifiedxsd/eml.xsd (diff)
Commit c494365efd777f6a3f6021b72f3eda114307ea69 by gitcode
Update namespace of etst cittion docs.
Work towards #304.
The file was modifiedsrc/test/resources/citation-sbclter-bibliography.285.xml (diff)
The file was modifiedsrc/test/resources/citation-sbclter-bibliography.284.xml (diff)
The file was modifiedsrc/test/resources/citation-sbclter-bibliography.201.xml (diff)
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Commit 394bb9432cba46cc54497e101d9db054d76ea205 by margaret.obrien
added units for issues #140, #115. renamed unitTypes for issues #285,
#285
The file was modifiedeml-unitDictionary.xml (diff)
Commit b18bb244ced0022a890b311911bd74396aea9c1a by margaret.obrien
parentSI units are all in preferred spelling
The file was modifiedeml-unitDictionary.xml (diff)
Commit d2a63db10662b8e30618199db60f6dcc55033aee by margaret.obrien
Added to taxonomicClassificationType: an id on the
taxonomicClassification; new child element with attribute "provider".
Added basic documentation
The file was modifiedxsd/eml-coverage.xsd (diff)
Commit 7bab17ba92658b30b20381225204ba226d2c1b91 by margaret.obrien
set taxonId@provider to anyURI. shortened examples and documentation
The file was modifiedxsd/eml-coverage.xsd (diff)
Commit b65bc48801ea9cd87c3cdcd7cd6a6548a952cff0 by margaret.obrien
added units from issues #140, #151, corrected a few copy-paste errors.
Updated many definitions (based on wikipedia info)
The file was modifiedeml-unitDictionary.xml (diff)
Commit 9cc4595e186eebe54f21cfd9a1b3fdcfd3243bd9 by margaret.obrien
unitTypeDefintions file updated with unit names from unitDictionary.xml
The file was modifiedxsd/eml-unitTypeDefinitions.xsd (diff)
Commit 3dd83f8dab05bfbea8388e85264a1791bf5e7680 by margaret.obrien
added example with new taxonId element, per issue #141
The file was modifiedsrc/test/resources/eml-i18n.xml (diff)
Commit 89855dda41130afc6b80b43e74413fd10ddc0ef6 by margaret.obrien
taxonCov documentation fixed for species binomials, issue #250
The file was modifiedxsd/eml-coverage.xsd (diff)
Commit 2b524be958604e35f174708547e47e82c4dc3751 by margaret.obrien
dateTime docs, per issue #268: updated examples, added notes on ISO
rules
The file was modifiedxsd/eml-attribute.xsd (diff)
Commit 01db92026f6b153ea8d85da8093286d8d6129a2c by margaret.obrien
documentation: added note about species binomials. added examples to
taxonId
The file was modifiedxsd/eml-coverage.xsd (diff)
Commit 0d8ff0952cf98f07cfc973a0335612d07a00f745 by gitcode
Ignore .DS_Store files.
The file was modified.gitignore (diff)
Commit 49736569989c550bb9daf1cf31253042ca394e33 by gitcode
Reformat buildDependency.xsl for readability and indentation.
The file was modifiedbuildDependencyTable.xsl (diff)
Commit c76944be288a142b2ee08360626fed170ac97588 by gitcode
Fix dependency tree generation using new file locations.
Previously, the xsl file did not manage the change to using the xsd
directory location.  Now it does.
The file was modifiedbuildDependencyTable.xsl (diff)
Commit 5c4635c14dae8db20ef9c571125d39bf09e26955 by gitcode
Experiment with moving EML documentation into markdown files in docs.
The file was addeddocs/eml-211info.md
The file was modifiedbuild.xml (diff)
The file was addeddocs/eml-faq.md
The file was addeddocs/eml-210info.md
The file was addeddocs/index.md
Commit af13811b0fec38fc7381ad48f98422feb8ee9860 by gitcode
Test using markdown for documentation.
The file was removeddocs/index.md
The file was removedindex.html
The file was addedindex.md
Commit 199790442aa9073f8296254df5a44ab7962a6dfd by gitcode
Set theme jekyll-theme-slate
The file was added_config.yml
Commit 504460c5227d041305fe0e1f0bd581141ade09de by gitcode
Remove docbook ancillary docs files, which are now in markdown format.
The file was removedeml-210info.xml
The file was removedeml-faq.xml
The file was removedeml-211info.xml
Commit 7b937da111a7879e0615eab0f0da1bbbbe87be3f by gitcode
Move documentation into docs directory.
The file was removedmembers.md
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The file was modifiedREADME.md (diff)
The file was removedindex.md
The file was addeddocs/index.md
The file was removedeml-dublinCore.html
The file was addeddocs/members.md
Commit 245d5f3da16009e69332402d50c55f26deaa1f35 by gitcode
Update rules language and formatting.
The file was modifiedbuildDocBook.xsl (diff)
Commit 2d0ebdcdbcf15dc47aaa27e0d6dea83d5ca2b23d by gitcode
Fix location of CSS file in new directory layout.
The file was modifiedeml-documentation.xsl (diff)
Commit 61812a495949ff5d003e40a47f0c7986af881e6d by gitcode
Moved references handling instructions to markdown format in docs.
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Commit 0e540f7e0ec3430277f9a6aaf785f568f58dacca by gitcode
Ignore jekyll _site directory.
The file was modified.gitignore (diff)
Commit 9fda978eee836ab2203e7000dd22a5c74d57b5a7 by gitcode
add EML 2.2 changes document
See issue #308
The file was addeddocs/eml-220info.md
Commit c2b1d2f45ee5072204253380bb0f26a3193cf5ed by gitcode
Revise what's new after comparing against mob's ASM slides
The file was modifieddocs/eml-220info.md (diff)
Commit c5f9cc738f87b6264865a0e2bc9e10b657bcdb4c by gitcode
Restructured README to present citation format.
Also added new contributors, restructured the document order, and
rewrote the abstract.
The file was modifiedREADME.md (diff)
The file was modifiedREADME.md (diff)
Commit f5819655746555da4f2d41bda122dea729b236e2 by mob
updated namespace at top level. noticed that some test files have stmml
namespace in additional metadata also. to do
The file was addedstyle/eml211to220.xsl
Commit 0ff9afe996248c9beeec26d2f54c723ec36407ac by margaret.obrien
stmml namespace updated in additionalMetadata also
The file was modifiedstyle/eml211to220.xsl (diff)
Commit cfe1b405474fa45c749c5be6423cb0cd9d218ead by mob
adding a template to move appinfo to documentation
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Commit 74f29b536e7a79e92833fec55e4156bb7d86abb6 by gitcode
disambiguate literatureCited example
Fixes #318
The file was modifieddocs/eml-220info.md (diff)
Commit 77050db71954849169cdb205f3712c3501e69923 by gitcode
QUote elements to avoid build problems in html output.
The file was modifiedREADME.md (diff)
Commit b284202b6f61866f6cc0bfdc98711522de6af5a4 by gitcode
Fix link to FLED to point at archive.org copy.
The file was modifiedREADME.md (diff)
Commit 782c8ad72a17a6b74d20144eb8e11d6164a27e73 by gitcode
Initial structure for a Bookdown version of the EML spec.
More work to be done to convert the old docbook structure to markdown.
See issue #321.
The file was addeddocs/index.Rmd
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The file was addeddocs/emldocs.Rproj
The file was modifiedREADME.md (diff)
The file was addeddocs/release-notes.md
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The file was modified.gitignore (diff)
The file was addeddocs/_output.yml
Commit ef1f73d7b792cc4a18acaaf773b20fe4bd0f15d5 by gitcode
Added bookdown configuration for citations.
The file was addeddocs/about-this-book.md
The file was addeddocs/_bookdown.yml
The file was modifieddocs/index.Rmd (diff)
The file was addeddocs/references.md
Commit ce9653468316034afe3dd58226d4943ce33cc31e by gitcode
Initial conversion of spec to markdown.
Lots of reorganization remaining.
The file was addeddocs/ch2-spec-overview.md
The file was modifieddocs/_bookdown.yml (diff)
The file was addeddocs/ch1-spec-preface.md
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Commit 15cad4cb601d3df9472049238149ff6c9893fdc8 by gitcode
Fix typo in abstract.
The file was modifiedREADME.md (diff)
The file was modifieddocs/ch3-spec-architecture.md (diff)
Commit f5ef47f7b00578bfad2218cbd4216884ae092014 by gitcode
Add semantics module overview section.
Stubbed from the schema. Needs extension.
The file was modifieddocs/ch2-spec-overview.md (diff)
Commit 4ca6efd8446899206b973e2c1c8bcf1dcd3ae840 by gitcode
Removed module description text from schemas.
This text is now in the specification document in "docs".
The file was modifiedxsd/eml-dataTable.xsd (diff)
The file was modifiedxsd/eml-storedProcedure.xsd (diff)
The file was modifiedxsd/eml-unitTypeDefinitions.xsd (diff)
The file was modifiedxsd/eml-semantics.xsd (diff)
The file was modifiedxsd/eml-resource.xsd (diff)
The file was modifiedxsd/eml-text.xsd (diff)
The file was modifiedxsd/eml-protocol.xsd (diff)
The file was modifiedxsd/eml-literature.xsd (diff)
The file was modifiedxsd/eml-spatialVector.xsd (diff)
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The file was modifiedxsd/eml-view.xsd (diff)
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The file was modifiedxsd/eml-project.xsd (diff)
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The file was modifiedxsd/eml-party.xsd (diff)
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The file was modifiedxsd/eml-spatialReference.xsd (diff)
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The file was modifiedxsd/eml-dataset.xsd (diff)
The file was modifiedxsd/eml-physical.xsd (diff)
Commit 48b330a91657e3b8e0c6f3d3eab0ded986333a48 by gitcode
Removed specification text from xsl.
This text is now in the docs directory in markdown.
The file was modifiedbuildDocBook.xsl (diff)
Commit ec604a4c5eafdecf5e37402c04cb13b47ffbf7e3 by gitcode
Remove unneeded build stages now that docs are in markdown.
The file was modifiedbuild.xml (diff)
Commit 94d25b3d0120fd1ed6332e1359f07acb1e71f1ed by gitcode
Remove docbook from the build and tests.
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Commit 5cc1ecb3ab08a962e947f8266a98791ab8378c45 by gitcode
Remove accidentally committed config file.
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Commit 66e7e33d50463fb86bb741ebb996ca0fc2a272e7 by stevan.earl
adding eml-literature file to document new citation types
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Commit c2f7f0ec6882cce343d52b6ffefc1025d1d2d4e7 by gitcode
Clarified documentation on the packaeId attribute.
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Commit ea2acf7eb62e57528be231dc15d0685ffc595e48 by gitcode
Remove erroneous default value for system attributes.
Older eml documents may have set this explicitly, but the lack of sa
default should not cause any compatibility issues.
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Commit 7360165e7e9327e6c3a03e9c7e168f5de3def28b by gitcode
Rewrote validation section to be much clearer.
Also provided a pseudo-code example of validation logic, as requested in
issue #306.
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Commit be0bf2df784f2e6b27b19fbf754b2cf21a0f94f1 by gitcode
Rewrote validity and features sections, and renamed files.
Also updated section headings to be clearer.
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Commit 35cec8af81bfba7a49792273debbef41143d5e41 by gitcode
Changed exmaples to use doi identifiers for clarity.
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Commit b164dde8e09d4680e814cf33ce363aa61b52e98d by gitcode
Rename validation chapter.
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Commit 77f60e46a9ff1f761549ab6e0b936bfa823a4387 by gitcode
Rename chapters more consistently.
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Commit 7bca396cf32d1dbe62a9853ed97eaff1b69ea856 by gitcode
Incorporate eml-literature module into the eml-module.md.
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Commit 3b4a70d0128bdedd71c5a13804b1fd0af666c97a by gitcode
Reorganize modules section into 4 chapters plus ancillary material.
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Commit 0b372148dc952c3c4c3b4eb8dd1f24a5cf1fb70c by gitcode
Add Getting Started section.
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Commit 9adbcd083735235fb09b30fa4ee3929a8ac12f29 by noreply
replace referencesList with referencesHash
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Commit b661eea5f0af874c64dfaf372e1df6f9969d427b by gitcode
Spell Timothy Whiteaker correctly
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Commit 6c0da2874e96601bd440ed2c3de4fc59bf0414f5 by ssfchong
add MeasurementType annotations to percent cover and biomass attributes
Added the measurement type semantic annotations to the 'percent cover'
(att.4) and 'biomass' (att.12) attributes.
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Commit c99d23b522770fb2fed7bed1172b07c36f38091d by stevan.earl
minor grammatical edits to eml-validation-refs
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Commit 8cacf06572ad3490bc6a07c8e4b7f3a4dcab7b96 by gitcode
Fix filename typo in schema docs.
Fixes #326.
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Commit 3c7d8e341bf8a428b2f80bab28454f56eaa31ba2 by gitcode
Changed annotation example to not reuse the packageId.
Now the dataset has a different ID than the package, and I added
annotation examples pointing at each.
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Commit 131dc542cb0133438b1d5d04557213f513c76249 by mob
adding script to prep xsd files for generating documentation in Oxygen
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Commit cb64fe0ba868075fb8c000a518a05623206c3345 by margaret.obrien
adding the transformed files in a tmp dir
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Commit d44c143f0c44420ea1dab2d4fb2b7d0037c62be0 by gitcode
Update tests to detect invalid files.
Also add annotation tests for invalid files. Related to issue #328.
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Commit a7cc50c457f61a08f6b76a3281b8923cf79158a5 by gitcode
Added test files for annotations.
These tests are not passing, because they illustrate issues that the EML
parser  should deal with with annotation references but currently does
not handle.
The file was modifiedlib/eml.jar (diff)
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Commit 41722e373ff01297410f42930f339159e067ed0c by gitcode
First thoughts on an alternative validator for EML-specific rules.
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Commit d6c9464fd81c51b0bcb96352a892ac1e4ea3c53c by gitcode
Make validate() public.
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Commit 7a0405fd3fe20a4fb4f2ceed7bf9d08f2a356018 by gitcode
Add packageId to the list of identifiers to be checked.
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Commit 8ecf01007c19794d2feea6974bf98755fe0e5c9b by gitcode
Start a new EMLValidator class to replace EMLParser.
This class is far more efficient, and does not require any namespace
configuration.
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Commit 97e8c76dedd134b690b760a3607a6c248cf619b7 by gitcode
Added new jar for the EMLValidator.
Note that the EMLValidator is not yet complete, but has a subset of the
rules implemented. Which is why tests are not now passing.  I will
return to this shortly and finish off the rest of the validation rules.
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Commit 66e2bc673daaf318d4fb8dd99934745fe9487ba7 by ssfchong
initial commit
This is an outline for the semantic annotations primer documentation.
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Commit 1ceab640dffb4bf190ac0187dd9f25f034310736 by noreply
add examples to /eml/annotations and /eml/additionalMetadata
Added EML examples to the /eml/annotations and /eml/additionalMetadata
sections of the primer.
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Commit 05332e0d5008b25c8136c2161070cf52a79ea78e by noreply
add code sample to attribute annotation example
Added an EML code snippet to demonstrate how EML attributes are
annotated.
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Commit d60f2b6281ca4ad469ef37b9eaebca2e6a589b40 by noreply
add example dataset annotation, fixed formatting
Added sample code to show an annotation example in the dataset element.
The spacing format in the EML attribute element sample code was also
edited.
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Commit 0d225559ac2e3aa0cb9265d24ebe3e3bd1e00955 by noreply
add draft of attribute annotation text
In progress draft of the attribute annotation documentation
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Commit 04c6d9a491ddc394994010f0d2a383577ca08dca by noreply
add documentation to attribute annotation section
Added documentation to the attribute annotation section.  Also changed
order of the document
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Commit 4fd2f1a8290e895d7250ea05464bdbd8d48a68b2 by noreply
edit headings, and attribute, entity, and introduction sections
Edited the headings, and attribute, entity, and introduction sections.
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Commit f043d18cf6d3400fdfc83a027fe2b001f1ccea49 by noreply
describe containsMeasurementsOfType object property
Added a sentence about oboe:containsMeasurementsOfType being a "default"
object property for annotating measurements.
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Commit e59a4714e6370c768dcc1343c37f1e6e2fb18bc3 by noreply
edit attribute annotation text
Edited the text for the attribute annotation section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 00815bebcad74a83ac3ba113c76ed0404e09156c by noreply
add example for entity annotation
Added a code snippet showing an example entity annotation.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 86f259574075127e9d5817639adf1d37e3f79853 by noreply
add entity-level annotation text
Added text to the entity-level annotation section
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Commit 91c2b45836260285d4c48941a1295a96ba676672 by noreply
edit entity and attribute annotation sections
Edited the text in the entity and attribute annotation sections
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit b03bc3754b7343e31da0c809a5f6ca0fdc222051 by noreply
edit dataset section
Added text to the dataset section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 009c7f96d0e37736e2fd33a3dc652a807d73ebd3 by noreply
add text to dataset section
Added text that describes how to annotate datasets.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit e24c036d1f5b53644b2dcefc633b1c06bd534635 by noreply
add text to /eml/annotations section
Added text to the /eml/annotations documentation.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit f6dc2b881a350acd6e3643339e1b548bd951063a by noreply
add explanation of examples to /eml/annotations
Added text explaining the annotation examples in the /eml/annotations
section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit bf84a1574e37d061c116515941878a607c0a92e3 by gitcode
Add the annotations primer to the gitbook.
The file was modifieddocs/_bookdown.yml (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 25e5217a4ab51e10ca8a96c266148ecc6da5fbe6 by noreply
add text to additionalMetadata section
Added text to the additionalMetadata section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 3f36ec905993e2eaed2c04b9184ce504e7b25a9b by noreply
add text to the additionalMetadata section
Added text to the additionalMetadata section
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Commit 25f6b567b1edf76e3b0d6526f28f1a2ca367c6a3 by noreply
update text in the /eml/additionalMetadata section
Added more text to the /eml/additionalMetadata section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 82a5cb800e474ffbae81f7ce10f9d0facca0c060 by noreply
add introduction to primer
Added introductory text to the semantic annotations primer.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit b4cf461d1ec0a65739c78a7f235cc96d8b100cd5 by noreply
add text to introduction
Added text to the semantic annotations introduction section.
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Commit eb8263e2bd5f5ec8c9456ac1d5c6c687e87bffaf by noreply
reorganize introduction
Reorganized introduction section and created a separate section for
Semantic Annotations in EML 2.2.0
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Commit 434b9036063dddf9cf6c322affa43f5268b3ae96 by noreply
update semantics in EML 2.2.0 section
Updated the semantics in EML 2.2.0 section.
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Commit e18cc9e301e2d36e590d8c1808d478df68e6880b by noreply
update headings and text
Updated the headings and text for the Semantic Annotations in EML 2.2.0
section in the primer.
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Commit aeed2a3623fa41d2c1f29e0e4fa1d00064b12935 by noreply
reorganize semantic annotations primer
Reorganized the semantic annotations primer so that it flows better.
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Commit 6865d196fb9b12453eb4ad1d83e4a00ac863b18f by noreply
update semantic annotation primer
Edited text in the Semantic Annotations in EML 2.2.0 section.
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Commit 440aef5d88126222be58be0da1dbbfd4a6717b00 by noreply
updated semantic annotations primer
Edited the semantic annotations primer.
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Commit dd03d73b80fb8a9f6b328f0dd563032126bdb669 by noreply
edited semantic annotations primer text
Added references to other chapters and changed references to
/eml/additionalMetadata and /eml/annotations.
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Commit 7e135b07eb9b3c2c3f6127b0dfd2f0c2c3949441 by noreply
update examples
Updated the pattern examples in the semantic annotations primer.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1d5d2e1133dae03092ba6f0943ad531ac13834a9 by noreply
update generic examples
Updated the generic examples
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Commit 64e5541b22ffcb2c3252653d4908a89bac18688d by noreply
edit semantic annotations primer
Edited semantic annotations primer.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit ad21a90f139696146c5341e68dedf4c8f6551f9d by noreply
update examples and text
Updated the text and EML examples in the semantic annotations primer
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Commit 55ffb403daa8cf27eed2f54dadfe61b196bf144e by noreply
add label information
Added information about the label attribute in the URIs
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Commit a7f24f1789e7511863c4b0967afa5533c5f938be by noreply
Add label information
Add label information to the semantic annotation primer.
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Commit d922943aa96ef250feb22ddf6bf7a6797e9e1417 by noreply
update semantic annotations primer
Edited text in semantic annotations primer.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 5500d53d96da861c008026009c48f28a30e5215c by noreply
edited examples and text
Added labels to the pattern examples. Made edits to the text
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Commit 1389f29ab202345e7a4f39adfbb794c7613c39f2 by noreply
edit annotation pattern examples
Edited the annotation pattern examples so that they are more generic.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 56d05d9c1f9e9e6a3daf8e4e3a1d0a37c671d67c by noreply
edit example explanations
Made the URIs clickable in the text that explained the examples.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 16047b0cdd3b9629224b760fe0080216d9d16c54 by noreply
add references to data property
Added references to data properties, in addition to object properties,
when describing the propertyURI elements.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1235e11cca9a7538e55e5f8f40b0949ecff75560 by noreply
add specific annotation example
Added a more specific attribute-level annotation example and explanation
after the dataset/entity/attribute pattern example.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit c0c07fc2274bc444d2a54b862cf70b4e235cd96b by noreply
edit dataset annotations section
Edited the dataset annotation section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1bc11d0cc167e2baec28857413c6b94efdbf81c0 by noreply
proofreading edits
Made proofreading edits.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 8d3da64f528449c271e6c280e686698da404c28e by noreply
clarify explanations about subjects and ID values
Clarified that the id attribute value itself is not the subject in a
semantic statement, but rather refers to the subject. The subject is the
element containing the id.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit d76011bdc15204c74c461b46782d92d222587b57 by noreply
edit example text
Edited the text in one of the examples for clarity.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1d25b0c829b69cc5cdee7a200905bcfd1b6ede34 by noreply
edit and add more examples
Edited the existing examples. Also added examples to better illustrate
the pattern examples.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 70994e8abcdc5bff07089b9e9260eaacd6c665c5 by margaret.obrien
adding a script to build schema documentation using Oxygen
The file was addedbin/build_schema_documentation.sh
Commit 7c60bc38f167223dbe93b2e0c259c95d3c0e8200 by margaret.obrien
adding script to build documentation
The file was modifiedbin/build_schema_documentation.sh (diff)
Commit c10e03c59a27aa1ec7b4147d71ed9d46af0acbda by noreply
edit code blocks highlighting
Edited the syntax highlighting in the pattern and example code blocks to
make them easier to read.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit eb0dcb4eadbc255d017b73c0ef7911b1e54fb35b by noreply
clarify use of additionalMetadata element
Clarified how the 'additionalMetadata' element is used, as per Bryce's
comment.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 062f85e555bea8451de4d8958f9788efb4923693 by noreply
edit entity annotation section
Made minor edits to the entity-level annotation section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 383a1cd592f8575b705d7759f52a98177fcd584e by noreply
add relative links
Added relative links to other sections of the bookdown.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 7b0faa8315ac26e98bc972a96c6948906fbf5bd8 by noreply
change dataset to top-level resource
Change the dataset-level section to top-level resource because other
resources can also be annotated.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 0870d1a2415c71d4676d8afb9970ffe324487dad by noreply
edit headings and top-level resources section
Edited the headings and the information about top-level resources.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1b6adac8f8fc54ad91db30479e6199c8d6236941 by noreply
edit top-level resource section
Combined the text from the pattern to the top-level resource section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit b74474d3c9c27d7989708a13b794331da428e979 by noreply
edit entity-level annotation section
Combined the entity pattern text into the entity-level annotation
section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 7e166649acf7b8a6d98b16d5f234422aec78e9d9 by noreply
update annotations text
Updated the top-level resource, entity-level and attribute sections.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 62c09eab48e29a945b8af6d36b8f74cdb7b04dce by noreply
edit attribute annotation text, remove pattern
Edited the attribute annotation text section and removed the section on
patterns for dataset, entity and attribute annotations.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit e0a13eec3d4dfffa9492bcf733521c63755195ee by noreply
edit annotations element section
Removed the pattern for the annotations element section and incorporated
the text into the explanation.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit b69c1a7b8d2e23ddfbf471d04806f78a0310641f by noreply
edit additionalMetadata section
Edited the additionalMetadata section and removed the annotation
pattern.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 84d7db1144063f23b0b7ff7a564997a0f9f91040 by noreply
clean up text
Cleaned up some of the text in a few sections.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit f3235e0b1e2731b98de102b0128eaa0f53344ba8 by noreply
edit introduction
Spiced up the introduction
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit dd6659f741fc6b9cbd29ad4e80dd084454207404 by noreply
edit annotations section
Edited the annotations element section
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 9d82237f7f647610dc3e835c183af3a4d29d44bf by margaret.obrien
in example, ref to ITIS is the IRI (URL)
The file was modifiedsrc/test/resources/eml-i18n.xml (diff)
Commit 3896ff8516451cde272b614ea81de31ef2d755cc by petridish
Fix minor issues with Oxygen doc build script
- Most major thing is that the config went from command line params to
an external config (-cfg arg) which allows a little more tweaking than
just the command line args
- Fixed issue with final cp -r command that'd fail for me
- Fixed various minor issues with string escaping and subprocesses
- Added set -e and pipefail because bash
The file was addedbin/oxygen_documentation_settings.xml
The file was modifiedbin/build_schema_documentation.sh (diff)
Commit 916b5b31666b518badc825257c9a33da1812aa2c by margaret.obrien
examples for taxonId are URIs
The file was modifiedxsd/eml-coverage.xsd (diff)
Commit 04cf0d5ca692e1681281792af1ea1edd27b6ad53 by petridish
Update schema diagrams for 2.2.0
The file was modifiedimg/eml-access.png (diff)
The file was modifiedimg/eml-coverage.png (diff)
The file was addedimg/eml-semantics.png
The file was modifiedimg/eml-spatialVector.png (diff)
The file was modifiedimg/eml-view.png (diff)
The file was modifiedimg/eml-storedProcedure.png (diff)
The file was addedimg/eml-award.png
The file was modifiedimg/eml-literature.png (diff)
The file was modifiedimg/eml-physical.png (diff)
The file was modifiedimg/eml-protocol.png (diff)
The file was modifiedimg/eml-constraint.png (diff)
The file was modifiedimg/eml-spatialReference.png (diff)
The file was modifiedimg/eml-party.png (diff)
The file was modifiedimg/eml-text.png (diff)
The file was modifiedimg/eml-project.png (diff)
The file was modifiedimg/eml-software.png (diff)
The file was modifiedimg/eml-methods.png (diff)
The file was modifiedimg/eml-attribute.png (diff)
The file was modifiedimg/eml-dataTable.png (diff)
The file was modifiedimg/eml-entity.png (diff)
The file was modifiedimg/eml.png (diff)
The file was modifiedimg/eml-resource.png (diff)
The file was modifiedimg/eml-dataset.png (diff)
The file was modifiedimg/eml-spatialRaster.png (diff)
The file was addedimg/eml-otherEntity.png
The file was modifiedxsd/eml-unitTypeDefinitions.xsd (diff)
Commit 9e55c97fcd548b0ef92dafc3a7a59e8a246845af by gitcode
Add angle units to unit enumeration so validation works.
Now degree, radian, steradian, grad are all back in the standard unit
list.
The file was modifiedxsd/eml-unitTypeDefinitions.xsd (diff)
Commit a25c845a9819e631b88ae4405f7b8045c8667e03 by gitcode
First pass at new EML Validator.
Implements newly clarified validation rules that go beyond the normal
schema validation.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
The file was modifiedlib/eml.jar (diff)
The file was modifiedsrc/test/resources/invalidEML/eml-error-annot-missing-id.xml (diff)
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
Commit 5036bfaefe28cbb9b6002d108d002987c166c9b7 by gitcode
Reformat and document EMLValidator.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 85b8b8df6c403a3d3c5e090556313d805a1ab973 by gitcode
Moved EML module files to new subdirectory.
Now the main test directory contains only complete EML files.  Module
level files should go into moduleEML, and will only be tested against
the SAX parser, as they will no longer pass the test for EMLValidator.
The file was addedsrc/test/resources/moduleEML/eml-software.xml
The file was addedsrc/test/resources/moduleEML/eml-party.xml
The file was addedsrc/test/resources/moduleEML/eml-semantics.xml
The file was removedsrc/test/resources/eml-software.xml
The file was addedsrc/test/resources/moduleEML/eml-access.xml
The file was removedsrc/test/resources/eml-text.xml
The file was addedsrc/test/resources/moduleEML/eml-physical-inline-cdatasection.xml
The file was removedsrc/test/resources/eml-literature.xml
The file was removedsrc/test/resources/eml-physical.xml
The file was addedsrc/test/resources/moduleEML/eml-storedProcedure.xml
The file was removedsrc/test/resources/eml-semantics.xml
The file was removedsrc/test/resources/eml-literatureInPress.xml
The file was removedsrc/test/resources/eml-method.xml
The file was addedsrc/test/resources/moduleEML/eml-view.xml
The file was removedsrc/test/resources/eml-storedProcedure.xml
The file was removedsrc/test/resources/eml-inline.xml
The file was addedsrc/test/resources/moduleEML/eml-literatureInPress.xml
The file was removedsrc/test/resources/eml-protocol.xml
The file was addedsrc/test/resources/moduleEML/eml-text.xml
The file was addedsrc/test/resources/moduleEML/eml-physical-inline.xml
The file was removedsrc/test/resources/eml-project.xml
The file was removedsrc/test/resources/eml-offline.xml
The file was removedsrc/test/resources/eml-2.1.1-all-units.xml
The file was removedsrc/test/resources/eml-party.xml
The file was removedsrc/test/resources/eml-entity.xml
The file was addedsrc/test/resources/moduleEML/eml-dataTable.xml
The file was addedsrc/test/resources/moduleEML/eml-attribute.xml
The file was addedsrc/test/resources/moduleEML/eml-dataset.xml
The file was removedsrc/test/resources/eml-spatialVector.xml
The file was removedsrc/test/resources/eml-access.xml
The file was modifiedlib/eml.jar (diff)
The file was removedsrc/test/resources/eml-attribute.xml
The file was removedsrc/test/resources/eml-dataTable.xml
The file was removedsrc/test/resources/eml-dataset.xml
The file was removedsrc/test/resources/eml-view.xml
The file was addedsrc/test/resources/moduleEML/eml-entity.xml
The file was removedsrc/test/resources/eml-physical-inline-cdatasection.xml
The file was addedsrc/test/resources/moduleEML/eml-literature.xml
The file was addedsrc/test/resources/moduleEML/eml-protocol.xml
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/SaxValidateTest.java (diff)
The file was addedsrc/test/resources/moduleEML/eml-inline.xml
The file was addedsrc/test/resources/moduleEML/eml-project.xml
The file was removedsrc/test/resources/eml-physical-inline.xml
The file was addedsrc/test/resources/moduleEML/eml-spatialVector.xml
The file was addedsrc/test/resources/moduleEML/eml-physical.xml
The file was addedsrc/test/resources/moduleEML/eml-method.xml
The file was addedsrc/test/resources/moduleEML/eml-2.1.1-all-units.xml
The file was addedsrc/test/resources/moduleEML/eml-offline.xml
Commit 6f3297eb54a9a6a3ed0dcbc2cb7b8650817c2496 by gitcode
Remove whitespace in describes that caused validation error.
The file was modifiedsrc/test/resources/eml-datasetWithCitation.xml (diff)
Commit cc8e3edfdbfcf919337f112622215bdfb37bb5c4 by gitcode
Fix XPath in validator to properly access all describes fields.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 53b4d28972a27c41f1ccdfe1f910e76c4e2e8915 by gitcode
Reformat Servlet for consistency.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
Commit 7e3a980057cd19acf8103c4e45b9a6d4182dc986 by gitcode
Got rid of EMLParser, replaced by EMLValidator.
The file was removedsrc/main/java/org/ecoinformatics/eml/EMLParser.java
The file was removedsrc/test/java/org/ecoinformatics/emltest/EMLParserTest.java
The file was removedsrc/main/java/org/ecoinformatics/eml/EMLParserException.java
Commit dc3b5bb5acd7ee7094d63bb898c3998d043167f3 by gitcode
Added getErrors() function to EMLValidator to return full lisst of
errors.
This allows a whole doc to be validated without pausing.
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 3c60e3620b0604969ed3f84043f6af98bd8beb82 by gitcode
Refactored EMLParserServlet to use EMLValidator now.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 431d9b8d6d60e21b0720fb9b051e30734760ea26 by gitcode
Update travis with new location of sample file.
The file was modified.travis.yml (diff)
Commit 26af18e106752cb75cc3f8f96984b3410dfbfb36 by gitcode
Restore the EMLParser, exceptions, and tests.
In the process, cleaned up some of the dead code, and modified tests sso
that EMLParserTest doesn't fail on invalid docs.  Next step is to
refactor EMLParser to use EMLValidator for EML 2.2.0 and later docs.
The file was addedsrc/main/java/org/ecoinformatics/eml/EMLParser.java
The file was addedsrc/main/java/org/ecoinformatics/eml/EMLParserException.java
The file was addedsrc/test/java/org/ecoinformatics/emltest/EMLParserTest.java
Commit dd04329037ebcfbfce2c5023b03c943cfd8961b4 by gitcode
Clean up dead code and make tests work.
The file was modifiedlib/eml.jar (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
Commit d2d2137270c52ced3028ce5ee0cd72aed6530215 by gitcode
Reformat parser code for consistency with NCEAS style.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParserException.java (diff)
The file was modifiedlib/eml.jar (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
Commit 13f28fc7e3e5ef39b1a069ae5e44dc4d2626dc3b by gitcode
Begin refactoring EMLParser constructors.
Partially complete, mostly consolidated duplicated code, and began
setting up for the namespace comparisons.
The file was addedsrc/main/java/org/ecoinformatics/eml/SemVersion.java
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
Commit a8a201082e0972de1d361ab235d5a1e1cb09e32d by gitcode
Refactor EMLParsser to use EMLValidator.
When EMLParsser is called, delegate to EMLValidator for versions of EML
after 2.2.0.  Still need to handle String constructor.
The file was addedsrc/test/resources/moduleEML/stmml_dictionaryWithDefintion.xml
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
The file was modifiedlib/eml.jar (diff)
The file was removedsrc/test/resources/stmml_dictionaryWithDefintion.xml
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
Commit 64746ce005c0c15e9336d27d87c730f8f3300ed3 by gitcode
Switch EMLValidator to using File param in constructor.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
The file was modifiedlib/eml.jar (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParserServlet.java (diff)
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
Commit 157ce351aa2b343a952a789c408e0296321e0a6a by gitcode
Add new EMLValidator constructor to work on String inputs.
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLValidatorTest.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLValidator.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 4dbbb1558b3ac63552f074ad7db3916c11b6227e by gitcode
When parsing a String using EMLParser, delegate to EMLValidator.
Now EMLValidator is used for validating from the String constructor to
EMLParser(String) in addition to the File constructor, at least for EML
after 2.2.0.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/EMLParserTest.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 200ec429283a0f6a85d7d6e27d3673f5e64301ef by gitcode
Deprecate EMLParser, use EMLValidator instead.
The file was modifiedsrc/main/java/org/ecoinformatics/eml/EMLParser.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit ff1642c7f35b55dd4e3d8361f6c653a5acc89830 by gitcode
Added 2.2.0 to the namespaces config variable.
This broke the tests because the schemas are not on ecoinfo yet, and so
I added code to the JUnit tests to determine the current release version
being tested and instead use the local `xsd/eml.xsd` file for that
namespace.
The file was modifiedsrc/test/java/org/ecoinformatics/emltest/SaxValidateTest.java (diff)
The file was modifiedsrc/main/resources/config.xml (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/eml/SAXValidate.java (diff)
The file was modifiedlib/eml.jar (diff)
Commit 515664e997937f9472d6eeec03641c58cde169f0 by gitcode
Add env to build for 2.2.0.
The file was modifiedbuild.xml (diff)
Commit d7ad9925f20e2d3d2acb907dce1060a20101cf8b by margaret.obrien
re-organized some text on primer: moved highights for each annot
location to lists, broke up paragraphs.  Added place-holder sections for
RDF examples, and checking logic. I think were gonna need a TOC
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 5ed6bbdbf7088f2c98a5453cbda1c31707346b5c by noreply
edit text and formatting
Proofread text and fixed made changes to some of the formatting.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 9ef26e2dca2c6aad90ceb2de81f189d40fd9fea0 by noreply
edited section titles
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 361fc30674a7e647163a5cac3b24bb65202c9644 by tao
Add the dataone maven repository. Change the utilities version from
2.0.0-snapshot to 2.0.0. NEED TODO: change the version of the library
from 0.9.1-snapshot to 0.9.1.
The file was modifiedpom.xml (diff)
Commit 723ebb41299a3eb519686f914b7879ba638a5ef0 by tao
Change the version of this project from 0.9.1-snapshot to 0.9.1.
The file was modifiedpom.xml (diff)
Commit f7c6f35679b2766d72368a931642f442ee50a6d5 by margaret.obrien
added examples of what-not-to-do and logical consistency
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 03f6aea88553516823dd11137ff17067910dc701 by margaret.obrien
adding example graphs and refs
The file was addeddocs/images/RDF_example_a.png
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was addeddocs/images/RDF_example_b.png
Commit ce8d4f2973dc4558670f0e12ade76f96a8868c5c by margaret.obrien
headings have consistent levels; added more caveats
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 5f002933d306f32d2927a850a24d9b45b0e206e0 by margaret.obrien
finished the table of triple components
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit ee6d0d1e8e71456d027a4d7011a21dcf5a235ea1 by margaret.obrien
paragraph describing what an RDF graph is
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit ac84b7a4fe9200dad0812b86b7a5ab4b2ed9b9b6 by margaret.obrien
ok, had to fix spacing around pngs
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 308bf5c3bcb8f6f835ac64b6bcf4695f312d03d6 by noreply
fixed typos, minor format changes
Fixed typos, made minor format changes.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 675f8fd8aad5f60d31a3797f10aa04b5286c301c by noreply
add RDF/XML examples
Added RDF/XML examples.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 4a2b8d31c8ed2df24af0b2df485be94d59eb5a8d by noreply
fixed typo and formatting
Fixed typo and formatting
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit e4f59e573baf8380cb58be39fbdfa03b83102f36 by noreply
add terms to glossary
Added terms and definitions to the glossary section.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 378da2c9a0bb89f1b839e7a5c23509a974a3e9e4 by noreply
add URL vs URI information
Added a section explaining the difference between URIs and URLs.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit df0d06c0930fd67dc503dcce68eaa3a2d9436923 by noreply
fixed RDF examples
Added closing brackets to the RDF examples.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit df934753c7771cb6cd49805e108aa754beac6ce9 by noreply
updated primer, but Steven had also made revs
made some changes to top 65 lines or so, especially regarding setting up
concrete example of an RDF triple, and talking about URI's and URL's
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 46c14108f4fd3609ad62a6a32c128934c9e13890 by noreply
added the glossary terms again, fixed typo
Added back the glossary terms and fixed a typo.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit a6fc613966c7c30146e69ffad29970cca131db61 by noreply
fixed RDF examples
Fixed typos in the RDF examples.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit bf107e28a871de4d26579c64c0a646ae8e04fa86 by noreply
fixed formatting
Made some formatting changes.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit f589d4df9858ab9e1f420236333a43c73e676aae by noreply
some further revs to intro section
tried to make intro section a synoptic statement of the motivation and
approach for enabling semantic annotation of EML, with a simple concrete
example of an RDF triple, and how URI's provide very powerful
annotations onto EML elements.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 0ee71ae45b163c907b4f238de49f4cadf781e20d by noreply
fixed example JRN URL to resolve more usefully
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit aa11610f51e9b4f945834873e87e3f5e69026ceb by noreply
fixed JRN dataset URL again...
... to resolve more usefully. It is tough knowing which URL denotes the
data package due to lack of content negotiation...
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit d728810ad1d35a4d6521ff42b73e3236385bc20e by noreply
changed predicate URI in first example
the RO predicate for "located in" way more popular than PATO one
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit c6077132d7fab8725e693aa9d29e82fd4b26493e by noreply
set subject (a jrn dataset) to pasta id.
agree with @mbjones - this was a web portal URL. the pasta ID is down
the page a bit. should we consider the DOI here instead?
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Commit 64cfdd8c9b53f0d528be0528878256dc28ae46d5 by noreply
added link to annotation primer
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Commit ce18e96624370cb6bc78c95ee4faaa486ec828fe by noreply
added @cboettig's ref on tidy and R
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 4f7a1bf31c5e4f0c0bfee6c876e9475d53207e73 by noreply
added more detail to the basic triple example
described a bit more detail regarding the simple triple example
introduced early in the Primer (ca. lines 50-65)
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Commit 157b6717119f03285ac799a91dafe657cd0616c1 by noreply
small revisions to intro wording
trying to further clarify document in lines 25-70
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 5c863c13b19d0c0e0d12db574689fc4373aafefd by noreply
condensed annotation explantations
Condensed the sections on top-level resource, entity-level, and
attribute annotations.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 076ddca29073da85d469c2e4227c5cab2320c8ce by noreply
edit eml/annotations section
Edited the eml/annotations section and removed some repetitive text
about propertyURI and valueURI elements
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Commit f6fe67a9c111ea47a22309ee4bcd2a803ad131a9 by noreply
edit eml/additionalMetadata section
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 27668e9aab26b0b7841aedda1a106af7fb60408f by noreply
try commit after Chong commits
minor changes
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 742d82d0e77f0135312a8180b749b1d71aa32cf7 by noreply
fixed URI to resolve
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit f1a559bec51cdf38ec4266be087e23c9f17c551c by noreply
removed namespace prefix
prefixes allowed in TTL but not N-Triple -- but N-Triple is simplest
syntax to understand so keep
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit a5c844369e49354f9b606e27ef81f338c57d2d50 by noreply
clarifying object property is a predicate
...trying to avoid confusion about words: subject, predicate, object--
e.g. using "subject" as a predicate, or referring to a predicate as an
"object property"-- even though these are valid uses...
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 8562d4f571266ca52aa835fbd7b43c0d4dea4556 by noreply
updated subject URI in initial example
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Commit 5f82b3b73aafccd9089aeb3e9da6f39f48d3abce by noreply
changed eml/annotations example
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 4d4d76a1a64eb3f8ee9551c7acc0d34181bacc6b by noreply
added comments to intro
Addressing Margaret's note about whether to separate RDF/semantic
annotation intro from rest of document.  I've added sentence to
recommend those already understanding basics of Semantic WEb to skip
directly to section on how to embed annotations in EML.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 5a06c17b8f63921e386d290a710702621c048e58 by noreply
introduced resource/property/value terms in intro
...since this was our choice for labelling components of triple in the
EML annotation syntax...
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Commit 84c9683dd31c2f8e5ecbc261f41c8df09bfb1a76 by noreply
added terse note about JSON-LD vis-a-vis RDF
lots of people seem confused about this and don't know that JSON-LD is
generalized RDF
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 1c6b5bb011bb516653199092f917420de1c59323 by noreply
changed Examples 1 and 2, fixed typos
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Commit 5de6ca6abdb27c54b41cd9978e87a6c5c7a61586 by noreply
edit Logical Consistency section
made edits according to Bryce's feedback (mostly)
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Commit ab96e6b419e88f3b5a15286bd16d31d52012dce5 by noreply
edit RDF graphs section
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Commit 1d18e570c927c2189ebeecfd875aae84fa313166 by noreply
edit RDF graphs section
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit c79668d001efac3a17b09b834b68f7c4d422e184 by noreply
removed table mapping triple to EML
Removed the table that mapped each triple component to their EML analog.
Don't think it added much more than what is already stated in the text.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit db7c8d6ba37d0a4af3d8eefed132f97cd717467e by noreply
minor edits to the intro
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 6dfbe4d3e7ecb4e5f038f46106c0a0dd352dfe8f by noreply
minor changes
still working on it
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit fce95009d12d4c764d9f8500b35e53b9da5bd229 by noreply
mark's edit
Have placed a bunch of side-notes in SLACK for Steven and Margaret
perusal
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Commit 887c7a8749525cad2c7253fb1d2fc5312192561d by noreply
added small explanation about OWL
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The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 9972508f20446ada90b79dc2103c5589a2897254 by margaret.obrien
added a group of questions to the FAQ. all pertain to the semantics
primer
The file was modifieddocs/eml-faq.md (diff)
Commit b695b0362801b2ed387c455a89831e5a458740ed by gitcode
Update README.
Fixes URLs in the list, adds ORCID to the simple example, changes the
developmet section to reflect new practices, adds detail in the history
section, and updates the fuding section.  Add a XML doc that ensures the
README example validates.
The file was modifiedREADME.md (diff)
The file was addedsrc/test/resources/eml-simple.xml
Commit a0150a1cc9f7c7080f562e488f10da26b296b157 by gitcode
Fix validation error due to duplicate id.
The file was modifiedREADME.md (diff)
The file was modifiedsrc/test/resources/eml-simple.xml (diff)
Commit 2c674983242d8111561c7e723b803483f7184d79 by tao
Add the class fields language, abstract and keywords.
The file was modifiedsrc/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 572441feea47d97e7c1e6e6f4ad478aa237374d2 by tao
Add the code to parse and store keywords, abstract and language.
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Commit 0b6ef3bd69fdc3a0ecfe2a0fcda5cff47edbfc2e by tao
Add test code for new fields.
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Commit a1bf8f53905113bc0f4fca26f9f9ca7543c30844 by tao
Bump the version to 0.9.1
The file was modifiedpom.xml (diff)
Commit b706d7d41c6c66553a7bbabe8cbfc75a130efd57 by tao
Add the code to parse the userId in the party element.
The file was addedsrc/main/java/org/ecoinformatics/datamanager/parser/UserId.java
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The file was modifiedsrc/main/java/org/ecoinformatics/datamanager/parser/Party.java (diff)
Commit 3a5bb4f677f3ef907f29136b93c12c2006318399 by tao
Add the publisher and pubDate to the parser.
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The file was modifiedsrc/main/java/org/ecoinformatics/datamanager/parser/Party.java (diff)
The file was modifiedsrc/main/java/org/ecoinformatics/datamanager/parser/DataPackage.java (diff)
Commit 08dc124c198de8b7cec03a5fe359d0afed65876b by tao
Bump the version to 0.9.2.
The file was modifiedpom.xml (diff)
Commit 8d8d35cfc35b385fb938f2f11200f84a06112b51 by tao
Fixed a typo on the word "abstract". The abstract is a keyword on the
java code, somehow the editor auto changed the word.
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The file was modifiedsrc/main/java/org/ecoinformatics/datamanager/parser/generic/GenericDataPackageParser.java (diff)
Commit 0dc25cdbb87737529345cdf41b2daaba87d4c518 by margaret.obrien
reorganized major sections. TO DO: links from text to appendix
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Commit 9e8e502c804f374d6a1a0dcb4a280861e383eb25 by noreply
moved asterisks in links
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Commit 93484da1e1e1890434f137b8662b1fae543f3fc8 by noreply
moved anchor tags to above heading
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Commit 97e1ab18fc90b59f8ef20ea3d378aa2e4ec4a983 by noreply
moved from some more anchor tags.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit d168e1116e01ce8f23cfaf886e2093b56298ad5e by noreply
cross-links between examples and their rdf graph
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit b543d50fcda1d4a880b04417bc047ab58de927ae by noreply
more cross refs
can't seem to test these in O2!
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit a16438c3be477c684018cac0631be8ae69c264b8 by noreply
moved rdf for example 3 to the correct place.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 8b5be8b7b7ffe3040d8a69b4700cc9f17a2e9d82 by noreply
extra asterisk removed
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 7960ff60d156633b2def81c4a431abd460973867 by noreply
graph for example 3 lowered in hierarchy
to match example 4 graph
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 0e7b1361e878328cb91a222d6f4e4f8061c2a316 by noreply
a few leading spaces removed.
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Commit e84580646d7c0f38fc77328f5ddfecbee0aa995e by noreply
broke organization para
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Commit 466d1b92efa09d4f215c9d0fbb7a7e70b509fe6d by noreply
removed subheaders in intro
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Commit 338e8182ef3615d957c30580fa02dd051a052a29 by noreply
add to organization para
describe EML elements as code blocks.
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Commit 9613a789c396e92041c1ea3b2b070f24b0be1dc7 by noreply
deleted extra glossary ref
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Commit 902fcd2448dedf701974d4248bf5c69884a4dc72 by noreply
links to example rdf in logical consistency sect.
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Commit f3a05384216c999d3078220064f51ad27a851081 by noreply
checking for logical consistency section
a few more words, to be clearer.
The file was modifieddocs/eml-semantic-annotations-primer.md (diff)
Commit 0f25475542c4f307acd8a8e80336467f9145812a by noreply
turned simplest triple into a code block
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Commit c115e8c975a8188196ea2411971a3fdd0f7d440e by gitcode
Fix typos in README.
The file was modifiedREADME.md (diff)
Commit 85a789d312ba6bef513eb2456ff783f660bc504e by noreply
added Q:A answers about what is: "dereferencing", URI vs URL, and SKOS
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Commit 53287f2aa1e44b2fcbe7ce81580361ebddbfd481 by noreply
Answered Q:A section about SKOS, RDFS, and an example using rdfs:label
Still working on good example of an RDF graph...
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Commit 2f882bcf0f16f3d9c5d7009661a3a1af97cd41e6 by noreply
answered questions about interpreting an RDF Graph, and if tools are
available to help semantically annotate
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Commit eed752f3a977321a6d3729b6b58a62de0f1803a5 by noreply
fine-tuned text on answer to "what does the RDF look like?"
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Commit 04c52274b749b49ecfea1ad16829dcc0cd7bb99d by noreply
small grammatical fix
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Commit 590cf5774aae9a7d6197cac59156fdf8a7e8a140 by noreply
removed extra newline and parentheses in intro
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Commit 4f384205d6e05f70c62a97856d8f1a9619c1d643 by noreply
added comments
Added 3 suggestions. These have been placed inside brackets and have
"SC" at the beginning (e.g. [SC: ... ])
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Commit b7ca87288c43123965d57d1c2423bebaf9fd1317 by noreply
added comment and fixed misspelling
Added a comment about defining acronyms, in brackets with my initials
(i.e. [SC: ...] ). Also fixed a misspelling
The file was modifieddocs/eml-faq.md (diff)
Commit d0d35c8a73110f965910e1da9c038e7d8a3f25e6 by noreply
expanded acronyms
Expanded the first usages of IETF and RFC.
The file was modifieddocs/eml-faq.md (diff)
Commit c1a8215332948e74b3b4e938507e7a59a54f0fbc by noreply
updated faq to use a schema.org "predicate"
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Commit 315726bffefd5a76a4147973f817d64ebf93ea7e by gitcode
Clarify use of resource titles and translations
Fixes #336
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Commit 09ffc6b04b01fc8f2b707ce17ebe0b0196ecf123 by petridish
Add support for id, system, and scope attribute on annotation elements
Resolves #335
The file was modifiedxsd/eml-semantics.xsd (diff)
The file was addedsrc/test/resources/eml-with-annotations-with-ids.xml
Commit 7c766034319285f7def2bd8325ed75435b85c73f by noreply
small addition to dereferencing text
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Commit 28a9f2980086442880d1d11312323c0c075ac6d1 by noreply
small rewording about diff among URI/URL/URN
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Commit 84335d8f920bc2146c246069995a3fb50c688b0a by noreply
a few more minor grammatical edits
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Commit 5983a1bbed454296befe92f27e469cb4112af286 by noreply
update contributors list
Following up on #309, I added myself and a placeholder for @srearl
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Commit 8991dc35a5e61e45ee92560033920ecba8257316 by noreply
update citation
Added Steven Chong to the citation.
The file was modifiedREADME.md (diff)
Commit 33384b48b3278eaf3e71bebf90fbd70badf01c3d by noreply
added simpler para 1; blended in para 2
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Commit 978ef99abb7d00c25acbfd27b18b6d213919b24c by margaret.obrien
Update eml-semantic-annotations-primer.md
address https://github.com/NCEAS/eml/issues/340#issuecomment-515168433
items 1, 3, placeholders for glossary entries (item 6)
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Commit dd152a1720545b5233cd5d466e96d06e7f1963d7 by margaret.obrien
Update eml-semantic-annotations-primer.md
typos, section header syntax.
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Commit ea64fd6eecb952ef48f704c4ff072e63950b9cbf by margaret.obrien
Update eml-semantic-annotations-primer.md
simplified introduction further. no arcane terms till paragraph 4. woo
hoo
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Commit 01d352ed07c7a8c17012f02d146ba2794fd2ddd6 by gitcode
Fix whitespace problems with markdown headings in semantics primer.
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Commit 1ef70690115244a304360512172bea9e57e5d233 by margaret.obrien
task 5 done. started on 4 (example text)
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Commit cc1b085689598be0eedc758508caa58459dd96c0 by gitcode
round out contact info for searl
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Commit 0644cf2602f2f962e2d34b5ef060345fa38a5ac9 by gitcode
Ignore project config files in git.
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Commit b1b77f755b9e014bd437e21c6f2fff5085bbbb63 by gitcode
Update EML schemas to use new https-based namespace.
The new namespace is of the form
`https://eml.ecoinformatics.org/eml-2.2.0`.  XSD files, stylesheets, and
test documents were updated. Work related to issue #341.
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The file was modifiedlib/eml.jar (diff)
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The file was modifiedstyle/eml/eml.xsl (diff)
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The file was modifiedREADME.md (diff)
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The file was modifiedsrc/test/resources/eml-i18n.xml (diff)
Commit 808fb1f96ac1d7c4dd9bde8d8b4a6be3f87f4af4 by petridish
Add Oxygen docs to book and tweak the book build
I built the Oxygen docs with our build script and commit them here and
also integrate them into the Bookdown book with a custom build script.
The new build script does two things:
  1. Renames the HTML output of ../README.md which we want to use as
    the index.html of the book. A custom build script has to do this
    because Bookdown tries to use the top level header of the file
    as the filename but we want to use index.html so the book works
    nicely.
  2. Copies in the Oxygen docs into the build book
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