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A

abstracT - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
AccessPolicy - Class in org.dataone.service.types.v1
A set of rules that specifies as a whole the allowable permissions that a given user, group, or system has for accessing a resource, including data, metadata, resource map, and service resources.
AccessPolicy() - Constructor for class org.dataone.service.types.v1.AccessPolicy
 
accessPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
 
AccessPolicyEditor - Class in org.dataone.client.types
 
AccessPolicyEditor(AccessPolicy) - Constructor for class org.dataone.client.types.AccessPolicyEditor
Instantiates an AccessPolicyEditor that manipulates the given AccessPolicy.
AccessPolicyMarshallingAdapter - Class in org.dataone.service.util
 
AccessPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessPolicyMarshallingAdapter
 
accessRights - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
AccessRule - Class in org.dataone.service.types.v1
A rule that is used to allow a :term:`subject` to perform an action (such as read or write) on an object in DataONE.
AccessRule() - Constructor for class org.dataone.service.types.v1.AccessRule
 
AccessRuleMarshallingAdapter - Class in org.dataone.service.util
 
AccessRuleMarshallingAdapter() - Constructor for class org.dataone.service.util.AccessRuleMarshallingAdapter
 
AccessUtil - Class in org.dataone.service.types.v1.util
A helper class to simplify the use of AccessRules and AccessPolicies consisting of static factory methods for creating these nested objects (accessPolicy has accessRules has Permissions and Subjects, each subject has a value)
AccessUtil() - Constructor for class org.dataone.service.types.v1.util.AccessUtil
 
accrualMethod - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
accrualPeriodicity - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
accrualPolicy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
addAccess(Subject[], Permission) - Method in class org.dataone.client.types.AccessPolicyEditor
For the given Subjects, adds the permission specified unless the matching or a 'greater' permission is already there.
addAdditionalInfo(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Add a 'additionalInfo' element item.
addAlgorithm(String) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Add a 'algorithm' element item.
addAllow(AccessRule) - Method in class org.dataone.service.types.v1.AccessPolicy
Add a 'allow' element item.
addAllowedNode(NodeReference) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Add a 'allowedNode' element item.
addAllowedObjectFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Add a 'allowedObjectFormat' element item.
addAndDownloadData(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Puts an object with the given Identifier to the package's local, temporary data store.
addAndDownloadData(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Puts an object with the given Identifier to the package's local, temporary data store.
addBlockedMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Add a 'blockedMemberNode' element item.
addContactSubject(Subject) - Method in class org.dataone.service.types.v1.Node
Add a 'contactSubject' element item.
addData(D1Object) - Method in class org.dataone.client.v1.itk.DataPackage
Puts a D1Object directly to the package's local, temporary data store without downloading it from a node.
addData(D1Object) - Method in class org.dataone.client.v2.itk.DataPackage
Puts a D1Object directly to the package's local, temporary data store without downloading it from a node.
addDateParamPair(String, Date) - Method in class org.dataone.service.util.D1Url
convenience method for adding date object to query parameters.
addDescription(String) - Method in class org.dataone.service.types.v1_1.QueryField
Add a 'description' element item.
addDistributionMetadata(String, String) - Method in class org.dataone.eml.EMLDocument
add a url and mime type to the document reference
addEmail(String) - Method in class org.dataone.service.types.v1.Person
Add a 'email' element item.
addEquivalentIdentity(Subject) - Method in class org.dataone.service.types.v1.Person
Add a 'equivalentIdentity' element item.
addFilePart(String, File) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
add a file part to the MMP
addFilePart(String, InputStream) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
add a file part to the MMP, using InputStream This method writes the contents of the stream to a temp file and sends it.
addFilePart(String, Object) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
The DataONE object (serializable datatype) passed in is serialized as the specified type to file.
addFilePart(String, Object, Class) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
Deprecated.
addFilePart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
This method generates a temp files for sending, containing the value parameter.
addFormat(Session, ObjectFormatIdentifier, ObjectFormat) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
addFormat(Session, ObjectFormatIdentifier, ObjectFormat) - Method in interface org.dataone.service.cn.v2.CNCore
 
addGivenName(String) - Method in class org.dataone.service.types.v1.Person
Add a 'givenName' element item.
addGroup(Group) - Method in class org.dataone.service.types.v1.SubjectInfo
Add a 'group' element item.
addHasMember(Subject) - Method in class org.dataone.service.types.v1.Group
Add a 'hasMember' element item.
addHttpClientMonitor(HttpClient) - Method in class org.dataone.client.utils.HttpConnectionMonitorService
Add an HttpClient to close upon exit.
addIsMemberOf(Subject) - Method in class org.dataone.service.types.v1.Person
Add a 'isMemberOf' element item.
additionalInfo - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
 
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.Log
Add a 'logEntry' element item.
addLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.Log
Add a 'logEntry' element item.
addMonitor(HttpClientConnectionManager) - Method in class org.dataone.client.utils.HttpConnectionMonitorService
Add a connectionManager to monitor
addMonitorInfo(MonitorInfo) - Method in class org.dataone.service.types.v1.MonitorList
Add a 'monitorInfo' element item.
addNextPathElement(String) - Method in class org.dataone.service.util.D1Url
adds the next path element to the path portion of the URL, encoding unsafe characters.
addNode(Node) - Method in class org.dataone.service.types.v1.NodeList
Add a 'node' element item.
addNode(Node) - Method in class org.dataone.service.types.v2.NodeList
Add a 'node' element item.
addNonEmptyParam(String) - Method in class org.dataone.service.util.D1Url
adds a single parameter to the query portion of the URL (not a key-value pair) encoding unsafe characters.
addNonEmptyParamPair(String, String) - Method in class org.dataone.service.util.D1Url
adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addNonEmptyParamPair(String, Integer) - Method in class org.dataone.service.util.D1Url
adds a key value pair to the query portion of the URL, placing '=' character between them, and encoding unsafe characters.
addObject(Identifier, Date, Identifier, Identifier, Boolean) - Method in class org.dataone.client.types.ObsoletesChain
 
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFormatList
Add a 'objectFormat' element item.
addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFormatList
Add a 'objectFormat' element item.
addObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectList
Add a 'objectInfo' element item.
addObjectLocation(ObjectLocation) - Method in class org.dataone.service.types.v1.ObjectLocationList
Add a 'objectLocation' element item.
addOption(String) - Method in class org.dataone.service.types.v2.OptionList
Add a 'option' element item.
addParamPart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
add a param part to the MMP
addPermission(Permission) - Method in class org.dataone.service.types.v1.AccessRule
Add a 'permission' element item.
addPerson(Person) - Method in class org.dataone.service.types.v1.SubjectInfo
Add a 'person' element item.
addPreEncodedNonEmptyQueryParams(String) - Method in class org.dataone.service.util.D1Url
Method for adding query params that bypasses encoding.
addPreferredMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Add a 'preferredMemberNode' element item.
addProperty(MediaTypeProperty) - Method in class org.dataone.service.types.v2.MediaType
Add a 'property' element item.
addProperty(Property) - Method in class org.dataone.service.types.v2.Node
Add a 'property' element item.
addPublicAccess(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
Given the original policy, return an AccessPolicy containing all of the original rules, plus a new rule allowing public read permission, if not already in place (otherwise returns the original).
addQueryEngine(String) - Method in class org.dataone.service.types.v1_1.QueryEngineList
Add a 'queryEngine' element item.
addQueryField(QueryField) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Add a 'queryField' element item.
addReplica(Replica) - Method in class org.dataone.service.types.v1.SystemMetadata
Add a 'replica' element item.
addRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.Service
Add a 'restriction' element item.
addRightsHolder(Subject) - Method in class org.dataone.service.types.v1.Group
Add a 'rightsHolder' element item.
addService(Service) - Method in class org.dataone.service.types.v1.Services
Add a 'service' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.AccessRule
Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.Node
Add a 'subject' element item.
addSubject(Subject) - Method in class org.dataone.service.types.v1.SubjectList
Add a 'subject' element item.
addTraceDetail(String, String) - Method in exception org.dataone.service.exceptions.BaseException
Add new detailed trace information, storing it the value under a known key.
addUsed(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder
Adds a addUsed triple to the specified Resource Map
addUsed(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Add multiple addUsed triples to the specified Resource Map
addVersion(String) - Method in class org.dataone.service.types.v1.ObjectLocation
Add a 'version' element item.
addWasDerivedFrom(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder
Adds a wasDerivedFrom triple to the specified Resource Map
addWasDerivedFrom(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Add multiple wasDerivedFrom triples to the specified Resource Map
addWasGeneratedBy(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder
Adds a wasGeneratedBy triple to the specified Resource Map
addWasGeneratedBy(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Add multiple addWasGeneratedBy triples to the specified Resource Map
addWasInformedBy(ResourceMap, Identifier, Identifier) - Method in class org.dataone.ore.ProvResourceMapBuilder
Adds a addWasInformedBy triple to the specified Resource Map
addWasInformedBy(ResourceMap, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Add multiple addWasInformedBy triples to the specified Resource Map
afterRead(int) - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream
 
Agent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
agent - Static variable in class org.dataone.vocabulary.PROV
 
AgentClass - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
agreesWith - Static variable in class org.dataone.vocabulary.CITO_263
 
algorithm - Variable in class org.dataone.service.types.v1.Checksum
 
algorithm - Variable in class org.dataone.service.types.v1.ChecksumAlgorithmList
 
allow - Variable in class org.dataone.service.types.v1.AccessPolicy
 
allowedNode - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
 
allowedObjectFormat - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
 
alternative - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
archive(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
archive(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
sets the archived flag to true on an MN or CN
archive(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
archive(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
archive(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client
Perform an archive on an object in DataONE with the given D1Object on the authoritativeMemberNode contained in its systemMetadata.
archive(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
archive(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
archive(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
 
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
Deprecated.
the Authoritative Member Node is responsible for archiving content using SystemMetadata modifications
archive(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
 
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
Deprecated.
archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
Deprecated.
use updateSystemMetadata() to mark content as archived
archived - Variable in class org.dataone.service.types.v1.SystemMetadata
 
areChecksumsEqual(Checksum, Checksum) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
Returns true if and only if checksum1 and checksum2 are equal: Values are equal, algorithms are equal.
assembleUrl() - Method in class org.dataone.service.util.D1Url
 
Association - Static variable in class org.dataone.vocabulary.PROV
 
audience - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
augmentConfiguration(String) - Static method in class org.dataone.configuration.Settings
Include additional properties in the global configuration.
authenticate(HttpServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
 
AuthenticationTimeout - Exception in org.dataone.service.exceptions
The DataONE AuthenticationTimeout exception, raised when authentication operations exceed pre-established limits.
AuthenticationTimeout(String, String) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
 
AuthenticationTimeout(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
 
AuthenticationTimeout(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
 
AuthenticationTimeout(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
 
authoritativeMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata
 
authorizedClientSubjects(Session) - Static method in class org.dataone.service.types.v1.util.AuthUtils
Derived from Metacat implementation Creates a set of subjects represented in the session object, parsing both the subject of the session and the subjectInfo.
AuthTokenSession - Class in org.dataone.client.auth
A subclass of Session to hide the complexities of AuthTokens and connection management from users.
AuthTokenSession(String) - Constructor for class org.dataone.client.auth.AuthTokenSession
 
AuthUtils - Class in org.dataone.service.types.v1.util
 
AuthUtils() - Constructor for class org.dataone.service.types.v1.util.AuthUtils
 
AuthUtils - Class in org.dataone.service.types.v2.util
 
AuthUtils() - Constructor for class org.dataone.service.types.v2.util.AuthUtils
 
AutoCloseHttpClientInputStream - Class in org.dataone.client.types
Use this class to wrap input streams that come from HttpClients IFF if you plan to never use the HttpClient again.
AutoCloseHttpClientInputStream(InputStream, HttpClient) - Constructor for class org.dataone.client.types.AutoCloseHttpClientInputStream
 
available - Variable in class org.dataone.service.types.v1.Service
 
available - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 

B

BaseException - Exception in org.dataone.service.exceptions
A BaseException is the root of all DataONE service class exception messages.
BaseException(int, String, String) - Constructor for exception org.dataone.service.exceptions.BaseException
Construct a BaseException with the given code, detail code, and description.
BaseException(int, String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException
Construct a BaseException with the given code, detail code, pid, nodeId, description, and trace_information.
BaseException(int, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException
Construct a BaseException with the given code, detail code, description, and trace_information.
BaseException(int, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.BaseException
Construct a BaseException with the given code, detail code, description, and trace_information.
baseRequestConfig - Variable in class org.dataone.client.rest.HttpMultipartRestClient
 
baseURL - Variable in class org.dataone.service.types.v1.Node
 
baseURL - Variable in class org.dataone.service.types.v1.ObjectLocation
 
baseUrlMap - Variable in class org.dataone.client.v1.impl.SettingsContextNodeLocator
 
baseUrlMap - Variable in class org.dataone.client.v2.impl.SettingsContextNodeLocator
 
bibliographicCitation - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
BibliographicResource - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
BigIntegerMarshaller - Class in org.dataone.service.util
 
BigIntegerMarshaller() - Constructor for class org.dataone.service.util.BigIntegerMarshaller
 
blockedMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
 
buildAccessPolicy(HashMap<Subject, Set<Permission>>) - Static method in class org.dataone.service.types.v1.util.AccessUtil
creates an AccessPolicy instance where each contained AccessRule consists of one subject and that subject's permissions.
buildAccessRule(String, Permission) - Static method in class org.dataone.service.types.v1.TypeFactory
 
buildAccessRule(String, Permission[]) - Static method in class org.dataone.service.types.v1.TypeFactory
 
buildConnectionRegistry(X509Session) - Static method in class org.dataone.client.utils.HttpUtils
 
buildConnectionRegistry() - Static method in class org.dataone.client.utils.HttpUtils
 
buildD1KeepAliveStrategy(long) - Static method in class org.dataone.client.utils.HttpUtils
Builds a custom keep-alive strategy that uses the defaultKeepAliveTimeout value if one not returned in the response headers.
buildFormatIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for creating an ObjectFormatIdentifier.
buildIdentifier(String) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for creating an Identifier.
buildMinimalSystemMetadata(Identifier, InputStream, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.client.v1.types.D1TypeBuilder
Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.client.v2.types.D1TypeBuilder
Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v1.TypeFactory
Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildMinimalSystemMetadata(Identifier, InputStream, String, ObjectFormatIdentifier, Subject) - Static method in class org.dataone.service.types.v2.TypeFactory
Builds a minimal and 'typical' SystemMetadata object containing all of the required fields needed for submission to DataONE at time of create.
buildNode(Class<N>, MultipartRestClient, URI) - Static method in class org.dataone.client.D1NodeFactory
Creates a D1Node implementation for the given serviceClass.
buildNodeReference(String) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for creating a NodeReference.
buildSubject(String) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for creating a Subject.

C

CACHE_MAX_ENTRIES - Static variable in class org.dataone.client.utils.HttpUtils
 
CACHE_MAX_OBJECT_SIZE - Static variable in class org.dataone.client.utils.HttpUtils
 
CertificateManager - Class in org.dataone.client.auth
Import and manage certificates to be used for authentication against DataONE service providers.
CertificateManager() - Constructor for class org.dataone.client.auth.CertificateManager
CertificateManager is normally a singleton, but custom instances can be created if needed.
Channel - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
checkDataIntegrity() - Method in class org.dataone.client.v1.itk.D1Object
Compares the data to the values in the size and checksum SystemMetadata fields and returns true if they match.
checkDataIntegrity() - Method in class org.dataone.client.v2.itk.D1Object
Compares the data to the values in the size and checksum SystemMetadata fields and returns true if they match.
checkLength(List<String>) - Static method in class org.dataone.client.v1.itk.D1Object
Check that the all strings in the array have > 0 length.
checkLength(List<String>) - Static method in class org.dataone.client.v2.itk.D1Object
Check that the all strings in the array have > 0 length.
checkNotNull(List<Object>) - Static method in class org.dataone.client.v1.itk.D1Object
Check if any in a list of objects are null references.
checkNotNull(List<Object>) - Static method in class org.dataone.client.v2.itk.D1Object
Check if any in a list of objects are null references.
Checksum - Class in org.dataone.service.types.v1
Represents the value of a computed :term:`checksum` expressed as a hexadecimal formatted version of the message digest.
Checksum() - Constructor for class org.dataone.service.types.v1.Checksum
 
checksum - Variable in class org.dataone.service.types.v1.ObjectInfo
 
checksum - Variable in class org.dataone.service.types.v1.SystemMetadata
 
checksum(InputStream, String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
return a Checksum based on the input of the stream A useful technique when creating systemMetadata is to wrap the the inputStream in an org.apache.commons.io.input.CountingInputStream, to get the length of the content from the stream (after calling this method).
checksum(byte[], String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
produce a checksum for the given byte array
ChecksumAlgorithmList - Class in org.dataone.service.types.v1
Represents a list of :term:`checksum` algorithms.
ChecksumAlgorithmList() - Constructor for class org.dataone.service.types.v1.ChecksumAlgorithmList
 
ChecksumUtil - Class in org.dataone.service.types.v1.util
 
ChecksumUtil() - Constructor for class org.dataone.service.types.v1.util.ChecksumUtil
 
checkValidity() - Method in class org.dataone.client.auth.X509Session
 
checkValidity(Date) - Method in class org.dataone.client.auth.X509Session
 
CitationAct - Static variable in class org.dataone.vocabulary.CITO_263
 
cites - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsAuthority - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsDataSource - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsEvidence - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsMetadataDocument - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsPotentialSolution - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsRecommendedReading - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsRelated - Static variable in class org.dataone.vocabulary.CITO_263
 
citesAsSourceDocument - Static variable in class org.dataone.vocabulary.CITO_263
 
citesForInformation - Static variable in class org.dataone.vocabulary.CITO_263
 
CITO - Class in org.dataone.vocabulary
Provides select static terms for the current (v 2.6.3) CITO ontology used in DataONE constructs
CITO() - Constructor for class org.dataone.vocabulary.CITO
 
CITO_263 - Class in org.dataone.vocabulary
Provides select static terms for the CITO 2.6.3 ontology used in DataONE constructs
CITO_263() - Constructor for class org.dataone.vocabulary.CITO_263
 
classes - Static variable in class org.dataone.vocabulary.CITO_263
Classes defined in CITO
classes - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
Classes defined in Dublin Core Metadata Terms
classes - Static variable in class org.dataone.vocabulary.PROV
Classes defined in PROV (ProvONE-relevant subset)
cleanupTempFiles() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
calling this method attempts to delete the client-side temp files from the system.
clearAccessPolicy() - Method in class org.dataone.client.types.AccessPolicyEditor
 
clearAddedHeaders() - Method in class org.dataone.client.rest.RestClient
Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
clearAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Remove all 'additionalInfo' element items.
clearAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Remove all 'algorithm' element items.
clearAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Remove all 'allowedNode' element items.
clearAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Remove all 'allowedObjectFormat' element items.
clearAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
Remove all 'allow' element items.
clearBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Remove all 'blockedMemberNode' element items.
clearContactSubjectList() - Method in class org.dataone.service.types.v1.Node
Remove all 'contactSubject' element items.
clearDefaultTimeout() - Method in class org.dataone.client.rest.HttpMultipartRestClient
Clears the default timeout parameter: "D1Client.http.default.timeouts.ms".
clearDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
Remove all 'description' element items.
clearEmailList() - Method in class org.dataone.service.types.v1.Person
Remove all 'email' element items.
clearEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
Remove all 'equivalentIdentity' element items.
clearGivenNameList() - Method in class org.dataone.service.types.v1.Person
Remove all 'givenName' element items.
clearGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
Remove all 'group' element items.
clearHasMemberList() - Method in class org.dataone.service.types.v1.Group
Remove all 'hasMember' element items.
clearIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
Remove all 'isMemberOf' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v1.Log
Remove all 'logEntry' element items.
clearLogEntryList() - Method in class org.dataone.service.types.v2.Log
Remove all 'logEntry' element items.
clearMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
Remove all 'monitorInfo' element items.
clearNodeList() - Method in class org.dataone.service.types.v1.NodeList
Remove all 'node' element items.
clearNodeList() - Method in class org.dataone.service.types.v2.NodeList
Remove all 'node' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
Remove all 'objectFormat' element items.
clearObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList
Remove all 'objectFormat' element items.
clearObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
Remove all 'objectInfo' element items.
clearObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
Remove all 'objectLocation' element items.
clearOptionList() - Method in class org.dataone.service.types.v2.OptionList
Remove all 'option' element items.
clearPermissionList() - Method in class org.dataone.service.types.v1.AccessRule
Remove all 'permission' element items.
clearPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
Remove all 'person' element items.
clearPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Remove all 'preferredMemberNode' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.MediaType
Remove all 'property' element items.
clearPropertyList() - Method in class org.dataone.service.types.v2.Node
Remove all 'property' element items.
clearQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
Remove all 'queryEngine' element items.
clearQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Remove all 'queryField' element items.
clearReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
Remove all 'replica' element items.
clearRestrictionList() - Method in class org.dataone.service.types.v1.Service
Remove all 'restriction' element items.
clearRightsHolderList() - Method in class org.dataone.service.types.v1.Group
Remove all 'rightsHolder' element items.
clearServiceList() - Method in class org.dataone.service.types.v1.Services
Remove all 'service' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.Node
Remove all 'subject' element items.
clearSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
Remove all 'subject' element items.
clearVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
Remove all 'version' element items.
client - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
 
client - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
 
ClientIdentityManager - Class in org.dataone.client.auth
A client specific class to wrap certain CertificateManager methods, provide some introspection on the current client identity, as well as methods to manipulate identities.
ClientIdentityManager() - Constructor for class org.dataone.client.auth.ClientIdentityManager
 
ClientSideException - Exception in org.dataone.client.exception
A Client-Side exception is a wrapper for any implementation-specific exception thrown by external packages.
ClientSideException(String) - Constructor for exception org.dataone.client.exception.ClientSideException
 
ClientSideException(String, Throwable) - Constructor for exception org.dataone.client.exception.ClientSideException
Construct a ClientSideException with the message.
clone() - Method in class org.dataone.client.types.AccessPolicyEditor
 
clone(Object) - Static method in class org.dataone.service.types.v1.TypeFactory
Clone via marshalling and unmarshalling using the TypeMarshaller to ensure a DEEP copy and no shared object references.
cloneAccessPolicy(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
 
cloneAccessRule(AccessRule) - Static method in class org.dataone.service.types.v1.util.AccessUtil
 
cloneFormatIdentifier(ObjectFormatIdentifier) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for cloning an ObjectFormatIdentifier from another, such that they do not share any references for mutable properties.
cloneIdentifier(Identifier) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for cloning an Identifier from another, such that they do not share any references for mutable properties.
cloneNodeReference(NodeReference) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for cloning a NodeReference from another, such that they do not share any references for mutable properties.
cloneSubject(Subject) - Static method in class org.dataone.service.types.v1.TypeFactory
Factory method for cloning a Subject from another, such that they do not share any references for mutable properties.
close() - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream
Closes the proxied InputStream, and the HttpClient.
closeIdleConnections() - Method in class org.dataone.client.rest.HttpMultipartRestClient
Deprecated.
closeLoudly(InputStream) - Static method in class org.dataone.client.rest.MultipartD1Node
Utility method to be used in finally blocks for methods that have to close inputStreams.
CNAuthorization - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier2 Authorization interface.
CNAuthorization - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier2 Authorization interface.
CNCore - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier1 Core interface.
CNCore - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier1 Core interface.
CNDiagnostic - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier1 Diagnostic interface.
CNIdentity - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier2 Identity interface.
CNIdentity - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier2 Identity interface.
cnList - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
 
cnList - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
 
CNode - Interface in org.dataone.client.v1
An aggregated API that represents all of the possible services reachable at a Coordinating Node, defined in the org.dataone.service.cn package.
CNode - Interface in org.dataone.client.v2
An aggregated API that represents all of the possible services reachable at a Coordinating Node, defined in the org.dataone.service.cn package.
CNRead - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier1 Read interface.
CNRead - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier1 Read interface.
CNRegister - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier2 Registration interface.
CNRegister - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier2 Registration interface.
CNReplication - Interface in org.dataone.service.cn.v1
The DataONE CoordinatingNode Tier4 Replication interface.
CNReplication - Interface in org.dataone.service.cn.v2
The DataONE CoordinatingNode Tier4 Replication interface.
CNView - Interface in org.dataone.service.cn.v2
The DataONE Coordinating Node View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
Collection - Static variable in class org.dataone.vocabulary.PROV
 
compare(Group, Group) - Method in class org.dataone.service.types.v1.comparators.GroupNameComparator
Compares order based on the String groupName of two Group objects.
compare(Person, Person) - Method in class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator
Compares order based on the String familyNames of two Person object.
compare(SystemMetadata, SystemMetadata) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator
Compares the order based on the modified date of the two SystemMetadata objects.
compare(SystemMetadata, SystemMetadata) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator
Compares the order based on the uploaded date of the two SystemMetadata objects.
compareD1ServiceType(Map<String, Object>, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
This method will compare any number of dataone service-type objects of the same type to each other and return a report of every field where there is a difference.
comparePermissions(Permission, Collection<Permission>) - Static method in class org.dataone.service.types.v1.util.AuthUtils
a comparison algorithm for hierarchical permissions (WRITE implies READ, and CHANGE implies WRITE and READ).
compareSystemMetadata(SystemMetadata, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
Reports the properties of a systemMetadata object, one per line in xpath fashion.
compareTo(Object) - Method in class org.dataone.service.types.v1.Identifier
Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.NodeReference
Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
Compares order based on the String value of two objects of the same type.
compareTo(Object) - Method in class org.dataone.service.types.v1.Subject
Compares order based on the String value of two objects of the same type.
compiles - Static variable in class org.dataone.vocabulary.CITO_263
 
confirmMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
confirmMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
confirmMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
confirmMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
confirms - Static variable in class org.dataone.vocabulary.CITO_263
 
conformsTo - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
connectsTo - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
Constants - Class in org.dataone.service.util
 
Constants() - Constructor for class org.dataone.service.util.Constants
 
contactSubject - Variable in class org.dataone.service.types.v1.Node
 
contains(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Determine if an object with the given Identifier is already present in the local data store.
contains(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Determine if an object with the given Identifier is already present in the local data store.
containsAssertionFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
contributor - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
controlledBy - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
Controller - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
controls - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
convert(String) - Static method in enum org.dataone.service.types.v1.Event
 
convert(String) - Static method in enum org.dataone.service.types.v1.NodeState
 
convert(String) - Static method in enum org.dataone.service.types.v1.NodeType
 
convert(String) - Static method in enum org.dataone.service.types.v1.Permission
 
convert(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus
 
convertTypeFromType(Object, Class<T>) - Static method in class org.dataone.service.types.v2.TypeFactory
Intended for converting DataONE objects to an instance of another version, this method copies and converts based on common properties.
copyDataPackages(CNode, MNode, List<Identifier>) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload
Copy oreIdentifers from sourceCn to targetMN.
corrects - Static variable in class org.dataone.vocabulary.CITO_263
 
count - Variable in class org.dataone.service.types.v1.Slice
 
coverage - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
create(String) - Static method in class org.dataone.client.auth.X509Session
 
create(X509Certificate, PrivateKey, Session) - Static method in class org.dataone.client.auth.X509Session
 
create(X509Certificate, PrivateKey) - Static method in class org.dataone.client.auth.X509Session
 
create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
create(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client
Attempts to create the given D1Object on the originMemberNode contained in its SystemMetadata.
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
 
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
 
create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
 
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
Deprecated.
create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
 
createAccessPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of AccessPolicy
createAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<AccessPolicy>}
createAccessRule() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of AccessRule
createAccessRule(AccessRule) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<AccessRule>}
createAccessRule(Subject[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
creates an AccessRule containing the items specified in the parameters.
createAccessRule(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
creates an AccessRule containing the items specified in the parameters.
createChecksum() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Checksum
createChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Checksum>}
createChecksumAlgorithmList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ChecksumAlgorithmList
createChecksumAlgorithmList(ChecksumAlgorithmList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ChecksumAlgorithmList>}
created - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
createGroup(Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
createGroup(Session, Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
createGroup(Session, Group) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
createGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
createGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
createGroup() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Group
createGroup(Group) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Group>}
createHttpClient(X509Session) - Static method in class org.dataone.client.utils.HttpUtils
Creates an HttpClient configured with the X509 credentials.
createHttpClient(String) - Static method in class org.dataone.client.utils.HttpUtils
Creates an HttpClient configured with the authorization token credentials.
createIdentifier() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Identifier
createIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Identifier>}
createLog() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Log>}
createLog() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of Log
createLog(Log) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<Log>}
createLogEntry() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<LogEntry>}
createLogEntry() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of LogEntry
createLogEntry(LogEntry) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<LogEntry>}
createMediaType() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of MediaType
createMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<MediaType>}
createMediaTypeProperty() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of MediaTypeProperty
createNode() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Node>}
createNode() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of Node
createNode(Node) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<Node>}
createNodeList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<NodeList>}
createNodeList() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of NodeList
createNodeList(NodeList) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<NodeList>}
createNodeReference() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of NodeReference
createNodeReference(NodeReference) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<NodeReference>}
createNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of NodeReplicationPolicy
createNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<NodeReplicationPolicy>}
createObjectFormat() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ObjectFormat>}
createObjectFormat() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of ObjectFormat
createObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<ObjectFormat>}
createObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ObjectFormatList>}
createObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of ObjectFormatList
createObjectFormatList(ObjectFormatList) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<ObjectFormatList>}
createObjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectInfo
createObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ObjectInfo>}
createObjectList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectList
createObjectList(ObjectList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ObjectList>}
createObjectLocation() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectLocation
createObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ObjectLocationList
createObjectLocationList(ObjectLocationList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ObjectLocationList>}
createOptionList() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of OptionList
createOptionList(OptionList) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<OptionList>}
createPerson() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Person
createPerson(Person) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Person>}
createPing() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Ping
createProperty() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of Property
createProperty(Property) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<Property>}
createQueryEngineDescription() - Method in class org.dataone.service.types.v1_1.ObjectFactory
Create an instance of QueryEngineDescription
createQueryEngineDescription(QueryEngineDescription) - Method in class org.dataone.service.types.v1_1.ObjectFactory
Create an instance of JAXBElement<QueryEngineDescription>}
createQueryEngineList() - Method in class org.dataone.service.types.v1_1.ObjectFactory
Create an instance of QueryEngineList
createQueryEngineList(QueryEngineList) - Method in class org.dataone.service.types.v1_1.ObjectFactory
Create an instance of JAXBElement<QueryEngineList>}
createQueryField() - Method in class org.dataone.service.types.v1_1.ObjectFactory
Create an instance of QueryField
createReadWriteChangePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil
Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWriteChangePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil
Dead-simple convenience method for creating a standard permission set of Read and Write and ChangePermission
createReadWritePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil
Dead-simple convenience method for creating a standard permission set of Read and Write.
createReadWritePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil
Dead-simple convenience method for creating a standard permission set of Read and Write.
createReplica() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Replica
createReplica(Replica) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Replica>}
createReplicationPolicy() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ReplicationPolicy
createReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ReplicationPolicy>}
createResourceMap(Identifier, String) - Method in class org.dataone.ore.ResourceMapFactory
Create a resource map with the given identifier and aggregation title.
createResourceMap(Identifier, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ResourceMapFactory
creates a ResourceMap from the DataPackage representation.
createResourceMap(Identifier, Map<Identifier, List<Identifier>>, Map<Predicate, Map<Identifier, List<Identifier>>>) - Method in class org.dataone.ore.ResourceMapFactory
creates a ResourceMap from the DataPackage representation and a Map of other relationships.
createSchedule() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Schedule
createSchedule(Schedule) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Schedule>}
createService() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Service
createService(Service) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Service>}
createServiceMethodRestriction() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of ServiceMethodRestriction
createServiceMethodRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<ServiceMethodRestriction>}
createServices() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Services
createServices(Services) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Services>}
createSession() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Session
createSession(Session) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Session>}
createSingleRuleAccessPolicy(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
creates an AccessPolicy with a single AccessRule, and the AccessRule composed of Subjects and Permissions specified in the parameters.
createSlice() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Slice
createSubject() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Subject
createSubject(Subject) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Subject>}
createSubjectInfo() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of SubjectInfo
createSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<SubjectInfo>}
createSubjectList() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of SubjectList
createSubjectList(SubjectList) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<SubjectList>}
createSubjectList(String[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
creates a java-List of Subject objects from the given String array.
createSynchronization() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of Synchronization
createSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<Synchronization>}
createSystemMetadata() - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v1.ObjectFactory
Create an instance of JAXBElement<SystemMetadata>}
createSystemMetadata() - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of SystemMetadata
createSystemMetadata(SystemMetadata) - Method in class org.dataone.service.types.v2.ObjectFactory
Create an instance of JAXBElement<SystemMetadata>}
creator - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
credits - Static variable in class org.dataone.vocabulary.CITO_263
 
critiques - Static variable in class org.dataone.vocabulary.CITO_263
 

D

D1_SCHEMAS - Static variable in class org.dataone.service.util.TypeMarshaller
The java representation of the DataONE schemas used to validate unmarshalling
D1Client - Class in org.dataone.client.v1.itk
The D1Client class represents a client-side implementation of the DataONE Service API.
D1Client() - Constructor for class org.dataone.client.v1.itk.D1Client
 
D1Client - Class in org.dataone.client.v2.itk
The D1Client class represents a client-side implementation of the DataONE Service API.
D1Client() - Constructor for class org.dataone.client.v2.itk.D1Client
 
D1Node - Interface in org.dataone.client
The common non-service-API interface all MNodes or CNodes must implement.
D1NodeFactory - Class in org.dataone.client
D1NodeFactory contains a method for building CNode and MNode instances from a URI.
D1NodeFactory() - Constructor for class org.dataone.client.D1NodeFactory
 
D1Object - Class in org.dataone.client.v1.itk
A representation of an object that can be stored in the DataONE system.
D1Object() - Constructor for class org.dataone.client.v1.itk.D1Object
Construct a new D1Object, which is then populated with data and system metadata during the download process.
D1Object(Identifier, byte[], String, String, String) - Constructor for class org.dataone.client.v1.itk.D1Object
Deprecated.
D1Object(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v1.itk.D1Object
Deprecated.
D1Object(Identifier, DataSource, ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v1.itk.D1Object
Create an object that contains the given data bytes and with the given system metadata values.
D1Object - Class in org.dataone.client.v2.itk
A representation of an object that can be stored in the DataONE system.
D1Object() - Constructor for class org.dataone.client.v2.itk.D1Object
Construct a new D1Object, which is then populated with data and system metadata during the download process.
D1Object(Identifier, byte[], String, String, String) - Constructor for class org.dataone.client.v2.itk.D1Object
Deprecated.
D1Object(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v2.itk.D1Object
Deprecated.
D1Object(Identifier, DataSource, ObjectFormatIdentifier, Subject, NodeReference) - Constructor for class org.dataone.client.v2.itk.D1Object
Create an object that contains the given data bytes and with the given system metadata values.
D1TypeBuilder - Class in org.dataone.client.v1.types
 
D1TypeBuilder() - Constructor for class org.dataone.client.v1.types.D1TypeBuilder
 
D1TypeBuilder - Class in org.dataone.client.v2.types
 
D1TypeBuilder() - Constructor for class org.dataone.client.v2.types.D1TypeBuilder
 
D1Url - Class in org.dataone.service.util
 
D1Url(String, String) - Constructor for class org.dataone.service.util.D1Url
 
D1Url(String) - Constructor for class org.dataone.service.util.D1Url
 
D1Url() - Constructor for class org.dataone.service.util.D1Url
 
Data - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
DataoneEMLParser - Class in org.dataone.eml
 
DataPackage - Class in org.dataone.client.v1.itk
A DataPackage is a collection of interrelated data (science data, metadata) D1Objects plus their defined relationships (the ResourceMap object) DataPackage allows all of the science metadata, data objects, and system metadata associated with those objects to be accessed from a common place.
DataPackage() - Constructor for class org.dataone.client.v1.itk.DataPackage
Default constructor without identifier.
DataPackage(Identifier) - Constructor for class org.dataone.client.v1.itk.DataPackage
Construct a DataPackage using the given identifier to identify this package.
DataPackage - Class in org.dataone.client.v2.itk
A DataPackage is a collection of interrelated data (science data, metadata) D1Objects plus their defined relationships (the ResourceMap object) DataPackage allows all of the science metadata, data objects, and system metadata associated with those objects to be accessed from a common place.
DataPackage() - Constructor for class org.dataone.client.v2.itk.DataPackage
Default constructor without identifier.
DataPackage(Identifier) - Constructor for class org.dataone.client.v2.itk.DataPackage
Construct a DataPackage using the given identifier to identify this package.
date - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
dateAccepted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
dateCopyrighted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
dateLogged - Variable in class org.dataone.service.types.v1.LogEntry
 
dateLogged - Variable in class org.dataone.service.types.v2.LogEntry
 
DateMarshallingAdapter - Class in org.dataone.service.util
 
DateMarshallingAdapter() - Constructor for class org.dataone.service.util.DateMarshallingAdapter
 
dateSubmitted - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.ObjectInfo
 
dateSysMetadataModified - Variable in class org.dataone.service.types.v1.SystemMetadata
 
DateTimeMarshaller - Class in org.dataone.service.util
 
DateTimeMarshaller() - Constructor for class org.dataone.service.util.DateTimeMarshaller
 
dateUploaded - Variable in class org.dataone.service.types.v1.SystemMetadata
 
DC_TERMS - Class in org.dataone.vocabulary
Provides select static terms for the current Dublin Core Metadata Terms used in DataONE constructs
DC_TERMS() - Constructor for class org.dataone.vocabulary.DC_TERMS
 
DC_TERMS_080211 - Class in org.dataone.vocabulary
Provides select static terms for the 2008/02/11 Dublin Core Metadata Terms used in DataONE constructs
DC_TERMS_080211() - Constructor for class org.dataone.vocabulary.DC_TERMS_080211
 
decodeString(String) - Static method in class org.dataone.service.util.EncodingUtilities
Decode and return the specified pct-encoded String.
decodeXmlDataItems(String) - Static method in class org.dataone.service.util.EncodingUtilities
 
DEFAULT_KEEP_ALIVE_SECONDS - Static variable in class org.dataone.client.utils.HttpUtils
 
DEFAULT_TIMEOUT_PARAM - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
 
DEFAULT_TIMEOUT_VALUE - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
 
DefaultHttpMultipartRestClient - Class in org.dataone.client.rest
This subclass of HttpMultiparRestClient registers itself as an Observer of CertificateManager, and updates its Restclient's HttpClient with a new one using the CertificateManager's default certificate logic.
DefaultHttpMultipartRestClient() - Constructor for class org.dataone.client.rest.DefaultHttpMultipartRestClient
This MultipartRestClient implementation only uses the default or the set certificate location from CertificateManager to derive the Session.
defaultRestClient - Variable in class org.dataone.client.rest.MultipartD1Node
the D1Node instance adapter / connector to the RESTful service endpoints
defaultSession - Variable in class org.dataone.client.rest.MultipartD1Node
this represents the defaultSession to be used for establishing the SSL connection
defaultTlsPreferences - Static variable in class org.dataone.client.auth.CertificateManager
 
delete(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
delete(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
delete(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
delete(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
delete(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
delete(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
delete(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
 
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
 
delete(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
 
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
Deprecated.
delete(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
 
DELETE - Static variable in class org.dataone.service.util.Constants
HTTP Verb DELETE
deleteReplicationMetadata(Identifier, NodeReference, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
deleteReplicationMetadata(Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication
 
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v1.CNReplication
Deprecated.
deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in interface org.dataone.service.cn.v2.CNReplication
 
denyMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
denyMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
denyMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
denyMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
denyMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
derides - Static variable in class org.dataone.vocabulary.CITO_263
 
describe(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
describe(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
describe(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
describe(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
describe(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
describe(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
describe(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
 
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
 
describe(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
describe(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
DescribeResponse - Class in org.dataone.service.types.v1
The DataONE Type to represent the metadata returned from a 'describe' request.
DescribeResponse(ObjectFormatIdentifier, BigInteger, Date, Checksum, BigInteger) - Constructor for class org.dataone.service.types.v1.DescribeResponse
instantiate a DescribeResponse object
describes - Static variable in class org.dataone.vocabulary.CITO_263
 
description - Variable in class org.dataone.service.types.v1.Node
 
description - Variable in class org.dataone.service.types.v1_1.QueryField
 
description - Variable in class org.dataone.service.types.v2.OptionList
 
description - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
deserializeAndThrowException(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
 
deserializeAndThrowException(InputStream, String, Integer, String) - Static method in class org.dataone.service.util.ExceptionHandler
Throw the exception that is contained in an HTTP response A response from an HTTP call may be determined to have an error.
deserializeBigInteger(String) - Static method in class org.dataone.service.util.BigIntegerMarshaller
convert a String to a BigInteger The String must be greater or equal to 0
deserializeDateToUTC(String) - Static method in class org.dataone.service.util.DateTimeMarshaller
convert a String to GMT date The STring must either be ISO 8601 compliant or http://www.w3.org/Protocols/rfc2616/rfc2616-sec3.html#sec3.3.1 compliant
deserializeHeadersAndThrowException(int, Header[]) - Static method in class org.dataone.service.util.ExceptionHandler
 
deserializePackage(String) - Static method in class org.dataone.client.v1.itk.DataPackage
Deserialize an ORE resourceMap by parsing it, extracting the associated package identifier, and the list of metadata and data objects aggregated in the ORE Map.
deserializePackage(String) - Static method in class org.dataone.client.v2.itk.DataPackage
Deserialize an ORE resourceMap by parsing it, extracting the associated package identifier, and the list of metadata and data objects aggregated in the ORE Map.
deserializeResourceMap(InputStream) - Method in class org.dataone.ore.ResourceMapFactory
Deserialize the inputStream into a ResourceMap using the standard OREParserFactory settings.
deserializeResourceMap(InputStream, boolean) - Method in class org.dataone.ore.ResourceMapFactory
Deserialize the inputStream into a ResourceMap either literally (only asserted statements present), or including inferred statements.
deserializeServiceType(Class<T>, InputStream) - Method in class org.dataone.client.rest.MultipartD1Node
deserialize an object of type from the inputstream This is a wrapper method of the standard common Unmarshalling method that recasts exceptions to ServiceFailure
deserializeServiceType(Class<T>, InputStream) - Static method in class org.dataone.service.util.ExceptionHandler
Wrapper for Marshalling method that recasts exceptions to ServiceFailure;
deserializeXml(InputStream, String) - Static method in class org.dataone.service.util.ExceptionHandler
 
designatedCN - Variable in class org.dataone.client.v1.impl.SettingsContextNodeLocator
 
designatedCN - Variable in class org.dataone.client.v2.impl.SettingsContextNodeLocator
 
disagreesWith - Static variable in class org.dataone.vocabulary.CITO_263
 
discusses - Static variable in class org.dataone.vocabulary.CITO_263
 
displayCertificate(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager
Show details of an X509 certificate, printing the information to STDOUT.
disputes - Static variable in class org.dataone.vocabulary.CITO_263
 
distributionMetadata - Variable in class org.dataone.eml.EMLDocument
 
DistributionMetadata(String, String) - Constructor for class org.dataone.eml.EMLDocument.DistributionMetadata
 
DistributionMetadata() - Constructor for class org.dataone.eml.EMLDocument.DistributionMetadata
 
Document - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
documents - Static variable in class org.dataone.vocabulary.CITO_263
 
doDeleteRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doDeleteRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doDeleteRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient
send a Delete request to the resource and get the response
doGetRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doGetRequest(String, Integer, boolean) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doGetRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
Perform an HTTP GET request, setting the headers first and parsing /filtering exceptions to the exception stream on the response into their respective java instances.
doGetRequest(String, Integer, boolean) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doGetRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient
send a GET request to the resource and get the response
doGetRequestForHeaders(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doGetRequestForHeaders(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doHeadRequest(String, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doHeadRequest(String, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doHeadRequest(String, RequestConfig) - Method in class org.dataone.client.rest.RestClient
send a Head request to the resource and get the response
doPostRequest(String, SimpleMultipartEntity, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doPostRequest(String, SimpleMultipartEntity, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doPostRequest(String, SimpleMultipartEntity, RequestConfig) - Method in class org.dataone.client.rest.RestClient
send a POST request to the resource and get the response
doPutRequest(String, SimpleMultipartEntity, Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
doPutRequest(String, SimpleMultipartEntity, Integer) - Method in interface org.dataone.client.rest.MultipartRestClient
 
doPutRequest(String, SimpleMultipartEntity, RequestConfig) - Method in class org.dataone.client.rest.RestClient
send a PUT request to the resource and get the response
download(Identifier) - Static method in class org.dataone.client.v1.itk.D1Object
Contact D1 services to download the systemMetadata and data.
download(Identifier) - Static method in class org.dataone.client.v1.itk.DataPackage
Download the resource map
download(Identifier) - Static method in class org.dataone.client.v2.itk.D1Object
Contact D1 services to download the systemMetadata and data.
download(Identifier) - Static method in class org.dataone.client.v2.itk.DataPackage
Download the resource map

E

echoCredentials(Session) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
echoCredentials(Session) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
 
echoIndexedObject(Session, String, SystemMetadata, InputStream) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
echoIndexedObject(Session, String, SystemMetadata, InputStream) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
 
echoSystemMetadata(Session, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
echoSystemMetadata(Session, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNDiagnostic
 
educationLevel - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
email - Variable in class org.dataone.service.types.v1.Person
 
EMLDocument - Class in org.dataone.eml
 
EMLDocument() - Constructor for class org.dataone.eml.EMLDocument
constructor
EMLDocument.DistributionMetadata - Class in org.dataone.eml
sub class to contain the distribution metadata
encodeUrlFragment(String) - Static method in class org.dataone.service.util.EncodingUtilities
Encode the URL fragment section following RFC 3986.
encodeUrlPathSegment(String) - Static method in class org.dataone.service.util.EncodingUtilities
Encode a URL path segment as required by the URL specifications ( RFC 3986 and RFC 1738 section 3.3).
encodeUrlQuerySegment(String) - Static method in class org.dataone.service.util.EncodingUtilities
Encode a URL query segment following the item-list / key-value convention: query = "?" q-item *( "&" q-item) q=item = q-segment [ "=" q-segment ]
EncodingUtilities - Class in org.dataone.service.util
 
EncodingUtilities() - Constructor for class org.dataone.service.util.EncodingUtilities
 
entryId - Variable in class org.dataone.service.types.v1.LogEntry
 
entryId - Variable in class org.dataone.service.types.v2.LogEntry
 
equals(Object) - Method in class org.dataone.service.types.v1.comparators.GroupNameComparator
Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator
Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator
Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator
Indicates whether some other object is "equal to" this comparator.
equals(Object) - Method in class org.dataone.service.types.v1.Identifier
1 value 2 Value 3 String 4 (java.lang.String) 5 Identifier value is a string, override equals of Identifier.
equals(Object) - Method in class org.dataone.service.types.v1.NodeReference
1 value 2 Value 3 String 4 (java.lang.String) 5 NodeReference value is a string, override equals of NodeReference.
equals(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
1 value 2 Value 3 String 4 (java.lang.String) 5 ObjectFormatIdentifier value is a string, override equals of ObjectFormatIdentifier.
equals(Object) - Method in class org.dataone.service.types.v1.Subject
Value is a string, override equals of Subject.
equalsDN(String, String) - Method in class org.dataone.client.auth.CertificateManager
Compare Subject DNs for equality
equivalentIdentity - Variable in class org.dataone.service.types.v1.Person
 
Event - Enum in org.dataone.service.types.v1
The controlled list of events that are logged, which will include *create*, *update*, *delete*, *read*, *replicate*, synchronization_failed* and *replication_failed* events.
event - Variable in class org.dataone.service.types.v1.LogEntry
 
event - Variable in class org.dataone.service.types.v2.LogEntry
 
ExampleClient - Class in org.dataone.client.v1.examples
ExampleClient is a command-line class that can be run to illustrate usage patterns of the d1_libclient_java library methods and services.
ExampleClient() - Constructor for class org.dataone.client.v1.examples.ExampleClient
 
ExampleDataPackageUpload - Class in org.dataone.client.v1.examples
Utility for uploading data packages to a MN.
ExampleDataPackageUpload() - Constructor for class org.dataone.client.v1.examples.ExampleDataPackageUpload
 
ExampleObjectDownload - Class in org.dataone.client.v1.examples
 
ExampleObjectDownload() - Constructor for class org.dataone.client.v1.examples.ExampleObjectDownload
 
ExceptionalInputStream - Class in org.dataone.service.util
This is a special purpose subclass of PushbackInputStream useful for determining whether or not an input stream contains a Dataone type, a Dataone exception, or other.
ExceptionalInputStream(InputStream) - Constructor for class org.dataone.service.util.ExceptionalInputStream
 
ExceptionHandler - Class in org.dataone.service.util
uniform deserialization of DataONE Exceptions that may be rethrown
ExceptionHandler() - Constructor for class org.dataone.service.util.ExceptionHandler
 
ExceptionUtils - Class in org.dataone.client.utils
 
ExceptionUtils() - Constructor for class org.dataone.client.utils.ExceptionUtils
 
Execution - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
extendS - Static variable in class org.dataone.vocabulary.CITO_263
 
extension - Variable in class org.dataone.service.types.v2.ObjectFormat
 
extent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 

F

familyName - Variable in class org.dataone.service.types.v1.Person
 
FileFormat - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
fileName - Variable in class org.dataone.service.types.v2.SystemMetadata
 
filterErrors(HttpResponse) - Static method in class org.dataone.service.util.ExceptionHandler
 
filterErrors(HttpResponse, boolean) - Static method in class org.dataone.service.util.ExceptionHandler
This method maps an HttpResponse onto an InputStream by consuming the response headers and throwing an exception when appropriate.
filterErrors(InputStream, boolean, String) - Static method in class org.dataone.service.util.ExceptionHandler
 
filterErrorsHeader(HttpResponse, String) - Static method in class org.dataone.service.util.ExceptionHandler
will filter serialized errors coming from the HEAD request by deserializing them and putting on the exception thread(?).
finalize() - Method in class org.dataone.client.types.AutoCloseHttpClientInputStream
 
findEquivalentSubjects(SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils
Look for the equivalent authorization subjects for a given subject which can be either a person or a group.
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Returns the first node with identifier of the provided node reference
findNode(NodeList, NodeReference) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Returns the first node with identifier of the provided node reference
findPersonsSubjects(Set<Subject>, SubjectInfo, Subject) - Static method in class org.dataone.service.types.v1.util.AuthUtils
A recursive method to traverse the equivalent-identity relationships and to handle the transitive nature of group membership and verified status.
FMT_HTML - Static variable in exception org.dataone.service.exceptions.BaseException
 
FMT_JSON - Static variable in exception org.dataone.service.exceptions.BaseException
 
FMT_XML - Static variable in exception org.dataone.service.exceptions.BaseException
 
format - Variable in class org.dataone.eml.EMLDocument
 
format - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
formatId - Variable in class org.dataone.service.types.v1.ObjectFormat
 
formatId - Variable in class org.dataone.service.types.v1.ObjectInfo
 
formatId - Variable in class org.dataone.service.types.v1.SystemMetadata
 
formatName - Variable in class org.dataone.service.types.v1.ObjectFormat
 
formatType - Variable in class org.dataone.service.types.v1.ObjectFormat
 
Frequency - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 

G

generateIdentifier(String, String) - Method in class org.dataone.client.rest.MultipartD1Node
 
generateIdentifier(Session, String, String) - Method in class org.dataone.client.rest.MultipartD1Node
 
generateIdentifier(String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
generateIdentifier(Session, String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
generateIdentifier(String, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
generateIdentifier(Session, String, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
generateIdentifier(String, String) - Method in interface org.dataone.service.cn.v1.CNCore
 
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNCore
 
generateIdentifier(String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
 
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
Deprecated.
generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
 
Generation - Static variable in class org.dataone.vocabulary.PROV
 
get(Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
Get the resource with the specified pid.
get(Session, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
Get the resource with the specified pid.
get(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
get(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
get(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
get(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
get(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Get the D1Object associated with a given Identifier from the local data store.
get(Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
get(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
get(Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
get(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
get(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Get the D1Object associated with a given Identifier from the local data store.
get(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
InputStream is the Java native version of D1's OctetStream
get(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
InputStream is the Java native version of D1's OctetStream
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
InputStream is the Java native version of D1's OctetStream
GET - Static variable in class org.dataone.service.util.Constants
HTTP Verb GET
getAccessPolicy() - Method in class org.dataone.client.types.AccessPolicyEditor
gets the AccessPolicy being manipulated
getAccessPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'accessPolicy' element value.
getAccessPolicyEditor() - Method in class org.dataone.client.v1.itk.D1Object
Provides an object to manipulate this D1Object's accessPolicy
getAccessPolicyEditor() - Method in class org.dataone.client.v2.itk.D1Object
Provides an object to manipulate this D1Object's accessPolicy
getAddedHeaders() - Method in class org.dataone.client.rest.HttpMultipartRestClient
Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
getAddedHeaders() - Method in class org.dataone.client.rest.RestClient
Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
getAdditionalInfo(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get 'additionalInfo' element item by position.
getAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the list of 'additionalInfo' element items.
getAlgorithm() - Method in class org.dataone.service.types.v1.Checksum
Get the 'algorithm' attribute value.
getAlgorithm(int) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Get 'algorithm' element item by position.
getAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Get the list of 'algorithm' element items.
getAllow(int) - Method in class org.dataone.service.types.v1.AccessPolicy
Get 'allow' element item by position.
getAllowedNode(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get 'allowedNode' element item by position.
getAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the list of 'allowedNode' element items.
getAllowedObjectFormat(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get 'allowedObjectFormat' element item by position.
getAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the list of 'allowedObjectFormat' element items.
getAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
Get the list of 'allow' element items.
getArchived() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'archived' element value.
getAssembledQueryString() - Method in class org.dataone.service.util.D1Url
 
getAsyncContext() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getAttributeNames() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getAuthoritativeMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'authoritativeMemberNode' element value.
getAuthToken() - Method in class org.dataone.client.auth.AuthTokenSession
 
getAuthType() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getAvailable() - Method in class org.dataone.service.types.v1.Service
Get the 'available' attribute value.
getBaseURL() - Method in class org.dataone.service.types.v1.Node
Get the 'baseURL' element value.
getBaseURL() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the 'baseURL' element value.
getBaseUrl() - Method in class org.dataone.service.util.D1Url
 
getBlockedMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get 'blockedMemberNode' element item by position.
getBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the list of 'blockedMemberNode' element items.
getByPosition(int) - Method in class org.dataone.client.types.ObsoletesChain
 
getCACert(String) - Method in class org.dataone.client.auth.CertificateManager
Find the supplemental CA certificate to be used to validate user (peer) <
getCapabilities() - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartD1Node
 
getCapabilities() - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getCapabilities() - Method in interface org.dataone.service.cn.v2.CNCore
 
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
 
getCapabilities() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
 
getCertificate(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager
Get the client certificate from the request object
getCertificate() - Method in class org.dataone.client.auth.X509Session
 
getCertificateExpiration() - Static method in class org.dataone.client.auth.ClientIdentityManager
 
getCertificateLocation() - Method in class org.dataone.client.auth.CertificateManager
 
getCharacterEncoding() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getChecksum(Identifier, String) - Method in class org.dataone.client.rest.MultipartD1Node
 
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.rest.MultipartD1Node
This method can handle both the MN and CN method, although the CN overriding method will need to recast the InvalidRequest exception and use 'null' for the checksumAlgorithm param
getChecksum(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getChecksum(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getChecksum(Identifier, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getChecksum(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getChecksum(Identifier, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getChecksum(Session, Identifier, String) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getChecksum(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
 
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
 
getChecksum(Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
getChecksum() - Method in class org.dataone.service.types.v1.ObjectInfo
Get the 'checksum' element value.
getChecksum() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'checksum' element value.
getCN() - Static method in class org.dataone.client.v1.itk.D1Client
Get the cached CNode object for calling Coordinating Node services.
getCN(Session) - Static method in class org.dataone.client.v1.itk.D1Client
Deprecated.
broken functionality, and unused. use getCN() or getCN(baseUrl) instead
getCN(String) - Static method in class org.dataone.client.v1.itk.D1Client
Returns a Coordinating Node using the base service URL to look up the node in the existing environment.
getCN() - Static method in class org.dataone.client.v2.itk.D1Client
Get the cached CNode object for calling Coordinating Node services.
getCN(Session) - Static method in class org.dataone.client.v2.itk.D1Client
Deprecated.
broken functionality, and unused. use getCN() or getCN(baseUrl) instead
getCN(String) - Static method in class org.dataone.client.v2.itk.D1Client
Returns a Coordinating Node using the base service URL to look up the node in the existing environment.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil
Returns an array of subjects listed as CN's in the nodelist or in a properties file.
getCNode() - Method in class org.dataone.client.NodeLocator
This method should return the favored CNode, so that a CN can be obtained without NodeReference or serviceBaseUrl.
getCNode() - Method in class org.dataone.client.v1.impl.NodeListNodeLocator
 
getCNode() - Method in class org.dataone.client.v1.impl.SettingsContextNodeLocator
 
getCNode() - Method in class org.dataone.client.v2.impl.NodeListNodeLocator
 
getCNode() - Method in class org.dataone.client.v2.impl.SettingsContextNodeLocator
 
getCode() - Method in exception org.dataone.service.exceptions.BaseException
 
getConfiguration() - Static method in class org.dataone.configuration.Settings
Get a Configuration interface that combines all resources found under all of the org.dataone.configuration/config.xml files from all application packages.
getContactSubject(int) - Method in class org.dataone.service.types.v1.Node
Get 'contactSubject' element item by position.
getContactSubjectList() - Method in class org.dataone.service.types.v1.Node
Get the list of 'contactSubject' element items.
getContent_Length() - Method in class org.dataone.service.types.v1.DescribeResponse
get the Size of the object in bytes, the value of SystemMetadata.size from SystemMetadata.
getContentLength() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getContentType() - Method in class org.dataone.client.types.InputStreamDataSource
get the content type of this stream
getContentType() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getContextPath() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getCookies() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getCount() - Method in class org.dataone.service.types.v1.Log
Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.MonitorInfo
Get the 'count' element value.
getCount() - Method in class org.dataone.service.types.v1.ObjectFormatList
Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.ObjectList
Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v1.Slice
Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.Log
Get the 'count' attribute value.
getCount() - Method in class org.dataone.service.types.v2.ObjectFormatList
Get the 'count' attribute value.
getCurrentIdentity() - Static method in class org.dataone.client.auth.ClientIdentityManager
a simple encapsulation to return the client's (current) identity from the CertificateManager as a dataone Subject
getCurrentSession() - Static method in class org.dataone.client.auth.ClientIdentityManager
a simple encapsulation to return a session object built from the CertificateManager
getD1SubtypesListing(Object) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
A recursive method that returns a map of key value pairs that correspond to the property paths (keys) and values of the object passed in.
getD1SubtypesListing(String, Object, boolean, boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
 
getData() - Method in class org.dataone.client.v1.itk.D1Object
Deprecated. 
getData() - Method in class org.dataone.client.v2.itk.D1Object
Deprecated. 
getDataONE_Checksum() - Method in class org.dataone.service.types.v1.DescribeResponse
get The algorithm (SystemMetadata.algorithm) and Checksum (SystemMetadata.checksum) of the object being examined, drawn from the SystemMetadata.
getDataONE_ObjectFormatIdentifier() - Method in class org.dataone.service.types.v1.DescribeResponse
get The value of the SystemMetadata.objectFormatIdentifier entry available in the SystemMetadata.
getDataSource() - Method in class org.dataone.client.v1.itk.D1Object
get the DataSource representing the data
getDataSource() - Method in class org.dataone.client.v2.itk.D1Object
get the DataSource representing the data
getDate() - Method in class org.dataone.service.types.v1.MonitorInfo
Get the 'date' element value.
getDateHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getDateLogged() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'dateLogged' element value.
getDateLogged() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'dateLogged' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.ObjectInfo
Get the 'dateSysMetadataModified' element value.
getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'dateSysMetadataModified' element value.
getDateUploaded() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'dateUploaded' element value.
getDescription() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
Returns a concise description of the existing file parts, as comma-separated key-value pairs.
getDescription() - Method in exception org.dataone.service.exceptions.BaseException
 
getDescription() - Method in class org.dataone.service.types.v1.Node
Get the 'description' element value.
getDescription(int) - Method in class org.dataone.service.types.v1_1.QueryField
Get 'description' element item by position.
getDescription() - Method in class org.dataone.service.types.v2.OptionList
Get the 'description' attribute value.
getDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
Get the list of 'description' element items.
getDetail_code() - Method in exception org.dataone.service.exceptions.BaseException
 
getDispatcherType() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getDocumentedBy(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Convenience function for working with the metadata map.
getDocumentedBy(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Convenience function for working with the metadata map.
getEmail(int) - Method in class org.dataone.service.types.v1.Person
Get 'email' element item by position.
getEmailList() - Method in class org.dataone.service.types.v1.Person
Get the list of 'email' element items.
getEntryId() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'entryId' element value.
getEntryId() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'entryId' element value.
getEquivalentIdentity(int) - Method in class org.dataone.service.types.v1.Person
Get 'equivalentIdentity' element item by position.
getEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
Get the list of 'equivalentIdentity' element items.
getEvent() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'event' element value.
getEvent() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'event' element value.
getExtension(String) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo
Look up the extension for an ObjectFormat based on the format identifier for that ObjectFormat.
getExtension(ObjectFormat) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo
Look up the extension for an ObjectFormat.
getExtension() - Method in class org.dataone.service.types.v2.ObjectFormat
Get the 'extension' element value.
getExtensionValue(X509Certificate, String) - Method in class org.dataone.client.auth.CertificateManager
Retrieves the extension value given by the OID
getFamilyName() - Method in class org.dataone.service.types.v1.Person
Get the 'familyName' element value.
getFileName() - Method in class org.dataone.service.types.v2.SystemMetadata
Get the 'fileName' element value.
getFmtId() - Method in class org.dataone.client.v1.itk.D1Object
Deprecated.
getFmtId() - Method in class org.dataone.client.v2.itk.D1Object
Deprecated.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
Return the ObjectFormat for the given ObjectFormatIdentifier, obtained either from a client-cached ObjectFormatList from the ObjectFormatCache, or from a call to the CN.
getFormat(String) - Method in class org.dataone.client.v2.formats.ObjectFormatCache
Deprecated.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v2.formats.ObjectFormatCache
Lookup and return the format specified by the Identifier.
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
Return the ObjectFormat for the given ObjectFormatIdentifier, obtained either from a client-cached ObjectFormatList from the ObjectFormatCache, or from a call to the CN.
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v1.CNCore
 
getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v2.CNCore
 
getFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
Get the object format based on the given identifier.
getFormatId() - Method in class org.dataone.client.v1.itk.D1Object
 
getFormatId() - Method in class org.dataone.client.v2.itk.D1Object
 
getFormatId() - Method in class org.dataone.service.types.v1.ObjectFormat
Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.ObjectInfo
Get the 'formatId' element value.
getFormatId() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'formatId' element value.
getFormatName() - Method in class org.dataone.service.types.v1.ObjectFormat
Get the 'formatName' element value.
getFormatType() - Method in class org.dataone.service.types.v1.ObjectFormat
Get the 'formatType' element value.
getGivenName(int) - Method in class org.dataone.service.types.v1.Person
Get 'givenName' element item by position.
getGivenNameList() - Method in class org.dataone.service.types.v1.Person
Get the list of 'givenName' element items.
getGroup(int) - Method in class org.dataone.service.types.v1.SubjectInfo
Get 'group' element item by position.
getGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
Get the list of 'group' element items.
getGroupName() - Method in class org.dataone.service.types.v1.Group
Get the 'groupName' element value.
getHasMember(int) - Method in class org.dataone.service.types.v1.Group
Get 'hasMember' element item by position.
getHasMemberList() - Method in class org.dataone.service.types.v1.Group
Get the list of 'hasMember' element items.
getHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getHeaderNames() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getHeaders(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getHour() - Method in class org.dataone.service.types.v1.Schedule
Get the 'hour' attribute value.
getHttpClient() - Method in class org.dataone.client.auth.AuthTokenSession
 
getHttpClient() - Method in class org.dataone.client.auth.X509Session
 
getHttpClient() - Method in class org.dataone.client.rest.HttpMultipartRestClient
Gets the HttpClient instance used to make the connection
getHttpClient() - Method in class org.dataone.client.rest.RestClient
Gets the DefaultHttpClient instance used to make the connection
getHttpClientBuilder(X509Session) - Static method in class org.dataone.client.utils.HttpUtils
Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(X509Session, Boolean) - Static method in class org.dataone.client.utils.HttpUtils
Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(String) - Static method in class org.dataone.client.utils.HttpUtils
Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getHttpClientBuilder(String, Boolean) - Static method in class org.dataone.client.utils.HttpUtils
Returns an HttpClientBuilder with the DataONE-standard ConnectionManager configuration specified.
getIdentifier() - Method in class org.dataone.client.v1.itk.D1Object
 
getIdentifier() - Method in class org.dataone.client.v2.itk.D1Object
 
getIdentifier() - Method in exception org.dataone.service.exceptions.BaseException
 
getIdentifier() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.Node
Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectInfo
Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocationList
Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'identifier' element value.
getIdentifier() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'identifier' element value.
getInputStream() - Method in class org.dataone.client.types.InputStreamDataSource
get the InputStream from this data source
getInputStream() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getInstance() - Static method in class org.dataone.client.auth.CertificateManager
Return the singleton instance of this CertificateManager, creating it if needed.
getInstance() - Static method in class org.dataone.client.utils.HttpConnectionMonitorService
 
getInstance() - Static method in class org.dataone.client.v2.formats.ObjectFormatCache
Create the object format cache instance if it hasn't already been created.
getInstance() - Static method in class org.dataone.eml.DataoneEMLParser
singleton accessor
getInstance() - Static method in class org.dataone.ore.ResourceMapFactory
Returns the singleton instance for this class.
getInstance() - Static method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
Get the instance of the ObjectFormatServiceImpl that has been instantiated, or instantiate one if it has not been already.
getIntHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getIpAddress() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'ipAddress' element value.
getIpAddress() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'ipAddress' element value.
getIsMemberOf(int) - Method in class org.dataone.service.types.v1.Person
Get 'isMemberOf' element item by position.
getIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
Get the list of 'isMemberOf' element items.
getJAXBContext(Class) - Static method in class org.dataone.service.util.TypeMarshaller
A method to manage JAXB data type contexts, as they are expensive to build and destroy.
getKey() - Method in class org.dataone.service.types.v2.OptionList
Get the 'key' attribute value.
getKey() - Method in class org.dataone.service.types.v2.Property
Get the 'key' attribute value.
getLast_Modified() - Method in class org.dataone.service.types.v1.DescribeResponse
get DateTime value that indicates when the system metadata associated with the object was last modified, i.e.
getLastCompleteHarvest() - Method in class org.dataone.service.types.v1.Synchronization
Get the 'lastCompleteHarvest' element value.
getLastHarvested() - Method in class org.dataone.service.types.v1.Synchronization
Get the 'lastHarvested' element value.
getLastRefreshDate() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
Returns the date of the last refresh from the CN.
getLastSuccess() - Method in class org.dataone.service.types.v1.Ping
Get the 'lastSuccess' attribute value.
getLastTempfile() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
 
getLatestRequestUrl() - Method in interface org.dataone.client.D1Node
A method to provide information about the latestRequest from the D1Node
getLatestRequestUrl() - Method in class org.dataone.client.rest.HttpMultipartRestClient
Gets the string representation of the current Thread's latest http request via this instance.
getLatestRequestUrl(Thread) - Method in class org.dataone.client.rest.HttpMultipartRestClient
Gets the string representation of the specified Thread's latest http request via this instance.
getLatestRequestUrl() - Method in class org.dataone.client.rest.MultipartD1Node
Useful for debugging to see what the last call was
getLatestRequestUrl() - Method in interface org.dataone.client.rest.MultipartRestClient
 
getLatestRequestUrl() - Method in class org.dataone.client.rest.RestClient
returns a description of the latest rest call made by this instance.
getLatestRequestUrl(Thread) - Method in class org.dataone.client.rest.RestClient
To support cross thread retrieval of request info, a parameterized form of this method.
getLatestVersion() - Method in class org.dataone.client.types.ObsoletesChain
 
getLocalAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getLocale() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getLocales() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getLocalName() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getLocalPort() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getLogEntry(int) - Method in class org.dataone.service.types.v1.Log
Get 'logEntry' element item by position.
getLogEntry(int) - Method in class org.dataone.service.types.v2.Log
Get 'logEntry' element item by position.
getLogEntryList() - Method in class org.dataone.service.types.v1.Log
Get the list of 'logEntry' element items.
getLogEntryList() - Method in class org.dataone.service.types.v2.Log
Get the list of 'logEntry' element items.
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
 
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNCore
 
getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
 
getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
Deprecated.
getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNCore
 
getMaxObjectSize() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the 'maxObjectSize' element value.
getMday() - Method in class org.dataone.service.types.v1.Schedule
Get the 'mday' attribute value.
getMediaType() - Method in class org.dataone.service.types.v2.ObjectFormat
Get the 'mediaType' element value.
getMediaType() - Method in class org.dataone.service.types.v2.SystemMetadata
Get the 'mediaType' element value.
getMetadataMap() - Method in class org.dataone.client.v1.itk.DataPackage
Get a map of the metadata members of the resource map and the associated data they document.
getMetadataMap() - Method in class org.dataone.client.v2.itk.DataPackage
Get a map of the metadata members of the resource map and the associated data they document.
getMethod() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getMethodName() - Method in class org.dataone.service.types.v1.ServiceMethodRestriction
Get the 'methodName' attribute value.
getMimeType(String) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo
Look up the mime type for an ObjectFormat based on the format identifier for that ObjectFormat.
getMimeType(ObjectFormat) - Method in class org.dataone.client.v2.formats.ObjectFormatInfo
Look up the mime type for an ObjectFormat.
getMin() - Method in class org.dataone.service.types.v1.Schedule
Get the 'min' attribute value.
getMinimalRefreshInterval() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
Returns the minimal refresh interval (seconds)
getMN(String) - Static method in class org.dataone.client.v1.itk.D1Client
Returns a Member Node using the base service URL for the node.
getMN(NodeReference) - Static method in class org.dataone.client.v1.itk.D1Client
Return an MNode using the nodeReference for the member node.
getMN(String) - Static method in class org.dataone.client.v2.itk.D1Client
Returns a Member Node using the base service URL for the node.
getMN(NodeReference) - Static method in class org.dataone.client.v2.itk.D1Client
Return an MNode using the nodeReference for the member node.
getModel() - Method in class org.dataone.ore.ProvResourceMapBuilder
Return the RDF model as a ResourceMap.
getMon() - Method in class org.dataone.service.types.v1.Schedule
Get the 'mon' attribute value.
getMonitorInfo(int) - Method in class org.dataone.service.types.v1.MonitorList
Get 'monitorInfo' element item by position.
getMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
Get the list of 'monitorInfo' element items.
getMultipartFiles() - Method in class org.dataone.mimemultipart.MultipartRequest
Return the multipart files as Map of field name to MultipartFile instance.
getMultipartParameters() - Method in class org.dataone.mimemultipart.MultipartRequest
Return the multipart parameters as Map of field name to form field String value.
getMultipartRestClient() - Method in class org.dataone.client.auth.AuthTokenSession
 
getMultipartRestClient() - Method in class org.dataone.client.auth.X509Session
 
getMultipartRestClient() - Static method in class org.dataone.client.v1.itk.D1Client
 
getMultipartRestClient() - Static method in class org.dataone.client.v2.itk.D1Client
 
getMultivalued() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'multivalued' element value.
getName() - Method in class org.dataone.client.types.InputStreamDataSource
get the name of the data source.
getName() - Method in class org.dataone.service.types.v1.Node
Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1.Service
Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'name' element value.
getName() - Method in class org.dataone.service.types.v2.MediaType
Get the 'name' attribute value.
getName() - Method in class org.dataone.service.types.v2.MediaTypeProperty
Get the 'name' attribute value.
getNode(NodeReference) - Method in class org.dataone.client.NodeLocator
Return a Node associated with the nodeReference parameter, or throw a ClientSideException
getNode(String) - Method in class org.dataone.client.NodeLocator
Return a node associated with the baseUrl parameter, or throw a ClientSideException
getNode(int) - Method in class org.dataone.service.types.v1.NodeList
Get 'node' element item by position.
getNode(int) - Method in class org.dataone.service.types.v2.NodeList
Get 'node' element item by position.
getNodeBaseServiceUrl() - Method in interface org.dataone.client.D1Node
Get the base service URL for the associated Member or Coordinating Node.
getNodeBaseServiceUrl() - Method in class org.dataone.client.rest.MultipartD1Node
Retrieve the service URL for this node.
getNodeBaseServiceUrl() - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getNodeBaseServiceUrl() - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getNodeBaseServiceUrl() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getNodeBaseServiceUrl() - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getNodeCapabilities(NodeReference) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getNodeCapabilities(NodeReference) - Method in interface org.dataone.service.cn.v2.CNRegister
 
getNodeId() - Method in interface org.dataone.client.D1Node
Get the NodeId associated with the D1Node
getNodeId() - Method in class org.dataone.client.rest.MultipartD1Node
 
getNodeId() - Method in exception org.dataone.service.exceptions.BaseException
Get the node Id string
getNodeIdentifier() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the 'nodeIdentifier' element value.
getNodeIdentifier() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'nodeIdentifier' element value.
getNodeList() - Method in class org.dataone.service.types.v1.NodeList
Get the list of 'node' element items.
getNodeList() - Method in class org.dataone.service.types.v2.NodeList
Get the list of 'node' element items.
getNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.Node
Get the 'nodeReplicationPolicy' element value.
getNodeType() - Method in interface org.dataone.client.D1Node
Get the NodeType associated with the D1Node
getNodeType() - Method in class org.dataone.client.rest.MultipartD1Node
 
getNumberReplicas() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the 'numberReplicas' attribute value.
getObjectFormat(int) - Method in class org.dataone.service.types.v1.ObjectFormatList
Get 'objectFormat' element item by position.
getObjectFormat(int) - Method in class org.dataone.service.types.v2.ObjectFormatList
Get 'objectFormat' element item by position.
getObjectFormatFile() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
Convenience method to retrieve the default format list as a stream
getObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
Get the list of 'objectFormat' element items.
getObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList
Get the list of 'objectFormat' element items.
getObjectFormatMap() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
 
getObjectFormatMap() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
Return the hash containing the formatId and format mapping
getObjectInfo(int) - Method in class org.dataone.service.types.v1.ObjectList
Get 'objectInfo' element item by position.
getObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
Get the list of 'objectInfo' element items.
getObjectLocation(int) - Method in class org.dataone.service.types.v1.ObjectLocationList
Get 'objectLocation' element item by position.
getObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
Get the list of 'objectLocation' element items.
getObsoletedBy() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'obsoletedBy' element value.
getObsoletes() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'obsoletes' element value.
getOption(int) - Method in class org.dataone.service.types.v2.OptionList
Get 'option' element item by position.
getOptionList() - Method in class org.dataone.service.types.v2.OptionList
Get the list of 'option' element items.
getOREModel() - Method in class org.dataone.ore.ResourceMapFactory
this method optimizes retrieving and caching the ORE model, used for reasoning model
getOriginalVersion() - Method in class org.dataone.client.types.ObsoletesChain
 
getOriginMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'originMemberNode' element value.
getOutputStream() - Method in class org.dataone.client.types.InputStreamDataSource
get an output stream for this data source.
getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in interface org.dataone.service.mn.v2.MNPackage
 
getPackageId() - Method in class org.dataone.client.v1.itk.DataPackage
 
getPackageId() - Method in class org.dataone.client.v2.itk.DataPackage
 
getParameter(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getParameterMap() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getParameterNames() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getParameterValues(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getPart(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getParts() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getPathInfo() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getPathTranslated() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getPendingMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getPendingMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getPendingMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getPendingMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
getPermission(int) - Method in class org.dataone.service.types.v1.AccessRule
Get 'permission' element item by position.
getPermissionList() - Method in class org.dataone.service.types.v1.AccessRule
Get the list of 'permission' element items.
getPermissionMap(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
 
getPerson(int) - Method in class org.dataone.service.types.v1.SubjectInfo
Get 'person' element item by position.
getPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
Get the list of 'person' element items.
getPid() - Method in exception org.dataone.service.exceptions.BaseException
Deprecated.
As of release 2.4, replaced by BaseException.getIdentifier()
getPing() - Method in class org.dataone.service.types.v1.Node
Get the 'ping' element value.
getPreference() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the 'preference' element value.
getPreferredMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get 'preferredMemberNode' element item by position.
getPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the list of 'preferredMemberNode' element items.
getPrivateKey() - Method in class org.dataone.client.auth.X509Session
 
getProperty(int) - Method in class org.dataone.service.types.v2.MediaType
Get 'property' element item by position.
getProperty(int) - Method in class org.dataone.service.types.v2.Node
Get 'property' element item by position.
getPropertyList() - Method in class org.dataone.service.types.v2.MediaType
Get the list of 'property' element items.
getPropertyList() - Method in class org.dataone.service.types.v2.Node
Get the list of 'property' element items.
getProtocol() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getPublishDate(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
 
getQueryEngine(int) - Method in class org.dataone.service.types.v1_1.QueryEngineList
Get 'queryEngine' element item by position.
getQueryEngineDescription(Session, String) - Method in class org.dataone.client.rest.MultipartD1Node
 
getQueryEngineDescription(String) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getQueryEngineDescription(String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getQueryEngineDescription(String) - Method in interface org.dataone.service.cn.v1.CNRead
 
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.cn.v2.CNRead
 
getQueryEngineDescription(String) - Method in interface org.dataone.service.mn.v1.MNQuery
 
getQueryEngineDescription(Session, String) - Method in interface org.dataone.service.mn.v2.MNQuery
 
getQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
Get the list of 'queryEngine' element items.
getQueryEngineVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the 'queryEngineVersion' element value.
getQueryField(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get 'queryField' element item by position.
getQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the list of 'queryField' element items.
getQuerySchemaVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the 'querySchemaVersion' element value.
getQueryString() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getReader() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRealPath(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRemoteAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRemoteHost() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRemotePort() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRemoteUser() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getReplica(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getReplica(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getReplica(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
getReplica(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
getReplica(int) - Method in class org.dataone.service.types.v1.SystemMetadata
Get 'replica' element item by position.
getReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the list of 'replica' element items.
getReplicaMemberNode() - Method in class org.dataone.service.types.v1.Replica
Get the 'replicaMemberNode' element value.
getReplicationAllowed() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the 'replicationAllowed' attribute value.
getReplicationPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'replicationPolicy' element value.
getReplicationStatus() - Method in class org.dataone.service.types.v1.Replica
Get the 'replicationStatus' element value.
getReplicaVerified() - Method in class org.dataone.service.types.v1.Replica
Get the 'replicaVerified' element value.
getRequestDispatcher(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRequestedSessionId() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRequestURI() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getRequestURL() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getResetConfiguration() - Static method in class org.dataone.configuration.Settings
 
getResource() - Method in class org.dataone.service.util.D1Url
 
getResourceMap() - Method in class org.dataone.client.v1.itk.DataPackage
Return the internally stored resource map
getResourceMap() - Method in class org.dataone.client.v2.itk.DataPackage
Return the internally stored resource map
getRestClient(Session) - Method in class org.dataone.client.rest.MultipartD1Node
API methods should use this method to get the MultipartRestClient to be used for the call.
getRestriction(int) - Method in class org.dataone.service.types.v1.Service
Get 'restriction' element item by position.
getRestrictionList() - Method in class org.dataone.service.types.v1.Service
Get the list of 'restriction' element items.
getRightsHolder(int) - Method in class org.dataone.service.types.v1.Group
Get 'rightsHolder' element item by position.
getRightsHolder() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'rightsHolder' element value.
getRightsHolderList() - Method in class org.dataone.service.types.v1.Group
Get the list of 'rightsHolder' element items.
getSchedule() - Method in class org.dataone.service.types.v1.Synchronization
Get the 'schedule' element value.
getScheme() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getSec() - Method in class org.dataone.service.types.v1.Schedule
Get the 'sec' attribute value.
getSerialVersion() - Method in class org.dataone.service.types.v1.DescribeResponse
get the SerialVersion of the object SystemMetadata
getSerialVersion() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'serialVersion' element value.
getSeriesId() - Method in class org.dataone.service.types.v2.SystemMetadata
Get the 'seriesId' element value.
getServerName() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getServerPort() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getService(int) - Method in class org.dataone.service.types.v1.Services
Get 'service' element item by position.
getServiceList() - Method in class org.dataone.service.types.v1.Services
Get the list of 'service' element items.
getServices() - Method in class org.dataone.service.types.v1.Node
Get the 'services' element value.
getServletContext() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getServletPath() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getSession(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager
extracts the principal from the certificate passed in with the request and creates the dataone Session object.
getSession() - Method in class org.dataone.client.rest.HttpMultipartRestClient
 
getSession() - Method in interface org.dataone.client.rest.MultipartRestClient
 
getSession(boolean) - Method in class org.dataone.mimemultipart.MultipartRequest
 
getSession() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getSize() - Method in class org.dataone.service.types.v1.ObjectInfo
Get the 'size' element value.
getSize() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'size' element value.
getSpaceAllocated() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the 'spaceAllocated' element value.
getSSLConnectionSocketFactory(String) - Method in class org.dataone.client.auth.CertificateManager
For use by clients making requests via SSL connection.
getSSLConnectionSocketFactory(X509Session) - Method in class org.dataone.client.auth.CertificateManager
 
getSSLSocketFactory(String) - Method in class org.dataone.client.auth.CertificateManager
For use by clients making requests via SSL connection.
getSSLSocketFactory(X509Session) - Method in class org.dataone.client.auth.CertificateManager
 
getStart() - Method in class org.dataone.service.types.v1.Slice
Get the 'start' attribute value.
getStartingPoint() - Method in class org.dataone.client.types.ObsoletesChain
 
getState() - Method in class org.dataone.service.types.v1.Node
Get the 'state' attribute value.
getSubject(int) - Method in class org.dataone.service.types.v1.AccessRule
Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Group
Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.Node
Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v1.Person
Get the 'subject' element value.
getSubject() - Method in class org.dataone.service.types.v1.Session
Get the 'subject' element value.
getSubject(int) - Method in class org.dataone.service.types.v1.SubjectList
Get 'subject' element item by position.
getSubject() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'subject' element value.
getSubjectDN(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager
Returns the RFC2253 string representation for the certificate's subject This is the standard format used in DataONE.
getSubjectInfo(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager
Retrieve the SubjectInfo contained in the given certificate
getSubjectInfo(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getSubjectInfo(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getSubjectInfo(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
getSubjectInfo(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
getSubjectInfo() - Method in class org.dataone.service.types.v1.Session
Get the 'subjectInfo' element value.
getSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.Node
Get the list of 'subject' element items.
getSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
Get the list of 'subject' element items.
getSubmitter() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the 'submitter' element value.
getSuccess() - Method in class org.dataone.service.types.v1.Ping
Get the 'success' attribute value.
getSynchronization() - Method in class org.dataone.service.types.v1.Node
Get the 'synchronization' element value.
getSystemMetadata(Session, Identifier, boolean) - Method in class org.dataone.client.v1.impl.MultipartCNode
Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getSystemMetadata(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
getSystemMetadata(Session, Identifier, boolean) - Method in class org.dataone.client.v1.impl.MultipartMNode
Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getSystemMetadata(Identifier) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
getSystemMetadata() - Method in class org.dataone.client.v1.itk.D1Object
 
getSystemMetadata() - Method in class org.dataone.client.v1.itk.DataPackage
Get the SystemMetadata object associated with the data package.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartD1Node
Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
Get the system metadata from a resource with the specified guid, potentially using the local system metadata cache if specified to do so.
getSystemMetadata() - Method in class org.dataone.client.v2.itk.D1Object
 
getSystemMetadata() - Method in class org.dataone.client.v2.itk.DataPackage
Get the SystemMetadata object associated with the data package.
getSystemMetadata(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
 
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
 
getSystemMetadata(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
getTotal() - Method in class org.dataone.service.types.v1.Slice
Get the 'total' attribute value.
getTraceDetail(String) - Method in exception org.dataone.service.exceptions.BaseException
Get the value of one of the trace detail parametersm retrieved by its key value.
getTraceKeySet() - Method in exception org.dataone.service.exceptions.BaseException
Return a Set representation of all of the keys for the trace values in this exception.
getType() - Method in class org.dataone.service.types.v1.Node
Get the 'type' attribute value.
getType() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'type' element value.
getType() - Method in class org.dataone.service.types.v2.Property
Get the 'type' attribute value.
getUncharacterizedMembers() - Method in class org.dataone.client.v1.itk.DataPackage
Returns a list of package members that are not in the relationship map (implying that these are not true members, as they will not be included in the serialized ResourceMap).
getUncharacterizedMembers() - Method in class org.dataone.client.v2.itk.DataPackage
Returns a list of package members that are not in the relationship map (implying that these are not true members, as they will not be included in the serialized ResourceMap).
getUnresolvableMembers() - Method in class org.dataone.client.v1.itk.DataPackage
Returns the Identifiers in the relationship map that cannot be found in the object map or resolved by the CN.
getUnresolvableMembers() - Method in class org.dataone.client.v2.itk.DataPackage
Returns the Identifiers in the relationship map that cannot be found in the object map or resolved by the CN.
getUrl() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the 'url' element value.
getUrl() - Method in class org.dataone.service.util.D1Url
 
getUserAgent() - Method in class org.dataone.service.types.v1.LogEntry
Get the 'userAgent' element value.
getUserAgent() - Method in class org.dataone.service.types.v2.LogEntry
Get the 'userAgent' element value.
getUserPrincipal() - Method in class org.dataone.mimemultipart.MultipartRequest
 
getValue() - Method in class org.dataone.service.types.v1.Checksum
Get the extension value.
getValue() - Method in class org.dataone.service.types.v1.Identifier
Get the 'Identifier' complexType value.
getValue() - Method in class org.dataone.service.types.v1.NodeReference
Get the 'NodeReference' complexType value.
getValue() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
Get the 'ObjectFormatIdentifier' simpleType value.
getValue() - Method in class org.dataone.service.types.v1.Subject
Get the 'Subject' complexType value.
getValue() - Method in class org.dataone.service.types.v2.MediaTypeProperty
Get the extension value.
getValue() - Method in class org.dataone.service.types.v2.Property
Get the extension value.
getVerified() - Method in class org.dataone.service.types.v1.Person
Get the 'verified' element value.
getVersion(int) - Method in class org.dataone.service.types.v1.ObjectLocation
Get 'version' element item by position.
getVersion() - Method in class org.dataone.service.types.v1.Service
Get the 'version' attribute value.
getVersionAsOf(Date) - Method in class org.dataone.client.types.ObsoletesChain
 
getVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the list of 'version' element items.
getWday() - Method in class org.dataone.service.types.v1.Schedule
Get the 'wday' attribute value.
getYear() - Method in class org.dataone.service.types.v1.Schedule
Get the 'year' attribute value.
givenName - Variable in class org.dataone.service.types.v1.Person
 
givesBackgroundTo - Static variable in class org.dataone.vocabulary.CITO_263
 
givesSupportTo - Static variable in class org.dataone.vocabulary.CITO_263
 
grabAccessPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
 
grabAllowListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessPolicy
 
grabPermissionListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
 
grabReplicaListNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
 
grabReplicationPolicyNullIfEmpty() - Method in class org.dataone.service.types.v1.SystemMetadata
 
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.AccessRule
 
grabSubjectListNullIfEmpty() - Method in class org.dataone.service.types.v1.Node
 
Group - Class in org.dataone.service.types.v1
Group represents metadata about a :term:`Subject` that represents a collection of other Subjects.
Group() - Constructor for class org.dataone.service.types.v1.Group
 
group - Variable in class org.dataone.service.types.v1.SubjectInfo
 
groupName - Variable in class org.dataone.service.types.v1.Group
 
GroupNameComparator - Class in org.dataone.service.types.v1.comparators
A comparator for comparing the Group objects base on the GroupName property (String) Note: this comparator imposes orderings that are inconsistent with equals.
GroupNameComparator() - Constructor for class org.dataone.service.types.v1.comparators.GroupNameComparator
 

H

hadEntity - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hadInPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hadMember - Static variable in class org.dataone.vocabulary.PROV
 
hadOutPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hadPlan - Static variable in class org.dataone.vocabulary.PROV
 
hasAccess(Subject, Permission) - Method in class org.dataone.client.types.AccessPolicyEditor
 
hasCitationCharacterization - Static variable in class org.dataone.vocabulary.CITO_263
 
hasCitedEntity - Static variable in class org.dataone.vocabulary.CITO_263
 
hasCitingEntity - Static variable in class org.dataone.vocabulary.CITO_263
 
hasDefaultParam - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hasFormat - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
hashCode() - Method in class org.dataone.service.types.v1.Identifier
return the hashcode of Identifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.NodeReference
return the hashcode of NodeReference's string value.
hashCode() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
return the hashcode of ObjectFormatIdentifier's string value.
hashCode() - Method in class org.dataone.service.types.v1.Subject
return the hashcode of Subject's string value.
hasInPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hasMember - Variable in class org.dataone.service.types.v1.Group
 
hasOutPort - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
hasPart - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
hasReplyFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
hasReservation(Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
hasReservation(Session, Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
hasReservation(Session, Subject, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
hasReservation(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
 
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
hasReservation(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
 
hasSubProgram - Static variable in class org.dataone.vocabulary.ProvONE_V1
Object properties defined in the ProvONE model
hasVersion - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
HEAD - Static variable in class org.dataone.service.util.Constants
HTTP Verb HEAD
headers - Variable in class org.dataone.client.rest.RestClient
 
hour - Variable in class org.dataone.service.types.v1.Schedule
 
httpClient - Variable in class org.dataone.client.rest.RestClient
 
HttpConnectionMonitorService - Class in org.dataone.client.utils
A Service class that monitors HttpClient ConnectionManagers for stale (idle and expired) connections and removes them to free up system resources (sockets).
HttpMultipartRestClient - Class in org.dataone.client.rest
This class wraps the RestClient, adding uniform exception deserialization and the setup of SSL for standard DataONE communications.
HttpMultipartRestClient(HttpClient, X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
The basic constructor to implement the MultipartRestClient interface using apache HttpClient and X509Certificate.
HttpMultipartRestClient(HttpClientBuilder, X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
This constructor is used to give users flexibility in creating the HttpClient, but takes care of configuring the ConnectionManager with the X509Session parameter.
HttpMultipartRestClient() - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
creates an HttpMultipartRestClient configured with the certificate in the default or set location in the CertificateManager.
HttpMultipartRestClient(String) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
creates an HttpMultipartRestClient configured with the certificate registered to the CertificateManager.
HttpMultipartRestClient(X509Session) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
creates an HttpMultipartRestClient configured with the certificate contained in the X509Session.
HttpMultipartRestClient(AuthTokenSession) - Constructor for class org.dataone.client.rest.HttpMultipartRestClient
 
HttpUtils - Class in org.dataone.client.utils
A utility class to simplify creation and configuration of HttpClients.
HttpUtils() - Constructor for class org.dataone.client.utils.HttpUtils
 

I

Identifier - Class in org.dataone.service.types.v1
An :term:`identifier` (:term:`PID`) in the DataONE system that is used to uniquely and globally identify an object.
Identifier() - Constructor for class org.dataone.service.types.v1.Identifier
 
identifier - Variable in class org.dataone.service.types.v1.LogEntry
 
identifier - Variable in class org.dataone.service.types.v1.Node
 
identifier - Variable in class org.dataone.service.types.v1.ObjectInfo
 
identifier - Variable in class org.dataone.service.types.v1.ObjectLocationList
 
identifier - Variable in class org.dataone.service.types.v1.SystemMetadata
 
identifier - Variable in class org.dataone.service.types.v2.LogEntry
 
identifier - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
IdentifierNotUnique - Exception in org.dataone.service.exceptions
The DataONE IdentifierNotUnique exception, raised when a requested identifier has already been used or reserved.
IdentifierNotUnique(String, String) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
 
IdentifierNotUnique(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
 
IdentifierNotUnique(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
 
IdentifierNotUnique(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.IdentifierNotUnique
 
identifiers() - Method in class org.dataone.client.v1.itk.DataPackage
Return the set of Identifiers that are part of this package.
identifiers() - Method in class org.dataone.client.v2.itk.DataPackage
Return the set of Identifiers that are part of this package.
includesExcerptFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
includesQuotationFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
initCnList() - Method in class org.dataone.client.v1.impl.NodeListNodeLocator
Determines which CNodes will be part of the cnList.
initCnList() - Method in class org.dataone.client.v2.impl.NodeListNodeLocator
Determines which CNodes will be part of the cnList.
InputStreamDataSource - Class in org.dataone.client.types
Encapsulate an InputStream within a DataSource interface so that it is accessible to MIME processors.
InputStreamDataSource(String, InputStream) - Constructor for class org.dataone.client.types.InputStreamDataSource
construct an InputStreamDataSource object
insertRelationship(Identifier, List<Identifier>) - Method in class org.dataone.client.v1.itk.DataPackage
Declare which data objects are documented by a metadata object, using their identifiers.
insertRelationship(URI, Predicate, URI) - Method in class org.dataone.client.v1.itk.DataPackage
Relate a given subject URI to an object URI using the given predicate.
insertRelationship(String, Predicate, URI) - Method in class org.dataone.client.v1.itk.DataPackage
Relate a given subject blank node to an object URI using the given predicate.
insertRelationship(URI, Predicate, List<URI>) - Method in class org.dataone.client.v1.itk.DataPackage
Relate a given subject URI to a list of object URIs using the given predicate.
insertRelationship(URI, Predicate, Object) - Method in class org.dataone.client.v1.itk.DataPackage
Relate a given subject URI to a literal using the given predicate.
insertRelationship(Identifier, List<Identifier>) - Method in class org.dataone.client.v2.itk.DataPackage
Declare which data objects are documented by a metadata object, using their identifiers.
insertRelationship(URI, Predicate, URI) - Method in class org.dataone.client.v2.itk.DataPackage
Relate a given subject URI to an object URI using the given predicate.
insertRelationship(String, Predicate, URI) - Method in class org.dataone.client.v2.itk.DataPackage
Relate a given subject blank node to an object URI using the given predicate.
insertRelationship(URI, Predicate, List<URI>) - Method in class org.dataone.client.v2.itk.DataPackage
Relate a given subject URI to a list of object URIs using the given predicate.
insertRelationship(URI, Predicate, Object) - Method in class org.dataone.client.v2.itk.DataPackage
Relate a given subject URI to a literal using the given predicate.
insertRelationship(ResourceMap, Resource, Property, List<RDFNode>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Insert statements into the resource map graph using the given subject, predicate, and list of object URIs.
insertRelationship(ResourceMap, String, Property, List<RDFNode>) - Method in class org.dataone.ore.ProvResourceMapBuilder
Insert statements into the resource map graph using a blank (anonymous) node ID as the subject, a predicate, and a list of objects.
instance() - Static method in class org.dataone.client.v2.formats.ObjectFormatInfo
Get the single instance of this class, creating it when needed on first invocation.
instructionalMethod - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
InsufficientResources - Exception in org.dataone.service.exceptions
The DataONE InsufficientResources exception, raised when insufficient space, bandwidth, or other resources are available to complete a request.
InsufficientResources(String, String) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
 
InsufficientResources(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
 
InsufficientResources(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
 
InsufficientResources(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InsufficientResources
 
InvalidCredentials - Exception in org.dataone.service.exceptions
The DataONE InvalidCredentials exception, raised when a request is issued for which the credentials were not validated.
InvalidCredentials(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
 
InvalidCredentials(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
 
InvalidCredentials(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
 
InvalidCredentials(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidCredentials
 
InvalidRequest - Exception in org.dataone.service.exceptions
The DataONE InvalidRequest exception, raised when a request is issued for which one or more parameters provided in the call were invalid.
InvalidRequest(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
 
InvalidRequest(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
 
InvalidRequest(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
 
InvalidRequest(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidRequest
 
InvalidSystemMetadata - Exception in org.dataone.service.exceptions
The DataONE InvalidSystemMetadata exception, raised when a request is issued and the supplied system metadata is invalid.
InvalidSystemMetadata(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
 
InvalidSystemMetadata(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
 
InvalidSystemMetadata(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
 
InvalidSystemMetadata(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidSystemMetadata
 
InvalidToken - Exception in org.dataone.service.exceptions
The DataONE InvalidToken exception, raised when supplied authentication token could not be verified as being valid.
InvalidToken(String, String) - Constructor for exception org.dataone.service.exceptions.InvalidToken
 
InvalidToken(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
 
InvalidToken(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
 
InvalidToken(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.InvalidToken
 
ipAddress - Variable in class org.dataone.service.types.v1.LogEntry
 
ipAddress - Variable in class org.dataone.service.types.v2.LogEntry
 
isAgreedWithBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isArchived(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
 
isAsyncStarted() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isAsyncSupported() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.rest.MultipartD1Node
 
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.rest.MultipartD1Node
 
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
isAuthorized(Identifier, Permission) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
isAuthorized(Session, Identifier, Permission) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization
 
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v1.CNAuthorization
Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.cn.v2.CNAuthorization
 
isAuthorized(Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
 
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
Deprecated.
isAuthorized(Session, Identifier, Permission) - Method in interface org.dataone.service.mn.tier2.v2.MNAuthorization
 
isAuthorized(Collection<Subject>, Permission, SystemMetadata) - Static method in class org.dataone.service.types.v1.util.AuthUtils
Queries the systemMetadata to see if one of the given subjects is allowed the specified permission against the given systemMetadata
isCitedAsAuthorityBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsDataSourceBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsEvidenceBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsMetadataDocumentBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsPontentialSolutionBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsRecommendedReading - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsRelatedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedAsSourceDocumentBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCitedForInformationBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCNAuthorityForSystemMetadataUpdate(NodeList, SystemMetadata) - Static method in class org.dataone.service.types.v2.util.AuthUtils
the CN is the authority for systemMetadata updates only for v1 MNs that implement MNStorage services.
isCompiledBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isComplete() - Method in class org.dataone.client.types.ObsoletesChain
An ObsoletesChain is complete when the earliest and latest links have no obsoletedBy and obsoletes, respectively.
isConfirmedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCorrectedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCreditedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isCritiquedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDeridedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDescribedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDisagreedWithBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDiscussedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDisputedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isDocumentedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isException() - Method in class org.dataone.service.util.ExceptionalInputStream
 
isExtendedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isFormatOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isLatestVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
 
isMemberOf - Variable in class org.dataone.service.types.v1.Person
 
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMethodAllowed(Subject, List<Node>, String, String) - Static method in class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil
Interprets the CN's ServiceMethodRestriction for a given Subject+serviceName+methodName
isMultipartContent(HttpServletRequest) - Static method in class org.dataone.mimemultipart.MultipartRequestResolver
 
isNodeAuthorized(Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
isNodeAuthorized(Session, Subject, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
isNodeAuthorized(Session, Subject, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
isNodeAuthorized(Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication
 
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v1.CNReplication
Deprecated.
isNodeAuthorized(Session, Subject, Identifier) - Method in interface org.dataone.service.cn.v2.CNReplication
 
isParodiedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isPartOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isPlagiarizedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isQualifiedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isReferencedBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isRefutedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isReplacedBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isReplicate() - Method in class org.dataone.service.types.v1.Node
Get the 'replicate' attribute value.
isRequestedSessionIdFromCookie() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isRequestedSessionIdFromURL() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isRequestedSessionIdFromUrl() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isRequestedSessionIdValid() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isRequiredBy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isRetractedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isReturnable() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'returnable' element value.
isReviewedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isRidiculedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isSearchable() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'searchable' element value.
isSecure() - Method in class org.dataone.mimemultipart.MultipartRequest
 
isSortable() - Method in class org.dataone.service.types.v1_1.QueryField
Get the 'sortable' element value.
isSpeculatedOnBy - Static variable in class org.dataone.vocabulary.CITO_263
 
issued - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
isSupportedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isSynchronize() - Method in class org.dataone.service.types.v1.Node
Get the 'synchronize' attribute value.
isUpdatedBy - Static variable in class org.dataone.vocabulary.CITO_263
 
isUserInRole(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
isUsingFallbackFormatList() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
Returns true if the cache has not been able to successfully refresh from the CN
isVersionOf - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 

J

jaxbContextMap - Static variable in class org.dataone.service.util.TypeMarshaller
 
joinToUrlWith(String, String) - Method in class org.dataone.service.util.D1Url
use this method to avoid inadvertent duplication of the joining character The most common case is when a baseUrl contains a trailing slash and you want to append another path elements.
Jurisdiction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 

K

key - Variable in class org.dataone.service.types.v2.OptionList
 
key - Variable in class org.dataone.service.types.v2.Property
 

L

language - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
lastCompleteHarvest - Variable in class org.dataone.service.types.v1.Synchronization
 
lastHarvested - Variable in class org.dataone.service.types.v1.Synchronization
 
lastRefreshDate - Variable in class org.dataone.client.v2.formats.ObjectFormatCache
 
lastSuccess - Variable in class org.dataone.service.types.v1.Ping
 
latestIsArchived() - Method in class org.dataone.client.types.ObsoletesChain
 
latestRestClient - Variable in class org.dataone.client.rest.MultipartD1Node
the latest MRC used to make an API call
latestSession - Variable in class org.dataone.client.rest.MultipartD1Node
 
license - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
LicenseDocument - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
likes - Static variable in class org.dataone.vocabulary.CITO_263
 
LinguisticSystem - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
listChecksumAlgorithms() - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listChecksumAlgorithms() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v1.CNCore
 
listChecksumAlgorithms() - Method in interface org.dataone.service.cn.v2.CNCore
 
listD1Nodes() - Method in class org.dataone.client.NodeLocator
Returns the set of NodeReferences in the NodeLocator
listD1Nodes(NodeType) - Method in class org.dataone.client.NodeLocator
Returns the set of NodeReferences of D1Nodes matching the nodeType parameter
listFormats() - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listFormats() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
List the object formats registered with the object format service.
listFormats() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listFormats() - Method in interface org.dataone.service.cn.v1.CNCore
 
listFormats() - Method in interface org.dataone.service.cn.v2.CNCore
 
listFormats() - Method in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
List the object formats registered with the object format service.
listNodeIds() - Method in class org.dataone.client.v1.impl.MultipartCNode
Return the set of Node IDs for all of the nodes registered to the CN
listNodes() - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listNodes() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listNodes() - Method in interface org.dataone.service.cn.v1.CNCore
 
listNodes() - Method in interface org.dataone.service.cn.v2.CNCore
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, NodeReference, Identifier, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, Identifier, Boolean, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, NodeReference, Identifier, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNRead
 
listObjects(Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
listObjects(Session, Date, Date, ObjectFormatIdentifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
listObjects(Session, Date, Date, ObjectFormatIdentifier, Identifier, Boolean, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
listQueryEngines(Session) - Method in class org.dataone.client.rest.MultipartD1Node
 
listQueryEngines() - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listQueryEngines() - Method in class org.dataone.client.v1.impl.MultipartMNode
 
listQueryEngines() - Method in interface org.dataone.service.cn.v1.CNRead
 
listQueryEngines(Session) - Method in interface org.dataone.service.cn.v2.CNRead
 
listQueryEngines() - Method in interface org.dataone.service.mn.v1.MNQuery
 
listQueryEngines(Session) - Method in interface org.dataone.service.mn.v2.MNQuery
 
listSubjects(String, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listSubjects(Session, String, String, Integer, Integer) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
listSubjects(Session, String, String, Integer, Integer) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listSubjects(String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
listSubjects(Session, String, String, Integer, Integer) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
listUpdateHistory(Identifier) - Static method in class org.dataone.client.v1.itk.D1Client
Return the full ObsoletesChain for the given Identifier.
listViews(Session) - Method in class org.dataone.client.rest.MultipartD1Node
 
listViews() - Method in class org.dataone.client.v2.impl.MultipartCNode
 
listViews(Session) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
listViews() - Method in interface org.dataone.service.cn.v2.CNView
 
listViews(Session) - Method in interface org.dataone.service.mn.v2.MNView
 
loadCertificate() - Method in class org.dataone.client.auth.CertificateManager
Load the configured certificate into the keystore singleton Follows the logic of first searching the certificate at the setCertificateLocation() location, then using the default location.
loadCertificateFromFile(String) - Method in class org.dataone.client.auth.CertificateManager
Load X509Certificate object from given file
loadKey() - Method in class org.dataone.client.auth.CertificateManager
Load configured private key from the keystore
loadPrivateKeyFromFile(String, String) - Method in class org.dataone.client.auth.CertificateManager
Load PrivateKey object from given file
locateDefaultCertificate() - Method in class org.dataone.client.auth.CertificateManager
Locate the default certificate.
Location - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
LocationPeriodOrJurisdiction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
log - Static variable in class org.dataone.client.auth.ClientIdentityManager
 
log - Static variable in class org.dataone.client.rest.HttpMultipartRestClient
 
log - Static variable in class org.dataone.client.rest.MultipartD1Node
 
log - Static variable in class org.dataone.client.rest.RestClient
 
log - Static variable in class org.dataone.client.v1.impl.MultipartCNode
 
log - Static variable in class org.dataone.client.v1.impl.MultipartMNode
 
log - Static variable in class org.dataone.client.v2.impl.MultipartCNode
 
log - Static variable in class org.dataone.client.v2.impl.MultipartMNode
 
log - Static variable in class org.dataone.eml.DataoneEMLParser
 
Log - Class in org.dataone.service.types.v1
Represents a collection of :class:`Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v1.Log
 
Log - Class in org.dataone.service.types.v2
Extends :class:`Types.Log` to represent a collection of :class:`v2_0.Types.LogEntry` elements, used to transfer log information between DataONE components.
Log() - Constructor for class org.dataone.service.types.v2.Log
 
log - Static variable in class org.dataone.service.util.ExceptionHandler
 
logEntry - Variable in class org.dataone.service.types.v1.Log
 
LogEntry - Class in org.dataone.service.types.v1
A single log entry as reported by a Member Node or Coordinating Node through the :func:`MNCore.getLogRecords` or :func:`CNCore.getLogRecords` methods.
LogEntry() - Constructor for class org.dataone.service.types.v1.LogEntry
 
logEntry - Variable in class org.dataone.service.types.v2.Log
 
LogEntry - Class in org.dataone.service.types.v2
Extends :class:`Types.LogEntry` by relaxing the value space for the *event* element.
LogEntry() - Constructor for class org.dataone.service.types.v2.LogEntry
 
logger - Static variable in class org.dataone.service.types.v1.TypeFactory
 
login(String, String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
logout() - Method in class org.dataone.mimemultipart.MultipartRequest
 
lookupNodeBaseUrl(String) - Method in class org.dataone.client.v1.impl.MultipartCNode
Find the base URL for a Node based on the Node's identifier as it was registered with the Coordinating Node.
lookupNodeBaseUrl(NodeReference) - Method in class org.dataone.client.v1.impl.MultipartCNode
Find the base URL for a Node based on the Node's identifier as it was registered with the Coordinating Node.
lookupNodeId(String) - Method in class org.dataone.client.v1.impl.MultipartCNode
Find the node identifier for a Node based on the base URL that is used to access its services by looking up the registration for the node at the Coordinating Node.

M

main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleClient
Execute the examples.
main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleDataPackageUpload
Demonstrates copying data package from a source CN to a target MN.
main(String[]) - Static method in class org.dataone.client.v1.examples.ExampleObjectDownload
 
main(String[]) - Static method in class org.dataone.client.v1.examples.SimpleHttpGetClient
A simple command line interface that exercises the HttpClient and CertificateManager to make a single HTTP/S GET call.
main(String[]) - Static method in class org.dataone.client.v2.examples.MultipleRead
 
mapIdentity(Subject, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
mapIdentity(Session, Subject, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
mapIdentity(Session, Subject, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
mapIdentity(Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
mapIdentity(Session, Subject, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(InputStream) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Convenience method of transferring nodeId and nodeBaseURL into a Map
mapNodeList(NodeList) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Convenience method of transferring nodeId and nodeBaseURL into a Map
marshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
 
marshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter
a valid accessRule has at least one Permission and at least one Subject
marshal(Date) - Method in class org.dataone.service.util.DateMarshallingAdapter
 
marshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
 
MarshallingException - Exception in org.dataone.exceptions
A class to represent any exception during marshalling or unmarshalling data objects, typically org.dataone.service.types, but not exclusively.
MarshallingException() - Constructor for exception org.dataone.exceptions.MarshallingException
 
MarshallingException(String) - Constructor for exception org.dataone.exceptions.MarshallingException
 
MarshallingException(Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
 
MarshallingException(String, Throwable) - Constructor for exception org.dataone.exceptions.MarshallingException
 
MarshallingException(String, Throwable, boolean, boolean) - Constructor for exception org.dataone.exceptions.MarshallingException
 
marshalTypeToFile(Object, String) - Static method in class org.dataone.service.util.TypeMarshaller
Marshalls the typeObject to the provided file.
marshalTypeToOutputStream(Object, OutputStream) - Static method in class org.dataone.service.util.TypeMarshaller
Marshalls the typeObject to the provided outputStream.
marshalTypeToOutputStream(Object, OutputStream, String) - Static method in class org.dataone.service.util.TypeMarshaller
Marshalls the typeObject to the provided outputStream.
MAX_CONNECTIONS - Static variable in class org.dataone.client.utils.HttpUtils
The maximum number of connections allowed in total by the HttpClient
MAX_CONNECTIONS_PER_ROUTE - Static variable in class org.dataone.client.utils.HttpUtils
The number of parallel connections allowed per route / server Use caution resetting this one: more is not better:
maxObjectSize - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
 
mday - Variable in class org.dataone.service.types.v1.Schedule
 
mediator - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
MediaType - Class in org.dataone.service.types.v2
Value drawn from the value space of IANA Media Types ( http://www.iana.org/assignments/media-types/media-types.xhtml ).
MediaType() - Constructor for class org.dataone.service.types.v2.MediaType
 
mediaType - Variable in class org.dataone.service.types.v2.ObjectFormat
 
mediaType - Variable in class org.dataone.service.types.v2.SystemMetadata
 
MediaType - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
MediaTypeOrExtent - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
MediaTypeProperty - Class in org.dataone.service.types.v2
Additional optional properties for MediaType as described by IANA.
MediaTypeProperty() - Constructor for class org.dataone.service.types.v2.MediaTypeProperty
 
medium - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
methodName - Variable in class org.dataone.service.types.v1.ServiceMethodRestriction
 
MethodOfAccrual - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
MethodOfInstruction - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
mimeType - Variable in class org.dataone.eml.EMLDocument.DistributionMetadata
 
min - Variable in class org.dataone.service.types.v1.Schedule
 
MNAuthorization - Interface in org.dataone.service.mn.tier2.v1
The DataONE Member Node Tier 2 Authorization interface.
MNAuthorization - Interface in org.dataone.service.mn.tier2.v2
The DataONE Member Node Tier 2 Authorization interface.
MNCore - Interface in org.dataone.service.mn.tier1.v1
The DataONE Member Node Tier 1 Core interface.
MNCore - Interface in org.dataone.service.mn.tier1.v2
The DataONE Member Node Tier 1 Core interface.
MNode - Interface in org.dataone.client.v1
An aggregated API that represents all of the possible services reachable at a Member Node, defined in the org.dataone.service.mn package.
MNode - Interface in org.dataone.client.v2
An aggregated API that represents all of the possible services reachable at a Member Node, defined in the org.dataone.service.mn package.
MNPackage - Interface in org.dataone.service.mn.v2
The DataONE Member Node Optional Package interface for providing complete data package contents in a standardized format (targeting BagIt).
MNQuery - Interface in org.dataone.service.mn.v1
The DataONE MemberNode Optional Query interface.
MNQuery - Interface in org.dataone.service.mn.v2
The DataONE MemberNode Optional Query interface.
MNRead - Interface in org.dataone.service.mn.tier1.v1
The DataONE Member Node Tier 1 Read interface.
MNRead - Interface in org.dataone.service.mn.tier1.v2
The DataONE Member Node Tier 1 Read interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v1
The DataONE Member Node Tier 4 Replication interface.
MNReplication - Interface in org.dataone.service.mn.tier4.v2
The DataONE Member Node Tier 4 Replication interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v1
The DataONE Member Node Tier 3 Storage interface.
MNStorage - Interface in org.dataone.service.mn.tier3.v2
The DataONE Member Node Tier 3 Storage interface.
MNView - Interface in org.dataone.service.mn.v2
The DataONE MemberNode Optional View interface for rendering metadata in user-friendly format[s] as described by the listing of available views.
modified - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
mon - Variable in class org.dataone.service.types.v1.Schedule
 
MONITOR_STALE_CONNECTIONS - Static variable in class org.dataone.client.utils.HttpUtils
 
MonitorInfo - Class in org.dataone.service.types.v1
A single log entry as reported by a Member Node or Coordinating Node through the getMonitorInfos methods.
MonitorInfo() - Constructor for class org.dataone.service.types.v1.MonitorInfo
 
MonitorList - Class in org.dataone.service.types.v1
Schema fragment(s) for this class:
MonitorList() - Constructor for class org.dataone.service.types.v1.MonitorList
 
MultipartCNode - Class in org.dataone.client.v1.impl
CNode represents a DataONE Coordinating Node, and allows calling classes to execute CN services.
MultipartCNode(String) - Constructor for class org.dataone.client.v1.impl.MultipartCNode
Deprecated.
MultipartCNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v1.impl.MultipartCNode
Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services.
MultipartCNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v1.impl.MultipartCNode
Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartCNode - Class in org.dataone.client.v2.impl
CNode represents a DataONE Coordinating Node, and allows calling classes to execute CN services.
MultipartCNode(String) - Constructor for class org.dataone.client.v2.impl.MultipartCNode
Deprecated.
MultipartCNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartCNode
Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services.
MultipartCNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartCNode
Construct a new client-side MultipartCNode (Coordinating Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartD1Node - Class in org.dataone.client.rest
An abstract node class that contains base functionality shared between Coordinating Node and Member Node implementations.
MultipartD1Node(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.rest.MultipartD1Node
Users can set either a default RestClient or default Session that will build a RestClient configured appropriately from the information in the Session.
MultipartD1Node(MultipartRestClient, String) - Constructor for class org.dataone.client.rest.MultipartD1Node
Convenience constructor to create a new instance.
MultipartD1Node(Session, String) - Constructor for class org.dataone.client.rest.MultipartD1Node
Convenience constructor to create a new instance.
MultipartD1Node(String) - Constructor for class org.dataone.client.rest.MultipartD1Node
Deprecated.
MultipartD1Node() - Constructor for class org.dataone.client.rest.MultipartD1Node
Deprecated.
MultipartD1Node - Class in org.dataone.client.v2.impl
A v2-specific abstract subclass for new (non-v1) common methods.
MultipartD1Node(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node
 
MultipartD1Node(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node
 
MultipartD1Node(String) - Constructor for class org.dataone.client.v2.impl.MultipartD1Node
Deprecated.
MultipartMNode - Class in org.dataone.client.v1.impl
MultipartMNode represents a MemberNode, and exposes the services associated with a DataONE Member Node, allowing calling clients to call the services associated with the node.
MultipartMNode(String) - Constructor for class org.dataone.client.v1.impl.MultipartMNode
Deprecated.
MultipartMNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v1.impl.MultipartMNode
Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services.
MultipartMNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v1.impl.MultipartMNode
Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartMNode - Class in org.dataone.client.v2.impl
MultipartMNode represents a MemberNode, and exposes the services associated with a DataONE Member Node, allowing calling clients to call the services associated with the node.
MultipartMNode(String) - Constructor for class org.dataone.client.v2.impl.MultipartMNode
Deprecated.
MultipartMNode(MultipartRestClient, String) - Constructor for class org.dataone.client.v2.impl.MultipartMNode
Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services.
MultipartMNode(MultipartRestClient, String, Session) - Constructor for class org.dataone.client.v2.impl.MultipartMNode
Construct a new client-side MultipartMNode (Member Node) object, passing in the base url of the member node for calling its services, and the Session to use for connections to that node.
MultipartRequest - Class in org.dataone.mimemultipart
Wrap a HttpServletRequest and add two Map attributes to save Form Multipart files and Parameters.
MultipartRequest(HttpServletRequest, Map<String, File>, Map<String, List<String>>) - Constructor for class org.dataone.mimemultipart.MultipartRequest
Create a new MultipartParsingResult.
MultipartRequestResolver - Class in org.dataone.mimemultipart
DataOne conversion of HttpServletRequests into a DataONE MultipartRequest via Jakarta Commons FileUpload 1.2 or above.
MultipartRequestResolver() - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
constructor.
MultipartRequestResolver(String) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
 
MultipartRequestResolver(String, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
 
MultipartRequestResolver(String, int, int) - Constructor for class org.dataone.mimemultipart.MultipartRequestResolver
 
MultipartRestClient - Interface in org.dataone.client.rest
The primary interface to use when constructing DataONE API requests.
multipartRestClient - Static variable in class org.dataone.client.v1.itk.D1Client
 
multipartRestClient - Static variable in class org.dataone.client.v2.itk.D1Client
 
MultipleRead - Class in org.dataone.client.v2.examples
 
MultipleRead() - Constructor for class org.dataone.client.v2.examples.MultipleRead
 
multivalued - Variable in class org.dataone.service.types.v1_1.QueryField
 

N

name - Variable in class org.dataone.service.types.v1.Node
 
name - Variable in class org.dataone.service.types.v1.Service
 
name - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
 
name - Variable in class org.dataone.service.types.v1_1.QueryField
 
name - Variable in class org.dataone.service.types.v2.MediaType
 
name - Variable in class org.dataone.service.types.v2.MediaTypeProperty
 
namespace - Static variable in class org.dataone.vocabulary.CITO_263
 
namespace - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
namespace - Static variable in class org.dataone.vocabulary.PROV
 
namespace - Static variable in class org.dataone.vocabulary.ProvONE_V1
the ProvONE namespace URI
nextVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
 
Node - Class in org.dataone.service.types.v1
A set of values that describe a member or coordinating node, its Internet location, and the services it supports.
Node() - Constructor for class org.dataone.service.types.v1.Node
 
node - Variable in class org.dataone.service.types.v1.NodeList
 
Node - Class in org.dataone.service.types.v2
Extends the Version 1.x :class:`Types.Node` by adding an optional unbounded parameter entry providing additional simple metadata relevant to a Node.
Node() - Constructor for class org.dataone.service.types.v2.Node
 
node - Variable in class org.dataone.service.types.v2.NodeList
 
nodeIdentifier - Variable in class org.dataone.service.types.v1.LogEntry
 
nodeIdentifier - Variable in class org.dataone.service.types.v1.ObjectLocation
 
nodeIdentifier - Variable in class org.dataone.service.types.v2.LogEntry
 
nodeList - Variable in class org.dataone.client.v1.impl.NodeListNodeLocator
 
nodeList - Variable in class org.dataone.client.v2.impl.NodeListNodeLocator
 
NodeList - Class in org.dataone.service.types.v1
A list of :class:`Types.Node` entries returned by :func:`CNCore.listNodes()`.NodeList is described in :mod:`NodeList`.
NodeList() - Constructor for class org.dataone.service.types.v1.NodeList
 
NodeList - Class in org.dataone.service.types.v2
A list of :class:`v2_0.Types.Node` entries returned by :func:`CNCore.listNodes()`.
NodeList() - Constructor for class org.dataone.service.types.v2.NodeList
 
NodeListNodeLocator - Class in org.dataone.client.v1.impl
This implementation of NodeLocator uses a NodeList document to populate the internal maps that have all of the registered MNodes and CNodes, instead of relying on the put methods.
NodeListNodeLocator(NodeList, MultipartRestClient) - Constructor for class org.dataone.client.v1.impl.NodeListNodeLocator
The constructor populates the NodeLocator from MN and CN nodes from the give Nodelist, building D1Node implementations using the MultipartRestClient.
NodeListNodeLocator - Class in org.dataone.client.v2.impl
This implementation of NodeLocator uses a NodeList document to populate the internal maps that have all of the registered MNodes and CNodes, instead of relying on the put methods.
NodeListNodeLocator(NodeList, MultipartRestClient) - Constructor for class org.dataone.client.v2.impl.NodeListNodeLocator
The constructor populates the NodeLocator from MN and CN nodes from the give Nodelist, building D1Node implementations using the MultipartRestClient.
NodelistUtil - Class in org.dataone.service.types.v1.util
Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v1.util.NodelistUtil
 
NodelistUtil - Class in org.dataone.service.types.v2.util
Convenience methods for common ways of accessing nodes and node information in the given nodelist.
NodelistUtil() - Constructor for class org.dataone.service.types.v2.util.NodelistUtil
 
NodeLocator - Class in org.dataone.client
An abstract Service Locator class to resolve NodeReferences into MNode or CNode objects.
NodeLocator() - Constructor for class org.dataone.client.NodeLocator
 
nodeMap - Variable in class org.dataone.client.NodeLocator
this property can be re-initialized by concrete subclasses
NodeReference - Class in org.dataone.service.types.v1
A unique identifier for a DataONE Node.
NodeReference() - Constructor for class org.dataone.service.types.v1.NodeReference
 
nodeReplicationPolicy - Variable in class org.dataone.service.types.v1.Node
 
NodeReplicationPolicy - Class in org.dataone.service.types.v1
The overall replication policy for the node that expresses constraints on object size, total objects, source nodes, and object format types.
NodeReplicationPolicy() - Constructor for class org.dataone.service.types.v1.NodeReplicationPolicy
 
NodeState - Enum in org.dataone.service.types.v1
An indicator of the current node accessibility.
nodeType - Variable in class org.dataone.client.rest.MultipartD1Node
 
NodeType - Enum in org.dataone.service.types.v1
The type of this node, which is either *mn* for Member Nodes, or *cn* for Coordinating Nodes.
NotAuthorized - Exception in org.dataone.service.exceptions
The DataONE NotAuthorized exception, raised when the supplied identity information is not authorized for the requested operation.
NotAuthorized(String, String) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
 
NotAuthorized(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
 
NotAuthorized(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
 
NotAuthorized(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotAuthorized
 
NotCached - Exception in org.dataone.client.exception
NotCached is thrown when an object is retrieved from a cache and found to not have been placed in the cache.
NotCached(String) - Constructor for exception org.dataone.client.exception.NotCached
Construct a NotCached exception with the message.
NotFound - Exception in org.dataone.service.exceptions
The DataONE NotFound exception, raised when an object is not present on the node where the exception was raised.
NotFound(String, String) - Constructor for exception org.dataone.service.exceptions.NotFound
 
NotFound(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
 
NotFound(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
 
NotFound(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotFound
 
NotImplemented - Exception in org.dataone.service.exceptions
The DataONE NotImplemented exception, raised when a request is issued for a service that is not implemented by this node.
NotImplemented(String, String) - Constructor for exception org.dataone.service.exceptions.NotImplemented
 
NotImplemented(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
 
NotImplemented(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
 
NotImplemented(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.NotImplemented
 
numberReplicas - Variable in class org.dataone.service.types.v1.ReplicationPolicy
 

O

ObjectFactory - Class in org.dataone.service.types.v1
This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v1_1
This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v1_1 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v1_1.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v1
ObjectFactory - Class in org.dataone.service.types.v2
This object contains factory methods for each Java content interface and Java element interface generated in the org.dataone.ns.service.types.v2 package.
ObjectFactory() - Constructor for class org.dataone.service.types.v2.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.dataone.ns.service.types.v2
ObjectFormat - Class in org.dataone.service.types.v1
One value from the DataONE Object Format Vocabulary which is returned by :func:`CNCore.getFormat()`.An *ObjectFormat* is the structure returned from the :func:`CNCore.getFormat()` method of the CN REST interface.
ObjectFormat() - Constructor for class org.dataone.service.types.v1.ObjectFormat
 
objectFormat - Variable in class org.dataone.service.types.v1.ObjectFormatList
 
ObjectFormat - Class in org.dataone.service.types.v2
Extends Version 1.x :class:`Types.ObjectFormat` by adding :term:`mediaType` and :term:`extension` elements.
ObjectFormat() - Constructor for class org.dataone.service.types.v2.ObjectFormat
 
objectFormat - Variable in class org.dataone.service.types.v2.ObjectFormatList
 
ObjectFormatCache - Class in org.dataone.client.v2.formats
The ObjectFormatCache is a wrapper class for the DataONE ObjectFormatList type.
ObjectFormatIdentifier - Class in org.dataone.service.types.v1
A string used to identify an instance of :class:`Types.ObjectFormat` and MUST be unique within an instance of :class:`Types.ObjectFormatList`.
ObjectFormatIdentifier() - Constructor for class org.dataone.service.types.v1.ObjectFormatIdentifier
 
ObjectFormatInfo - Class in org.dataone.client.v2.formats
A singleton class that provides metadata about object formats, such as the MIME type and file extensions associated with a particular format.
ObjectFormatList - Class in org.dataone.service.types.v1
An ObjectFormatList is the structure returned from the :func:`CNCore.listFormats()` method of the CN REST interface.
ObjectFormatList() - Constructor for class org.dataone.service.types.v1.ObjectFormatList
 
ObjectFormatList - Class in org.dataone.service.types.v2
Extends :class:`Types.ObjectFormatList` to provide a list of :class:`v2_0.Types.ObjectFormat`.
ObjectFormatList() - Constructor for class org.dataone.service.types.v2.ObjectFormatList
 
objectFormatList - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
 
objectFormatMap - Variable in class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
 
ObjectFormatServiceImpl - Class in org.dataone.service.types.v2.util
 
ObjectFormatServiceImpl() - Constructor for class org.dataone.service.types.v2.util.ObjectFormatServiceImpl
 
ObjectInfo - Class in org.dataone.service.types.v1
Metadata about an object, representing a subset of the metadata found in :class:`Types.SystemMetadata`.
ObjectInfo() - Constructor for class org.dataone.service.types.v1.ObjectInfo
 
ObjectList - Class in org.dataone.service.types.v1
A list of object locations (nodes) from which the object can be retrieved.
ObjectList() - Constructor for class org.dataone.service.types.v1.ObjectList
 
ObjectLocation - Class in org.dataone.service.types.v1
Portion of an :class:`Types.ObjectLocationList` indicating the node from which the object can be retrieved.
ObjectLocation() - Constructor for class org.dataone.service.types.v1.ObjectLocation
 
objectLocation - Variable in class org.dataone.service.types.v1.ObjectLocationList
 
ObjectLocationList - Class in org.dataone.service.types.v1
An *ObjectLocationList* is the structure returned from the :func:`CNRead.resolve` method of the CN REST interface.
ObjectLocationList() - Constructor for class org.dataone.service.types.v1.ObjectLocationList
 
observeCertificateManager() - Method in class org.dataone.client.rest.DefaultHttpMultipartRestClient
 
obsoletedBy - Variable in class org.dataone.service.types.v1.SystemMetadata
 
obsoletes - Variable in class org.dataone.service.types.v1.SystemMetadata
 
ObsoletesChain - Class in org.dataone.client.types
An object meant to contain information on the history of an object, including all of the objects the given pid obsoletes, and objects that obsolete it.
ObsoletesChain(Identifier) - Constructor for class org.dataone.client.types.ObsoletesChain
 
obtainsBackgroundFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
obtainsSupportFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
option - Variable in class org.dataone.service.types.v2.OptionList
 
OptionList - Class in org.dataone.service.types.v2
A list of options that indicate the possible values for a DataONE service.
OptionList() - Constructor for class org.dataone.service.types.v2.OptionList
 
org.dataone.client - package org.dataone.client
 
org.dataone.client.auth - package org.dataone.client.auth
 
org.dataone.client.exception - package org.dataone.client.exception
 
org.dataone.client.rest - package org.dataone.client.rest
 
org.dataone.client.types - package org.dataone.client.types
 
org.dataone.client.utils - package org.dataone.client.utils
 
org.dataone.client.v1 - package org.dataone.client.v1
 
org.dataone.client.v1.examples - package org.dataone.client.v1.examples
 
org.dataone.client.v1.impl - package org.dataone.client.v1.impl
 
org.dataone.client.v1.itk - package org.dataone.client.v1.itk
 
org.dataone.client.v1.types - package org.dataone.client.v1.types
 
org.dataone.client.v2 - package org.dataone.client.v2
 
org.dataone.client.v2.examples - package org.dataone.client.v2.examples
 
org.dataone.client.v2.formats - package org.dataone.client.v2.formats
Package org.dataone.client.formats defines a set of utility classes for accessing information about ObjectFormats that is useful in constructing nodes and clients.
org.dataone.client.v2.impl - package org.dataone.client.v2.impl
 
org.dataone.client.v2.itk - package org.dataone.client.v2.itk
 
org.dataone.client.v2.types - package org.dataone.client.v2.types
 
org.dataone.configuration - package org.dataone.configuration
 
org.dataone.eml - package org.dataone.eml
 
org.dataone.exceptions - package org.dataone.exceptions
 
org.dataone.mimemultipart - package org.dataone.mimemultipart
 
org.dataone.ore - package org.dataone.ore
 
org.dataone.service.cn.v1 - package org.dataone.service.cn.v1
 
org.dataone.service.cn.v2 - package org.dataone.service.cn.v2
 
org.dataone.service.exceptions - package org.dataone.service.exceptions
 
org.dataone.service.mn.tier1.v1 - package org.dataone.service.mn.tier1.v1
 
org.dataone.service.mn.tier1.v2 - package org.dataone.service.mn.tier1.v2
 
org.dataone.service.mn.tier2.v1 - package org.dataone.service.mn.tier2.v1
 
org.dataone.service.mn.tier2.v2 - package org.dataone.service.mn.tier2.v2
 
org.dataone.service.mn.tier3.v1 - package org.dataone.service.mn.tier3.v1
 
org.dataone.service.mn.tier3.v2 - package org.dataone.service.mn.tier3.v2
 
org.dataone.service.mn.tier4.v1 - package org.dataone.service.mn.tier4.v1
 
org.dataone.service.mn.tier4.v2 - package org.dataone.service.mn.tier4.v2
 
org.dataone.service.mn.v1 - package org.dataone.service.mn.v1
 
org.dataone.service.mn.v2 - package org.dataone.service.mn.v2
 
org.dataone.service.types.v1 - package org.dataone.service.types.v1
 
org.dataone.service.types.v1.comparators - package org.dataone.service.types.v1.comparators
 
org.dataone.service.types.v1.util - package org.dataone.service.types.v1.util
 
org.dataone.service.types.v1_1 - package org.dataone.service.types.v1_1
 
org.dataone.service.types.v2 - package org.dataone.service.types.v2
 
org.dataone.service.types.v2.util - package org.dataone.service.types.v2.util
 
org.dataone.service.util - package org.dataone.service.util
 
org.dataone.vocabulary - package org.dataone.vocabulary
 
originMemberNode - Variable in class org.dataone.service.types.v1.SystemMetadata
 

P

parodies - Static variable in class org.dataone.vocabulary.CITO_263
 
parseDocument(InputStream) - Method in class org.dataone.eml.DataoneEMLParser
parse an eml document and return any distribution urls
parseResourceMap(String) - Method in class org.dataone.ore.ResourceMapFactory
Parses the string containing serialized form into the Map representation used by the org.dataone.client.DataPackage class.
parseResourceMap(InputStream) - Method in class org.dataone.ore.ResourceMapFactory
Parses the input stream from the serialized form into the Map representation used by the org.dataone.client.DataPackage class.
PeriodOfTime - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
permission - Variable in class org.dataone.service.types.v1.AccessRule
 
Permission - Enum in org.dataone.service.types.v1
Java class for Permission.
Person - Class in org.dataone.service.types.v1
*Person* represents metadata about a :term:`Principal` that is a person and that can be used by clients and nodes for :class:`Types.AccessPolicy` information.
Person() - Constructor for class org.dataone.service.types.v1.Person
 
person - Variable in class org.dataone.service.types.v1.SubjectInfo
 
PersonFamilyNameComparator - Class in org.dataone.service.types.v1.comparators
A comparator for comparing the Person objects based on the FamilyName property (String).
PersonFamilyNameComparator() - Constructor for class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator
 
PhysicalMedium - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
PhysicalResource - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
ping() - Method in class org.dataone.client.rest.MultipartD1Node
 
ping() - Method in class org.dataone.client.v1.impl.MultipartMNode
 
ping() - Method in class org.dataone.client.v2.impl.MultipartMNode
 
ping() - Method in interface org.dataone.service.cn.v1.CNCore
 
ping() - Method in interface org.dataone.service.cn.v2.CNCore
 
ping() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
 
ping() - Method in interface org.dataone.service.mn.tier1.v2.MNCore
 
ping - Variable in class org.dataone.service.types.v1.Node
 
Ping - Class in org.dataone.service.types.v1
Store results from the :func:`MNCore.ping` method.
Ping() - Constructor for class org.dataone.service.types.v1.Ping
 
plagiarizes - Static variable in class org.dataone.vocabulary.CITO_263
 
Policy - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
Port - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
POST - Static variable in class org.dataone.service.util.Constants
HTTP Verb POST
predicate(String) - Static method in class org.dataone.vocabulary.CITO_263
For a given CITO property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211
For a given DC Terms property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.PROV
For a given PROV property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
predicate(String) - Static method in class org.dataone.vocabulary.ProvONE_V1
For a given ProvONE property string, return a Predicate object with the URI, namespace, and prefix fields set to the default values.
preference - Variable in class org.dataone.service.types.v1.ObjectLocation
 
preferredMemberNode - Variable in class org.dataone.service.types.v1.ReplicationPolicy
 
prefix - Static variable in class org.dataone.vocabulary.CITO_263
 
prefix - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
prefix - Static variable in class org.dataone.vocabulary.PROV
 
prefix - Static variable in class org.dataone.vocabulary.ProvONE_V1
A reasonable ProvONE namespace prefix
previousVersion(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
 
Program - Static variable in class org.dataone.vocabulary.ProvONE_V1
Classes defined in the ProvONE model
properties - Static variable in class org.dataone.vocabulary.CITO_263
 
properties - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
properties - Static variable in class org.dataone.vocabulary.PROV
 
properties - Static variable in class org.dataone.vocabulary.ProvONE_V1
The known object properties in the ProvONE model
property - Variable in class org.dataone.service.types.v2.MediaType
 
property - Variable in class org.dataone.service.types.v2.Node
 
Property - Class in org.dataone.service.types.v2
Additional Property elements can be included to describe the Node in more detail.
Property() - Constructor for class org.dataone.service.types.v2.Property
 
property(String) - Static method in class org.dataone.vocabulary.CITO_263
Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211
Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.PROV
Return a Jena Property instance for the given localName term
property(String) - Static method in class org.dataone.vocabulary.ProvONE_V1
Return a Jena Property instance for the given localName term
PROV - Class in org.dataone.vocabulary
Provides select static terms for the PROV ontology used in ProvONE constructs
PROV() - Constructor for class org.dataone.vocabulary.PROV
 
provenance - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
ProvenanceStatement - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
providesAssertionFor - Static variable in class org.dataone.vocabulary.CITO_263
 
providesConclusionsFor - Static variable in class org.dataone.vocabulary.CITO_263
 
providesDataFor - Static variable in class org.dataone.vocabulary.CITO_263
 
providesExcerptFor - Static variable in class org.dataone.vocabulary.CITO_263
 
providesMethodFor - Static variable in class org.dataone.vocabulary.CITO_263
 
providesQuotationFor - Static variable in class org.dataone.vocabulary.CITO_263
 
ProvONE - Class in org.dataone.vocabulary
Provides static terms for the current (V1) ProvONE extensions to the PROV ontology
ProvONE() - Constructor for class org.dataone.vocabulary.ProvONE
 
ProvONE_V1 - Class in org.dataone.vocabulary
Provides static terms for the ProvONE extensions to the PROV ontology
ProvONE_V1() - Constructor for class org.dataone.vocabulary.ProvONE_V1
 
ProvResourceMapBuilder - Class in org.dataone.ore
A Resource Map builder with methods for adding provenance or other statements about resource in an ORE aggregation.
ProvResourceMapBuilder() - Constructor for class org.dataone.ore.ProvResourceMapBuilder
 
PUBLIC_SUBJECT - Static variable in class org.dataone.service.util.Constants
Deprecated.
publisher - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
PUT - Static variable in class org.dataone.service.util.Constants
HTTP Verb PUT
putNode(NodeReference, D1Node) - Method in class org.dataone.client.NodeLocator
Puts a constructed node into the NodeLocator.

Q

qualifiedAssociation - Static variable in class org.dataone.vocabulary.PROV
 
qualifiedGeneration - Static variable in class org.dataone.vocabulary.PROV
 
qualifiedUsage - Static variable in class org.dataone.vocabulary.PROV
 
qualifies - Static variable in class org.dataone.vocabulary.CITO_263
 
query(Session, String, String) - Method in class org.dataone.client.rest.MultipartD1Node
As with the sister query() method that takes a D1Url, the contents of encodedQuery will be joined to the url with as follows: /{queryEngine}/{encodedQuery} Note: Users will need to provide the '?' where appropriate to mark the beginning of the url-query portion.
query(String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
query(String, String) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
query(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
 
query(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
 
query(String, String) - Method in interface org.dataone.service.mn.v1.MNQuery
 
query(Session, String, String) - Method in interface org.dataone.service.mn.v2.MNQuery
 
queryEngine - Variable in class org.dataone.service.types.v1_1.QueryEngineList
 
QueryEngineDescription - Class in org.dataone.service.types.v1_1
Describes a query engine that can be used to search content on the node.
QueryEngineDescription() - Constructor for class org.dataone.service.types.v1_1.QueryEngineDescription
 
QueryEngineList - Class in org.dataone.service.types.v1_1
A list of query engine names that indicate the possible values for CNRead.getQueryEngineDescription and CNRead.query REST API endpoints.
QueryEngineList() - Constructor for class org.dataone.service.types.v1_1.QueryEngineList
 
queryEngineVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
 
queryField - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
 
QueryField - Class in org.dataone.service.types.v1_1
Schema fragment(s) for this class:
QueryField() - Constructor for class org.dataone.service.types.v1_1.QueryField
 
querySchemaVersion - Variable in class org.dataone.service.types.v1_1.QueryEngineDescription
 

R

rc - Variable in class org.dataone.client.rest.HttpMultipartRestClient
 
recastClientSideExceptionToServiceFailure(Exception) - Static method in class org.dataone.client.utils.ExceptionUtils
A helper function to preserve the stackTrace when catching one error and throwing a new one.
recastDataONEExceptionToServiceFailure(BaseException) - Static method in class org.dataone.client.utils.ExceptionUtils
A helper function for recasting DataONE exceptions to ServiceFailures while preserving the detail code and TraceDetails.
references - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
refreshCache() - Method in class org.dataone.client.v2.formats.ObjectFormatCache
refreshes the cache from the CN or if a CN copy cannot be obtains, temporarily uses a static ObjectFormatList included in the libclient_java jar, accessed via org.dataone.service.types.v2.util.ObjectFormatServiceImpl.
refreshSystemMetadata(Integer) - Method in class org.dataone.client.v1.itk.D1Object
refresh the SystemMetadata of this object, first trying the CN, then the authoritative MN.
refreshSystemMetadata(Integer) - Method in class org.dataone.client.v2.itk.D1Object
refresh the SystemMetadata of this object, first trying the CN, then the authoritative MN.
refutes - Static variable in class org.dataone.vocabulary.CITO_263
 
register(Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
register(Session, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
register(Session, Node) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
register(Node) - Method in interface org.dataone.service.cn.v1.CNRegister
 
register(Session, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
Deprecated.
register(Session, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
 
registerAccount(Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
registerAccount(Session, Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
registerAccount(Session, Person) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
registerAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
registerCertificate(String, X509Certificate, PrivateKey) - Method in class org.dataone.client.auth.CertificateManager
Register certificates to be used by getSSLSocketFactory(subject) for setting up connections, using the subject as the lookup key
registerDefaultCertificate() - Method in class org.dataone.client.auth.CertificateManager
Registers the default certificate into the registry, using first the setLocation or if null, the default CILogon location.
registerSystemMetadata(Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
registerSystemMetadata(Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
 
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
 
relation - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
reload() - Static method in class org.dataone.client.v2.formats.ObjectFormatInfo
Cause the ObjectFormatInfo to reload its data, which enables a calling application to programatically modify the underlying mapping data and then reload the mappings in this class for use without restarting the application.
remove(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Deprecated.
renaming to removeData(Identifier id) for naming consistency with addData, addAndDownloadData
remove(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Deprecated.
renaming to removeData(Identifier id) for naming consistency with addData, addAndDownloadData
removeAccess(Subject[]) - Method in class org.dataone.client.types.AccessPolicyEditor
Removes the specified Subjects from the AccessPolicy
removeAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
removeData(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
Removes a D1Object from the local data store based on its Identifier.
removeData(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
Removes a D1Object from the local data store based on its Identifier.
removeMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
removeMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
removeMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
removeMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
removeMonitor(HttpClientConnectionManager) - Method in class org.dataone.client.utils.HttpConnectionMonitorService
remove a ConnectionManager from monitoring Not sure of the use case for it, since we need to keep all of the ConnectionManagers around until application shutdown, where-upon we close all connection managers.
replaces - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
Replica - Class in org.dataone.service.types.v1
Replica information that describes the existence of a replica of some object managed by the DataONE infrastructure, and its status.
Replica() - Constructor for class org.dataone.service.types.v1.Replica
 
replica - Variable in class org.dataone.service.types.v1.SystemMetadata
 
replicaMemberNode - Variable in class org.dataone.service.types.v1.Replica
 
replicate(SystemMetadata, NodeReference) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
replicate(Session, SystemMetadata, NodeReference) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
replicate(Session, SystemMetadata, NodeReference) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
replicate(SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
 
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
Deprecated.
replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v2.MNReplication
 
replicate - Variable in class org.dataone.service.types.v1.Node
 
replicationAllowed - Variable in class org.dataone.service.types.v1.ReplicationPolicy
 
ReplicationPolicy - Class in org.dataone.service.types.v1
The *ReplicationPolicy* for an object defines if replication should be attempted for this object, and if so, how many replicas should be maintained.
ReplicationPolicy() - Constructor for class org.dataone.service.types.v1.ReplicationPolicy
 
replicationPolicy - Variable in class org.dataone.service.types.v1.SystemMetadata
 
ReplicationPolicyMarshallingAdapter - Class in org.dataone.service.util
 
ReplicationPolicyMarshallingAdapter() - Constructor for class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
 
replicationStatus - Variable in class org.dataone.service.types.v1.Replica
 
ReplicationStatus - Enum in org.dataone.service.types.v1
An enumerated string value indicating the current state of a replica of an object.
replicaVerified - Variable in class org.dataone.service.types.v1.Replica
 
repliesTo - Static variable in class org.dataone.vocabulary.CITO_263
 
reportSubtypesListing(Object, Boolean) - Static method in class org.dataone.service.types.v1.util.TypeCompareUtil
Generates a tabular listing of the field names and values, suitable for display.
requestMapIdentity(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
requestMapIdentity(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
requestMapIdentity(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
requestMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
requires - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
reserveIdentifier(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
reserveIdentifier(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
reserveIdentifier(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
reserveIdentifier(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
 
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
 
resolve(Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
resolve(Session, Identifier) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
resolve(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
resolve(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
 
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNRead
 
resolveMultipart(HttpServletRequest) - Method in class org.dataone.mimemultipart.MultipartRequestResolver
get the parts of a
resource(String) - Static method in class org.dataone.vocabulary.CITO_263
Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.DC_TERMS_080211
Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.PROV
Return a Jena Resource instance for the given localName term
resource(String) - Static method in class org.dataone.vocabulary.ProvONE_V1
Return a Jena Resource instance for the given localName term
RESOURCE_ACCESS - Static variable in class org.dataone.service.util.Constants
AUTHORIZATION API resource which handles access operations
RESOURCE_ACCOUNT_MAPPING - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles account-mapping operations
RESOURCE_ACCOUNT_MAPPING_PENDING - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles account-mapping request operations
RESOURCE_ACCOUNT_VERIFICATION - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles account-verification request operations
RESOURCE_ACCOUNTS - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles account operations
RESOURCE_ARCHIVE - Static variable in class org.dataone.service.util.Constants
Common API resource which handles archive operations
RESOURCE_AUTHORIZATION - Static variable in class org.dataone.service.util.Constants
AUTHORIZATION API Resource which handles authorization checks
RESOURCE_CHECKSUM - Static variable in class org.dataone.service.util.Constants
READ API resource which handles checksum operations
RESOURCE_DIAG_OBJECT - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles diagnostic object echoing operations
RESOURCE_DIAG_SUBJECT - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles diagnostic credential echoing operations
RESOURCE_DIAG_SYSMETA - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles diagnostic sysmeta echoing operations
RESOURCE_ERROR - Static variable in class org.dataone.service.util.Constants
READ API resource which handles synchronization error operations
RESOURCE_FORMATS - Static variable in class org.dataone.service.util.Constants
CORE API Resource which handles object formats operations
RESOURCE_GENERATE - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles identifier generation operations
RESOURCE_GROUPS - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles group-related operations
RESOURCE_GROUPS_REMOVE - Static variable in class org.dataone.service.util.Constants
IDENTITY API resource which handles group-member-remove operations
RESOURCE_LOG - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles logging operations
RESOURCE_META - Static variable in class org.dataone.service.util.Constants
Common API resource which handles SystemMetadata operations
RESOURCE_META_CHANGED - Static variable in class org.dataone.service.util.Constants
Common API resource which handles SystemMetadata update operations
RESOURCE_META_OBSOLETEDBY - Static variable in class org.dataone.service.util.Constants
Common API resource which handles SystemMetadata update operations
RESOURCE_MONITOR_EVENT - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles event monitoring operations
RESOURCE_MONITOR_OBJECT - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles object monitoring operations
RESOURCE_MONITOR_PING - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles ping monitoring operations
RESOURCE_MONITOR_STATUS - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles status monitoring operations
RESOURCE_NODE - Static variable in class org.dataone.service.util.Constants
Common API resource which handles node operations
RESOURCE_OBJECTS - Static variable in class org.dataone.service.util.Constants
Common API resource which handles document operations
RESOURCE_OWNER - Static variable in class org.dataone.service.util.Constants
AUTHORIZATION API Resource which handles owner checks
RESOURCE_PACKAGES - Static variable in class org.dataone.service.util.Constants
Common API resource which handles package operations
RESOURCE_QUERY - Static variable in class org.dataone.service.util.Constants
Common API resource which handles query operations
RESOURCE_RELATIONSHIP - Static variable in class org.dataone.service.util.Constants
READ API resource which handles relationship assertion operations
RESOURCE_REPLICAS - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint representing the replicas collection
RESOURCE_REPLICATE - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replication initiation
RESOURCE_REPLICATION_AUTHORIZED - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replication authorization
RESOURCE_REPLICATION_DELETE_REPLICA - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replica deletes
RESOURCE_REPLICATION_META - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replication metadata updates
RESOURCE_REPLICATION_NOTIFY - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replication status updates
RESOURCE_REPLICATION_POLICY - Static variable in class org.dataone.service.util.Constants
REPLICATION API endpoint that represents replication policy updates
RESOURCE_RESERVE - Static variable in class org.dataone.service.util.Constants
CORE API resource which handles identifier reserving operations
RESOURCE_RESOLVE - Static variable in class org.dataone.service.util.Constants
READ API resource which handles resolve operations
RESOURCE_SEARCH - Static variable in class org.dataone.service.util.Constants
Common API resource which handles search operations
RESOURCE_SYNCHRONIZE - Static variable in class org.dataone.service.util.Constants
API resource which handles synchronize operations
RESOURCE_VIEWS - Static variable in class org.dataone.service.util.Constants
Common API resource which handles view operations
ResourceMapFactory - Class in org.dataone.ore
A utility for serializing and deserializing Resource Maps used by DataONE, following the conventions and constraints detailed in https://purl.dataone.org/architecturev2/design/DataPackage.html Note: DataONE uses the serialized form of ResourceMaps to persist the relationships between metadata objects and the data objects they document, and builds a ResourceMap as an intermediate form to derive the relationships into a simpler "identifier map" representation.
RestClient - Class in org.dataone.client.rest
A generic client class that contains base functionality for making REST calls to remote REST servers.
RestClient(HttpClient) - Constructor for class org.dataone.client.rest.RestClient
Default constructor to create a new instance.
restriction - Variable in class org.dataone.service.types.v1.Service
 
retracts - Static variable in class org.dataone.vocabulary.CITO_263
 
returnable - Variable in class org.dataone.service.types.v1_1.QueryField
 
reviews - Static variable in class org.dataone.vocabulary.CITO_263
 
ridicules - Static variable in class org.dataone.vocabulary.CITO_263
 
rights - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
rightsHolder - Variable in class org.dataone.service.types.v1.Group
 
rightsHolder - Variable in class org.dataone.service.types.v1.SystemMetadata
 
rightsHolder - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
RightsStatement - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
run() - Method in class org.dataone.client.utils.HttpConnectionMonitorService
 

S

Schedule - Class in org.dataone.service.types.v1
The schedule on which :term:`synchronization` will run for a particular node.
Schedule() - Constructor for class org.dataone.service.types.v1.Schedule
 
schedule - Variable in class org.dataone.service.types.v1.Synchronization
 
SCHEME_NAME - Static variable in class org.dataone.client.utils.HttpUtils
 
search(String, D1Url) - Method in class org.dataone.client.v1.impl.MultipartCNode
A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, D1Url) - Method in class org.dataone.client.v1.impl.MultipartCNode
A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode
see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(Session, String, String) - Method in class org.dataone.client.v1.impl.MultipartCNode
see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(String, D1Url) - Method in class org.dataone.client.v2.impl.MultipartCNode
A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, D1Url) - Method in class org.dataone.client.v2.impl.MultipartCNode
A convenience method for creating a search command utilizing the D1Url class for building the value for the query parameter.
search(Session, String, String) - Method in class org.dataone.client.v2.impl.MultipartCNode
see DataONE API Reference This implementation handles URL-escaping for only the "queryType" parameter, and always places a slash ('/') character after it.
search(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
 
search(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNRead
Deprecated.
search(Session, String, String) - Method in interface org.dataone.service.cn.v2.CNRead
 
searchable - Variable in class org.dataone.service.types.v1_1.QueryField
 
sec - Variable in class org.dataone.service.types.v1.Schedule
 
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Finds the nodes in the NodeList that contain the provided Subject.
selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Finds the nodes in the NodeList that contain the provided Subject.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Finds the nodes in the NodeList that are in the provided state.
selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Finds the nodes in the NodeList that match the provided NodeType.
selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Finds the nodes in the NodeList that are in the provided state.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v2.util.NodelistUtil
Finds the nodes in the NodeList that contain services that match the provided serviceName and availability.
selectSession(String) - Method in class org.dataone.client.auth.CertificateManager
Select the X509Session using the provided subjectString to search among the registered certificates.
selectSession(String) - Static method in class org.dataone.client.utils.HttpUtils
 
serialize(int) - Method in exception org.dataone.service.exceptions.BaseException
Serialize the format in XML, JSON, or HTML format.
serializeBigInteger(BigInteger) - Static method in class org.dataone.service.util.BigIntegerMarshaller
 
serializeDateToUTC(Date) - Static method in class org.dataone.service.util.DateTimeMarshaller
convert a date to GMT
serializePackage() - Method in class org.dataone.client.v1.itk.DataPackage
Return an ORE ResourceMap describing this package, serialized as an RDF graph.
serializePackage() - Method in class org.dataone.client.v2.itk.DataPackage
Return an ORE ResourceMap describing this package, serialized as an RDF graph.
serializeResourceMap(ResourceMap) - Method in class org.dataone.ore.ResourceMapFactory
Serialize the ResourceMap
serialVersion - Variable in class org.dataone.service.types.v1.SystemMetadata
 
seriesId - Variable in class org.dataone.service.types.v2.SystemMetadata
 
Service - Class in org.dataone.service.types.v1
The available Dataone Service APIs that are exposed on a Node.
Service() - Constructor for class org.dataone.service.types.v1.Service
 
service - Variable in class org.dataone.service.types.v1.Services
 
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v1.CNCore
 
SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v2.CNCore
 
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v1.MNCore
 
SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v2.MNCore
 
ServiceFailure - Exception in org.dataone.service.exceptions
The DataONE ServiceFailure exception, raised when a requested service was called but failed to execute the service request due to an internal error, such as misconfiguration, or a missing resource such as a missing data connection, etc.
ServiceFailure(String, String) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
 
ServiceFailure(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
 
ServiceFailure(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
 
ServiceFailure(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
 
ServiceMethodRestriction - Class in org.dataone.service.types.v1
Describes an optional restriction policy for a given method.
ServiceMethodRestriction() - Constructor for class org.dataone.service.types.v1.ServiceMethodRestriction
 
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v1.util
Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
 
ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v2.util
Methods for interpreting ServiceMethodRestriction rules
ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v2.util.ServiceMethodRestrictionUtil
 
services - Variable in class org.dataone.service.types.v1.Node
 
Services - Class in org.dataone.service.types.v1
A list of services that are provided by a node.
Services() - Constructor for class org.dataone.service.types.v1.Services
 
Session - Class in org.dataone.service.types.v1
Information about the authenticated session for a service transaction.
Session() - Constructor for class org.dataone.service.types.v1.Session
 
setAccess(Subject[], Permission) - Method in class org.dataone.client.types.AccessPolicyEditor
 
setAccessPolicy(Identifier, AccessPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
setAccessPolicy(Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
 
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
Deprecated.
setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization
Deprecated.
use CNCore.updateSystemMetadata()
setAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'accessPolicy' element value.
setAdditionalInfoList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Set the list of 'additionalInfo' element items.
setAlgorithm(String) - Method in class org.dataone.service.types.v1.Checksum
Set the 'algorithm' attribute value.
setAlgorithmList(List<String>) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Set the list of 'algorithm' element items.
setAllowedNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Set the list of 'allowedNode' element items.
setAllowedObjectFormatList(List<ObjectFormatIdentifier>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Set the list of 'allowedObjectFormat' element items.
setAllowList(List<AccessRule>) - Method in class org.dataone.service.types.v1.AccessPolicy
Set the list of 'allow' element items.
setArchived(Boolean) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'archived' element value.
setAttribute(String, Object) - Method in class org.dataone.mimemultipart.MultipartRequest
 
setAuthoritativeMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'authoritativeMemberNode' element value.
setAvailable(Boolean) - Method in class org.dataone.service.types.v1.Service
Set the 'available' attribute value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.Node
Set the 'baseURL' element value.
setBaseURL(String) - Method in class org.dataone.service.types.v1.ObjectLocation
Set the 'baseURL' element value.
setBaseUrl(String) - Method in class org.dataone.service.util.D1Url
 
setBlockedMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Set the list of 'blockedMemberNode' element items.
setCertificateLocation(String) - Method in class org.dataone.client.auth.CertificateManager
Use this method to set the certificate to point CertificateManager to a certificate at the designated file-path.
setCharacterEncoding(String) - Method in class org.dataone.mimemultipart.MultipartRequest
 
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectInfo
Set the 'checksum' element value.
setChecksum(Checksum) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'checksum' element value.
setCN(String) - Static method in class org.dataone.client.v1.itk.D1Client
Use this method to set the environment via the baseUrl to the environment's Coordinating Node.
setCN(String) - Static method in class org.dataone.client.v2.itk.D1Client
Use this method to set the environment via the baseUrl to the environment's Coordinating Node.
setCode(int) - Method in exception org.dataone.service.exceptions.BaseException
 
setContactSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node
Set the list of 'contactSubject' element items.
setCount(int) - Method in class org.dataone.service.types.v1.MonitorInfo
Set the 'count' element value.
setCount(int) - Method in class org.dataone.service.types.v1.Slice
Set the 'count' attribute value.
setCurrentIdentity(String) - Static method in class org.dataone.client.auth.ClientIdentityManager
uses the value of the property passed to setup the CertificateManager to use the certificate found at that path
setData(byte[]) - Method in class org.dataone.client.v1.itk.D1Object
Deprecated. 
setData(byte[]) - Method in class org.dataone.client.v2.itk.D1Object
Deprecated. 
setDataSource(DataSource) - Method in class org.dataone.client.v1.itk.D1Object
set the DataSource representation of the data
setDataSource(DataSource) - Method in class org.dataone.client.v2.itk.D1Object
set the DataSource representation of the data
setDate(Date) - Method in class org.dataone.service.types.v1.MonitorInfo
Set the 'date' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'dateLogged' element value.
setDateLogged(Date) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'dateLogged' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.ObjectInfo
Set the 'dateSysMetadataModified' element value.
setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'dateSysMetadataModified' element value.
setDateUploaded(Date) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'dateUploaded' element value.
setDefaultTimeout(Integer) - Method in class org.dataone.client.rest.HttpMultipartRestClient
Sets the default timeout parameter: "D1Client.http.default.timeouts.ms" to the given Integer.
setDescription(String) - Method in class org.dataone.service.types.v1.Node
Set the 'description' element value.
setDescription(String) - Method in class org.dataone.service.types.v2.OptionList
Set the 'description' attribute value.
setDescriptionList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryField
Set the list of 'description' element items.
setDetail_code(String) - Method in exception org.dataone.service.exceptions.BaseException
 
setEmailList(List<String>) - Method in class org.dataone.service.types.v1.Person
Set the list of 'email' element items.
setEntryId(String) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'entryId' element value.
setEntryId(String) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'entryId' element value.
setEquivalentIdentityList(List<Subject>) - Method in class org.dataone.service.types.v1.Person
Set the list of 'equivalentIdentity' element items.
setEvent(Event) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'event' element value.
setEvent(String) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'event' element value.
setExtension(String) - Method in class org.dataone.service.types.v2.ObjectFormat
Set the 'extension' element value.
setFamilyName(String) - Method in class org.dataone.service.types.v1.Person
Set the 'familyName' element value.
setFileName(String) - Method in class org.dataone.service.types.v2.SystemMetadata
Set the 'fileName' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectFormat
Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectInfo
Set the 'formatId' element value.
setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'formatId' element value.
setFormatName(String) - Method in class org.dataone.service.types.v1.ObjectFormat
Set the 'formatName' element value.
setFormatType(String) - Method in class org.dataone.service.types.v1.ObjectFormat
Set the 'formatType' element value.
setGivenNameList(List<String>) - Method in class org.dataone.service.types.v1.Person
Set the list of 'givenName' element items.
setGroupList(List<Group>) - Method in class org.dataone.service.types.v1.SubjectInfo
Set the list of 'group' element items.
setGroupName(String) - Method in class org.dataone.service.types.v1.Group
Set the 'groupName' element value.
setHasMemberList(List<Subject>) - Method in class org.dataone.service.types.v1.Group
Set the list of 'hasMember' element items.
setHeader(String, String) - Method in class org.dataone.client.rest.HttpMultipartRestClient
Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638 build time, as shown in https://redmine.dataone.org/issues/7638
setHeader(String, String) - Method in class org.dataone.client.rest.RestClient
Deprecated.
As of release 2.1, due to thread safety issues. Use an HttpRequestInterceptor added to the HttpClient build time, as shown in https://redmine.dataone.org/issues/7638
setHour(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'hour' attribute value.
setHttpClient(Object) - Method in class org.dataone.client.auth.AuthTokenSession
 
setHttpClient(Object) - Method in class org.dataone.client.auth.X509Session
 
setHttpClient(HttpClient) - Method in class org.dataone.client.rest.RestClient
Sets the HttpClient instance used for the connection.
setIdentifier(String) - Method in exception org.dataone.service.exceptions.BaseException
 
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'identifier' element value.
setIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.Node
Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectInfo
Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectLocationList
Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'identifier' element value.
setIdentifier(Identifier) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'identifier' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'ipAddress' element value.
setIpAddress(String) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'ipAddress' element value.
setIsMemberOfList(List<Subject>) - Method in class org.dataone.service.types.v1.Person
Set the list of 'isMemberOf' element items.
setKey(String) - Method in class org.dataone.service.types.v2.OptionList
Set the 'key' attribute value.
setKey(String) - Method in class org.dataone.service.types.v2.Property
Set the 'key' attribute value.
setLastCompleteHarvest(Date) - Method in class org.dataone.service.types.v1.Synchronization
Set the 'lastCompleteHarvest' element value.
setLastHarvested(Date) - Method in class org.dataone.service.types.v1.Synchronization
Set the 'lastHarvested' element value.
setLastSuccess(Date) - Method in class org.dataone.service.types.v1.Ping
Set the 'lastSuccess' attribute value.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v1.Log
Set the list of 'logEntry' element items.
setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v2.Log
Set the list of 'logEntry' element items.
setMaxObjectSize(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Set the 'maxObjectSize' element value.
setMday(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'mday' attribute value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.ObjectFormat
Set the 'mediaType' element value.
setMediaType(MediaType) - Method in class org.dataone.service.types.v2.SystemMetadata
Set the 'mediaType' element value.
setMethodName(String) - Method in class org.dataone.service.types.v1.ServiceMethodRestriction
Set the 'methodName' attribute value.
setMin(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'min' attribute value.
setMon(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'mon' attribute value.
setMonitorInfoList(List<MonitorInfo>) - Method in class org.dataone.service.types.v1.MonitorList
Set the list of 'monitorInfo' element items.
setMultipartRestClient(MultipartRestClient) - Method in class org.dataone.client.auth.AuthTokenSession
 
setMultipartRestClient(MultipartRestClient) - Method in class org.dataone.client.auth.X509Session
 
setMultivalued(Boolean) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'multivalued' element value.
setName(String) - Method in class org.dataone.service.types.v1.Node
Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1.Service
Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'name' element value.
setName(String) - Method in class org.dataone.service.types.v2.MediaType
Set the 'name' attribute value.
setName(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty
Set the 'name' attribute value.
setNodeBaseServiceUrl(String) - Method in class org.dataone.client.rest.MultipartD1Node
Set the service URL for this node.
setNodeId(NodeReference) - Method in interface org.dataone.client.D1Node
Set the NodeId associated with the D1Node
setNodeId(NodeReference) - Method in class org.dataone.client.rest.MultipartD1Node
 
setNodeId(String) - Method in exception org.dataone.service.exceptions.BaseException
Set the node Id string
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.ObjectLocation
Set the 'nodeIdentifier' element value.
setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'nodeIdentifier' element value.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v1.NodeList
Set the list of 'node' element items.
setNodeList(List<Node>) - Method in class org.dataone.service.types.v2.NodeList
Set the list of 'node' element items.
setNodeLocator(NodeLocator) - Static method in class org.dataone.client.v1.itk.D1Client
For testing, we can override the nodeLocator
setNodeLocator(NodeLocator) - Static method in class org.dataone.client.v2.itk.D1Client
For testing, we can override the nodeLocator
setNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.Node
Set the 'nodeReplicationPolicy' element value.
setNodeType(NodeType) - Method in interface org.dataone.client.D1Node
Set the Nodetype for the D1Node
setNodeType(NodeType) - Method in class org.dataone.client.rest.MultipartD1Node
 
setNumberReplicas(Integer) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Set the 'numberReplicas' attribute value.
setObjectFormat(ObjectFormat) - Method in class org.dataone.eml.EMLDocument
set the format of the document
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v1.ObjectFormatList
Set the list of 'objectFormat' element items.
setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v2.ObjectFormatList
Set the list of 'objectFormat' element items.
setObjectInfoList(List<ObjectInfo>) - Method in class org.dataone.service.types.v1.ObjectList
Set the list of 'objectInfo' element items.
setObjectLocationList(List<ObjectLocation>) - Method in class org.dataone.service.types.v1.ObjectLocationList
Set the list of 'objectLocation' element items.
setObsoletedBy(Identifier, Identifier, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setObsoletedBy(Session, Identifier, Identifier, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setObsoletedBy(Session, Identifier, Identifier, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
setObsoletedBy(Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
 
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
Deprecated.
setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v2.CNCore
Deprecated.
the Authoritative Member Node is responsible for obsoleting content using SystemMetadata modifications
setObsoletedBy(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'obsoletedBy' element value.
setObsoletes(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'obsoletes' element value.
setOptionList(List<String>) - Method in class org.dataone.service.types.v2.OptionList
Set the list of 'option' element items.
setOriginMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'originMemberNode' element value.
setPackageId(Identifier) - Method in class org.dataone.client.v1.itk.DataPackage
 
setPackageId(Identifier) - Method in class org.dataone.client.v2.itk.DataPackage
 
setPermissionList(List<Permission>) - Method in class org.dataone.service.types.v1.AccessRule
Set the list of 'permission' element items.
setPersonList(List<Person>) - Method in class org.dataone.service.types.v1.SubjectInfo
Set the list of 'person' element items.
setPid(String) - Method in exception org.dataone.service.exceptions.BaseException
Deprecated.
As of release 2.4, replaced by #setIdentifier()
setPing(Ping) - Method in class org.dataone.service.types.v1.Node
Set the 'ping' element value.
setPreference(Integer) - Method in class org.dataone.service.types.v1.ObjectLocation
Set the 'preference' element value.
setPreferredMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Set the list of 'preferredMemberNode' element items.
setPropertyList(List<MediaTypeProperty>) - Method in class org.dataone.service.types.v2.MediaType
Set the list of 'property' element items.
setPropertyList(List<Property>) - Method in class org.dataone.service.types.v2.Node
Set the list of 'property' element items.
setPublicAccess() - Method in class org.dataone.client.types.AccessPolicyEditor
 
setPublicAccess(Session) - Method in class org.dataone.client.v1.itk.D1Object
Change the object to publicly readable
setPublicAccess(Session) - Method in class org.dataone.client.v2.itk.D1Object
Change the object to publicly readable
setQueryEngineList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineList
Set the list of 'queryEngine' element items.
setQueryEngineVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Set the 'queryEngineVersion' element value.
setQueryFieldList(List<QueryField>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Set the list of 'queryField' element items.
setQuerySchemaVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Set the 'querySchemaVersion' element value.
setReplicaList(List<Replica>) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the list of 'replica' element items.
setReplicaMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.Replica
Set the 'replicaMemberNode' element value.
setReplicate(boolean) - Method in class org.dataone.service.types.v1.Node
Set the 'replicate' attribute value.
setReplicationAllowed(Boolean) - Method in class org.dataone.service.types.v1.ReplicationPolicy
Set the 'replicationAllowed' attribute value.
setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
 
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
Deprecated.
setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v2.CNReplication
Deprecated.
use CNCore.updateSystemMetadata()
setReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'replicationPolicy' element value.
setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
 
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
Deprecated.
setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v2.CNReplication
 
setReplicationStatus(ReplicationStatus) - Method in class org.dataone.service.types.v1.Replica
Set the 'replicationStatus' element value.
setReplicaVerified(Date) - Method in class org.dataone.service.types.v1.Replica
Set the 'replicaVerified' element value.
setResource(String) - Method in class org.dataone.service.util.D1Url
 
setResourceMap(ResourceMap) - Method in class org.dataone.client.v1.itk.DataPackage
Set the internally stored resource map
setResourceMap(ResourceMap) - Method in class org.dataone.client.v2.itk.DataPackage
Set the internally stored resource map
setRestrictionList(List<ServiceMethodRestriction>) - Method in class org.dataone.service.types.v1.Service
Set the list of 'restriction' element items.
setReturnable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'returnable' element value.
setRightsHolder(Identifier, Subject, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setRightsHolder(Session, Identifier, Subject, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
setRightsHolder(Session, Identifier, Subject, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
setRightsHolder(Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
 
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
Deprecated.
setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v2.CNAuthorization
Deprecated.
use CNCore.updateSystemMetadata()
setRightsHolder(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'rightsHolder' element value.
setRightsHolderList(List<Subject>) - Method in class org.dataone.service.types.v1.Group
Set the list of 'rightsHolder' element items.
setSchedule(Schedule) - Method in class org.dataone.service.types.v1.Synchronization
Set the 'schedule' element value.
setSearchable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'searchable' element value.
setSec(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'sec' attribute value.
setSerialVersion(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'serialVersion' element value.
setSeriesId(Identifier) - Method in class org.dataone.service.types.v2.SystemMetadata
Set the 'seriesId' element value.
setServiceList(List<Service>) - Method in class org.dataone.service.types.v1.Services
Set the list of 'service' element items.
setServices(Services) - Method in class org.dataone.service.types.v1.Node
Set the 'services' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.ObjectInfo
Set the 'size' element value.
setSize(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'size' element value.
setSortable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'sortable' element value.
setSpaceAllocated(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Set the 'spaceAllocated' element value.
setStart(int) - Method in class org.dataone.service.types.v1.Slice
Set the 'start' attribute value.
setState(NodeState) - Method in class org.dataone.service.types.v1.Node
Set the 'state' attribute value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Group
Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Person
Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v1.Session
Set the 'subject' element value.
setSubject(Subject) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'subject' element value.
setSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.Session
Set the 'subjectInfo' element value.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.AccessRule
Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node
Set the list of 'subject' element items.
setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.SubjectList
Set the list of 'subject' element items.
setSubmitter(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata
Set the 'submitter' element value.
setSuccess(Boolean) - Method in class org.dataone.service.types.v1.Ping
Set the 'success' attribute value.
setSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.Node
Set the 'synchronization' element value.
setSynchronize(boolean) - Method in class org.dataone.service.types.v1.Node
Set the 'synchronize' attribute value.
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v1.itk.D1Object
 
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v1.itk.DataPackage
Set the SystemMetadata object to this data package.
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v2.itk.D1Object
 
setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.v2.itk.DataPackage
Set the SystemMetadata object to this data package.
Settings - Class in org.dataone.configuration
 
SettingsContextNodeLocator - Class in org.dataone.client.v1.impl
This implementation of NodeLocator uses property defined in the configuration to determine the NodeList to use for the mapping NodeReferences to baseUrls.
SettingsContextNodeLocator() - Constructor for class org.dataone.client.v1.impl.SettingsContextNodeLocator
Creates a NodeLocator using DefaultHttpMultipartRestClient.
SettingsContextNodeLocator(MultipartRestClient) - Constructor for class org.dataone.client.v1.impl.SettingsContextNodeLocator
 
SettingsContextNodeLocator - Class in org.dataone.client.v2.impl
This implementation of NodeLocator uses property defined in the configuration to determine the NodeList to use for the mapping NodeReferences to baseUrls.
SettingsContextNodeLocator() - Constructor for class org.dataone.client.v2.impl.SettingsContextNodeLocator
Creates a NodeLocator using DefaultHttpMultipartRestClient.
SettingsContextNodeLocator(MultipartRestClient) - Constructor for class org.dataone.client.v2.impl.SettingsContextNodeLocator
 
setTotal(int) - Method in class org.dataone.service.types.v1.Slice
Set the 'total' attribute value.
setType(NodeType) - Method in class org.dataone.service.types.v1.Node
Set the 'type' attribute value.
setType(String) - Method in class org.dataone.service.types.v1_1.QueryField
Set the 'type' element value.
setType(String) - Method in class org.dataone.service.types.v2.Property
Set the 'type' attribute value.
setupSSL_v4_1(AbstractHttpClient, X509Session) - Static method in class org.dataone.client.utils.HttpUtils
Provided to assist with backwards compatibility with v4.1.x era DefaultHttpClient (now deprecated).
setUrl(String) - Method in class org.dataone.service.types.v1.ObjectLocation
Set the 'url' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v1.LogEntry
Set the 'userAgent' element value.
setUserAgent(String) - Method in class org.dataone.service.types.v2.LogEntry
Set the 'userAgent' element value.
setValue(String) - Method in class org.dataone.service.types.v1.Checksum
Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v1.Identifier
Set the 'Identifier' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.NodeReference
Set the 'NodeReference' complexType value.
setValue(String) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
Set the 'ObjectFormatIdentifier' simpleType value.
setValue(String) - Method in class org.dataone.service.types.v1.Subject
Set the 'Subject' complexType value.
setValue(String) - Method in class org.dataone.service.types.v2.MediaTypeProperty
Set the extension value.
setValue(String) - Method in class org.dataone.service.types.v2.Property
Set the extension value.
setVerified(Boolean) - Method in class org.dataone.service.types.v1.Person
Set the 'verified' element value.
setVersion(String) - Method in class org.dataone.service.types.v1.Service
Set the 'version' attribute value.
setVersionList(List<String>) - Method in class org.dataone.service.types.v1.ObjectLocation
Set the list of 'version' element items.
setWday(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'wday' attribute value.
setYear(String) - Method in class org.dataone.service.types.v1.Schedule
Set the 'year' attribute value.
sharesAuthorInstitutionWith - Static variable in class org.dataone.vocabulary.CITO_263
 
sharesAuthorsWith - Static variable in class org.dataone.vocabulary.CITO_263
 
sharesFundingAgencyWith - Static variable in class org.dataone.vocabulary.CITO_263
 
shutdownConnectionManagers() - Method in class org.dataone.client.utils.HttpConnectionMonitorService
 
SimpleHttpGetClient - Class in org.dataone.client.v1.examples
A class to do a straightforward HTTP GET request and stream the response to stdout.
SimpleHttpGetClient() - Constructor for class org.dataone.client.v1.examples.SimpleHttpGetClient
 
SimpleMultipartEntity - Class in org.dataone.mimemultipart
 
SimpleMultipartEntity() - Constructor for class org.dataone.mimemultipart.SimpleMultipartEntity
 
size() - Method in class org.dataone.client.types.ObsoletesChain
returns the size of the chain (count of the number of items)
size() - Method in class org.dataone.client.v1.itk.DataPackage
Used to introspect on the local temporary data store, NOT the number of DataPackage members.
size() - Method in class org.dataone.client.v2.itk.DataPackage
Used to introspect on the local temporary data store, NOT the number of DataPackage members.
size - Variable in class org.dataone.service.types.v1.ObjectInfo
 
size - Variable in class org.dataone.service.types.v1.SystemMetadata
 
sizeAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the number of 'additionalInfo' element items.
sizeAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
Get the number of 'algorithm' element items.
sizeAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the number of 'allowedNode' element items.
sizeAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
Get the number of 'allowedObjectFormat' element items.
sizeAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
Get the number of 'allow' element items.
sizeBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the number of 'blockedMemberNode' element items.
sizeContactSubjectList() - Method in class org.dataone.service.types.v1.Node
Get the number of 'contactSubject' element items.
sizeDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
Get the number of 'description' element items.
sizeEmailList() - Method in class org.dataone.service.types.v1.Person
Get the number of 'email' element items.
sizeEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
Get the number of 'equivalentIdentity' element items.
sizeGivenNameList() - Method in class org.dataone.service.types.v1.Person
Get the number of 'givenName' element items.
sizeGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
Get the number of 'group' element items.
sizeHasMemberList() - Method in class org.dataone.service.types.v1.Group
Get the number of 'hasMember' element items.
sizeIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
Get the number of 'isMemberOf' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v1.Log
Get the number of 'logEntry' element items.
sizeLogEntryList() - Method in class org.dataone.service.types.v2.Log
Get the number of 'logEntry' element items.
sizeMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
Get the number of 'monitorInfo' element items.
sizeNodeList() - Method in class org.dataone.service.types.v1.NodeList
Get the number of 'node' element items.
sizeNodeList() - Method in class org.dataone.service.types.v2.NodeList
Get the number of 'node' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
Get the number of 'objectFormat' element items.
sizeObjectFormatList() - Method in class org.dataone.service.types.v2.ObjectFormatList
Get the number of 'objectFormat' element items.
sizeObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
Get the number of 'objectInfo' element items.
sizeObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
Get the number of 'objectLocation' element items.
sizeOptionList() - Method in class org.dataone.service.types.v2.OptionList
Get the number of 'option' element items.
SizeOrDuration - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
sizePermissionList() - Method in class org.dataone.service.types.v1.AccessRule
Get the number of 'permission' element items.
sizePersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
Get the number of 'person' element items.
sizePreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
Get the number of 'preferredMemberNode' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.MediaType
Get the number of 'property' element items.
sizePropertyList() - Method in class org.dataone.service.types.v2.Node
Get the number of 'property' element items.
sizeQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
Get the number of 'queryEngine' element items.
sizeQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
Get the number of 'queryField' element items.
sizeReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
Get the number of 'replica' element items.
sizeRestrictionList() - Method in class org.dataone.service.types.v1.Service
Get the number of 'restriction' element items.
sizeRightsHolderList() - Method in class org.dataone.service.types.v1.Group
Get the number of 'rightsHolder' element items.
sizeServiceList() - Method in class org.dataone.service.types.v1.Services
Get the number of 'service' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.Node
Get the number of 'subject' element items.
sizeSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
Get the number of 'subject' element items.
sizeVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
Get the number of 'version' element items.
Slice - Class in org.dataone.service.types.v1
An abstract type used as a common base for other types that need to include *count*, *start*, and *total* attributes to indicate which slice of a list is represented by a set of records.The first element in a list is always index 0, i.e.
Slice() - Constructor for class org.dataone.service.types.v1.Slice
 
sortable - Variable in class org.dataone.service.types.v1_1.QueryField
 
source - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
spaceAllocated - Variable in class org.dataone.service.types.v1.NodeReplicationPolicy
 
spatial - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
speculatesOn - Static variable in class org.dataone.vocabulary.CITO_263
 
Standard - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
standardizeDN(String) - Method in class org.dataone.client.auth.CertificateManager
Returns D1-wide consistent Subject DN string representations
start - Variable in class org.dataone.service.types.v1.Slice
 
startAsync() - Method in class org.dataone.mimemultipart.MultipartRequest
 
startAsync(ServletRequest, ServletResponse) - Method in class org.dataone.mimemultipart.MultipartRequest
 
state - Variable in class org.dataone.service.types.v1.Node
 
STD_CONFIG_PATH - Static variable in class org.dataone.configuration.Settings
 
subject - Variable in class org.dataone.service.types.v1.AccessRule
 
subject - Variable in class org.dataone.service.types.v1.Group
 
subject - Variable in class org.dataone.service.types.v1.LogEntry
 
subject - Variable in class org.dataone.service.types.v1.Node
 
subject - Variable in class org.dataone.service.types.v1.Person
 
subject - Variable in class org.dataone.service.types.v1.Session
 
Subject - Class in org.dataone.service.types.v1
An identifier for a Person (user), Group, Organization, or System.The :term:`Subject` is a string that provides a formal name to identify a user or group in the DataONE Identity Management Service.
Subject() - Constructor for class org.dataone.service.types.v1.Subject
 
subject - Variable in class org.dataone.service.types.v2.LogEntry
 
subject - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
SUBJECT_AUTHENTICATED_USER - Static variable in class org.dataone.service.util.Constants
 
SUBJECT_PUBLIC - Static variable in class org.dataone.service.util.Constants
 
SUBJECT_VERIFIED_USER - Static variable in class org.dataone.service.util.Constants
 
subjectInfo - Variable in class org.dataone.service.types.v1.Session
 
SubjectInfo - Class in org.dataone.service.types.v1
A list of :term:`Subjects`, including both :class:`Types.Person` and :class:`Types.Group` entries returned from the :func:`CNIdentity.getSubjectInfo` service and :func:`CNIdentity.listSubjects` services.
SubjectInfo() - Constructor for class org.dataone.service.types.v1.SubjectInfo
 
SubjectList - Class in org.dataone.service.types.v1
A list of :term:`Subjects` used for identity/group management Schema fragment(s) for this class:
SubjectList() - Constructor for class org.dataone.service.types.v1.SubjectList
 
submitter - Variable in class org.dataone.service.types.v1.SystemMetadata
 
success - Variable in class org.dataone.service.types.v1.Ping
 
supportedFormatIdentifiers - Static variable in class org.dataone.eml.DataoneEMLParser
 
supportedNamespaceSummary - Static variable in class org.dataone.eml.DataoneEMLParser
 
supports - Static variable in class org.dataone.vocabulary.CITO_263
 
synchronization - Variable in class org.dataone.service.types.v1.Node
 
Synchronization - Class in org.dataone.service.types.v1
Configuration information for the process by which metadata is harvested from Member Nodes to Coordinating Nodes, including the schedule on which harvesting should occur, and information about the last :term:`synchronization` attempts for the node.
Synchronization() - Constructor for class org.dataone.service.types.v1.Synchronization
 
synchronizationFailed(SynchronizationFailed) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
synchronizationFailed(Session, SynchronizationFailed) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
synchronizationFailed(Session, SynchronizationFailed) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
SynchronizationFailed - Exception in org.dataone.service.exceptions
The DataONE SynchronizationFailed exception, used as a callback message to a Member Node from a Coordinating Node when an attempt to synchronize some object fails.
SynchronizationFailed(String, String) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
 
SynchronizationFailed(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
 
SynchronizationFailed(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
 
SynchronizationFailed(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
 
synchronizationFailed(SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
 
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
Deprecated.
synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
synchronize(Session, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
synchronize(Session, Identifier) - Method in interface org.dataone.service.cn.v2.CNCore
 
synchronize - Variable in class org.dataone.service.types.v1.Node
 
SystemMetadata - Class in org.dataone.service.types.v1
System metadata (often referred to as :term:`sysmeta`) is the information used by DataONE to track and manage objects across the distributed Coordinating and Member Nodes of the network.
SystemMetadata() - Constructor for class org.dataone.service.types.v1.SystemMetadata
 
SystemMetadata - Class in org.dataone.service.types.v2
System metadata in DataONE APIs version 2.0 extends the :class:`types.SystemMetadata` definition of version 1.x by adding :term:`seriesId`, :term:`mediaType`, and :term:`fileName` elements.
SystemMetadata() - Constructor for class org.dataone.service.types.v2.SystemMetadata
 
systemMetadataChanged(Session, Identifier, long, Date) - Method in class org.dataone.client.rest.MultipartD1Node
 
systemMetadataChanged(Identifier, long, Date) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier1.v2.MNRead
 
systemMetadataChanged(Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
 
systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
Deprecated.
SystemMetadataDateModifiedComparator - Class in org.dataone.service.types.v1.comparators
A Comparator that compares two SystemMetadata objects base on the DateSystemMetadataModified property (Date) Note: this comparator imposes orderings that are inconsistent with equals.
SystemMetadataDateModifiedComparator() - Constructor for class org.dataone.service.types.v1.comparators.SystemMetadataDateModifiedComparator
 
SystemMetadataDateUploadedComparator - Class in org.dataone.service.types.v1.comparators
A Comparator that compares two SystemMetadata objects based on the DateUploaded property (Date) Note: this comparator imposes orderings that are inconsistent with equals.
SystemMetadataDateUploadedComparator() - Constructor for class org.dataone.service.types.v1.comparators.SystemMetadataDateUploadedComparator
 

T

tableOfContents - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
TEMP_DIR - Static variable in class org.dataone.service.util.Constants
Deprecated.
this is OS-specific and should not be used
temporal - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
throttleIntervalSec - Static variable in class org.dataone.client.v2.formats.ObjectFormatCache
 
title - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
toString() - Method in class org.dataone.service.util.D1Url
 
total - Variable in class org.dataone.service.types.v1.Slice
 
trimAndValidateString(String) - Static method in class org.dataone.service.util.D1Url
 
type - Variable in class org.dataone.service.types.v1.Node
 
type - Variable in class org.dataone.service.types.v1_1.QueryField
 
type - Variable in class org.dataone.service.types.v2.Property
 
type - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
TypeCompareUtil - Class in org.dataone.service.types.v1.util
This utility class provides an efficient way to test bean-style data objects (of the same type) for differences in property values.
TypeCompareUtil() - Constructor for class org.dataone.service.types.v1.util.TypeCompareUtil
 
TypeFactory - Class in org.dataone.service.types.v1
A Factory class for building, cloning, and converting common DataONE types.
TypeFactory() - Constructor for class org.dataone.service.types.v1.TypeFactory
 
TypeFactory - Class in org.dataone.service.types.v2
 
TypeFactory() - Constructor for class org.dataone.service.types.v2.TypeFactory
 
TypeMarshaller - Class in org.dataone.service.util
The standard class used to marshal and unmarshal datatypes to and from input and output streams and file structures.
TypeMarshaller() - Constructor for class org.dataone.service.util.TypeMarshaller
 

U

unmarshal(AccessPolicy) - Method in class org.dataone.service.util.AccessPolicyMarshallingAdapter
 
unmarshal(AccessRule) - Method in class org.dataone.service.util.AccessRuleMarshallingAdapter
 
unmarshal(String) - Method in class org.dataone.service.util.DateMarshallingAdapter
 
unmarshal(ReplicationPolicy) - Method in class org.dataone.service.util.ReplicationPolicyMarshallingAdapter
 
unmarshalTypeFromFile(Class<T>, File) - Static method in class org.dataone.service.util.TypeMarshaller
Unmarshals the contents of the filenamePath into the specified domainClass.
unmarshalTypeFromFile(Class<T>, String) - Static method in class org.dataone.service.util.TypeMarshaller
Unmarshalls the contents of file parameter to the specified domainClass
unmarshalTypeFromStream(Class<T>, InputStream) - Static method in class org.dataone.service.util.TypeMarshaller
Unmarshals the inputStream to the specified domainClass and unequivocally closes the passed in InputStream .
UnsupportedMetadataType - Exception in org.dataone.service.exceptions
The DataONE UnsupportedMetadataType exception, raised when the science metadata document submitted is not of a type that is recognized by the DataONE system.
UnsupportedMetadataType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
 
UnsupportedMetadataType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
 
UnsupportedMetadataType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
 
UnsupportedMetadataType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedMetadataType
 
UnsupportedType - Exception in org.dataone.service.exceptions
The DataONE UnsupportedType exception, raised when the information presented appears to be unsupported.
UnsupportedType(String, String) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
 
UnsupportedType(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
 
UnsupportedType(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
 
UnsupportedType(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.UnsupportedType
 
update(Observable, Object) - Method in class org.dataone.client.rest.DefaultHttpMultipartRestClient
Updates the RestClient with new Session and certificate information from the CertificateManager.
update(Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v1.impl.MultipartMNode
 
update(Session, D1Object) - Static method in class org.dataone.client.v1.itk.D1Client
Perform an update an object in DataONE with the given D1Object on the originMemberNode contained in its systemMetadata.
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
update(Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
 
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
Deprecated.
update(Session, Identifier, InputStream, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
 
updateAccount(Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateAccount(Session, Person) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateAccount(Session, Person) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
updateAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
updateAccount(Session, Person) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
updateGroup(Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateGroup(Session, Group) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateGroup(Session, Group) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
updateGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
updateGroup(Session, Group) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
updateNodeCapabilities(NodeReference, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateNodeCapabilities(Session, NodeReference, Node) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateNodeCapabilities(Session, NodeReference, Node) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
updateNodeCapabilities(NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
 
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
Deprecated.
updateNodeCapabilities(Session, NodeReference, Node) - Method in interface org.dataone.service.cn.v2.CNRegister
 
updateReplicationMetadata(Identifier, Replica, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
updateReplicationMetadata(Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication
 
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v1.CNReplication
Deprecated.
updateReplicationMetadata(Session, Identifier, Replica, long) - Method in interface org.dataone.service.cn.v2.CNReplication
 
updates - Static variable in class org.dataone.vocabulary.CITO_263
 
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartD1Node
 
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v2.CNCore
 
updateSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v2.MNStorage
 
uploadDataPackages(MNode, File) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload
Uploads data packages in rootDir to targetMN.
uploadDataPackageWithRetry(MNode, File, int) - Method in class org.dataone.client.v1.examples.ExampleDataPackageUpload
Uploads data package in tmpDir to targetMN.
url - Variable in class org.dataone.eml.EMLDocument.DistributionMetadata
 
url - Variable in class org.dataone.service.types.v1.ObjectLocation
 
Usage - Static variable in class org.dataone.vocabulary.PROV
 
USE_CACHING_CLIENT - Static variable in class org.dataone.client.utils.HttpUtils
 
USE_SCHEMA_VALIDATION - Static variable in class org.dataone.service.util.TypeMarshaller
 
used - Static variable in class org.dataone.vocabulary.PROV
 
User - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
userAgent - Variable in class org.dataone.service.types.v1.LogEntry
 
userAgent - Variable in class org.dataone.service.types.v2.LogEntry
 
usesConclusionsFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
usesDataFrom - Static variable in class org.dataone.vocabulary.CITO_263
 
usesMethodIn - Static variable in class org.dataone.vocabulary.CITO_263
 
usingFallbackFormatList - Static variable in class org.dataone.client.v2.formats.ObjectFormatCache
 

V

valid - Static variable in class org.dataone.vocabulary.DC_TERMS_080211
 
validateAgainstSchema(Object) - Static method in class org.dataone.service.util.TypeMarshaller
A method to validate DataONE types against the schemas registered with the TypeMarshaller.
validateRequest(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Static method in class org.dataone.client.v1.itk.D1Object
Check the given set of input arguments that they are all valid and not null, and that string values are not null and of non-zero length.
validateRequest(Identifier, byte[], ObjectFormatIdentifier, Subject, NodeReference) - Static method in class org.dataone.client.v2.itk.D1Object
Check the given set of input arguments that they are all valid and not null, and that string values are not null and of non-zero length.
validateResourceMap(ResourceMap) - Method in class org.dataone.ore.ResourceMapFactory
Validate the ResourceMap against DataONE constraints (use of CN_Read.resolve, identifier triple defined, identifier matching URI, aggregation resource using {resourceMapID}#aggregation)
value - Variable in class org.dataone.service.types.v1.Checksum
 
value - Variable in class org.dataone.service.types.v1.Identifier
 
value - Variable in class org.dataone.service.types.v1.NodeReference
 
value - Variable in class org.dataone.service.types.v1.ObjectFormatIdentifier
 
value - Variable in class org.dataone.service.types.v1.Subject
 
value - Variable in class org.dataone.service.types.v2.MediaTypeProperty
 
value - Variable in class org.dataone.service.types.v2.Property
 
valueOf(String) - Static method in enum org.dataone.service.types.v1.Event
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeState
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.NodeType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.Permission
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.dataone.service.types.v1.Event
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeState
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.NodeType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.Permission
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.dataone.service.types.v1.ReplicationStatus
Returns an array containing the constants of this enum type, in the order they are declared.
verified - Variable in class org.dataone.service.types.v1.Person
 
verify(X509Certificate, X509Certificate) - Static method in class org.dataone.client.auth.CertificateManager
 
verify(X509Certificate, X509Certificate, boolean) - Static method in class org.dataone.client.auth.CertificateManager
Check the validity of a certificate, and be sure that it is verifiable using the given CA certificate.
verifyAccount(Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
verifyAccount(Session, Subject) - Method in class org.dataone.client.v1.impl.MultipartCNode
 
verifyAccount(Session, Subject) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
verifyAccount(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
 
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
Deprecated.
verifyAccount(Session, Subject) - Method in interface org.dataone.service.cn.v2.CNIdentity
 
version - Variable in class org.dataone.service.types.v1.ObjectLocation
 
version - Variable in class org.dataone.service.types.v1.Service
 
VersionMismatch - Exception in org.dataone.service.exceptions
The DataONE VersionMismatch exception, raised when the serialVersion supplied with the request does not match the serialVersion of the target
VersionMismatch(String, String) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
 
VersionMismatch(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
 
VersionMismatch(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
 
VersionMismatch(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.VersionMismatch
 
view(Session, String, Identifier) - Method in class org.dataone.client.rest.MultipartD1Node
 
view(Session, String, Identifier) - Method in class org.dataone.client.v2.impl.MultipartCNode
 
view(Session, String, Identifier) - Method in class org.dataone.client.v2.impl.MultipartMNode
 
view(Session, String, Identifier) - Method in interface org.dataone.service.cn.v2.CNView
 
view(Session, String, Identifier) - Method in interface org.dataone.service.mn.v2.MNView
 
Visualization - Static variable in class org.dataone.vocabulary.ProvONE_V1
 

W

wasAssociatedWith - Static variable in class org.dataone.vocabulary.PROV
 
wasDerivedFrom - Static variable in class org.dataone.vocabulary.PROV
 
wasGeneratedBy - Static variable in class org.dataone.vocabulary.PROV
 
wasInformedBy - Static variable in class org.dataone.vocabulary.PROV
 
wasPartOf - Static variable in class org.dataone.vocabulary.ProvONE_V1
 
wday - Variable in class org.dataone.service.types.v1.Schedule
 
Workflow - Static variable in class org.dataone.vocabulary.ProvONE_V1
 

X

X509Session - Class in org.dataone.client.auth
A subclass of Session to hide the complexities of certificate and connection management from users.
x509Session - Variable in class org.dataone.client.rest.HttpMultipartRestClient
 
xmlValue() - Method in enum org.dataone.service.types.v1.Event
 
xmlValue() - Method in enum org.dataone.service.types.v1.NodeState
 
xmlValue() - Method in enum org.dataone.service.types.v1.NodeType
 
xmlValue() - Method in enum org.dataone.service.types.v1.Permission
 
xmlValue() - Method in enum org.dataone.service.types.v1.ReplicationStatus
 

Y

year - Variable in class org.dataone.service.types.v1.Schedule
 
A B C D E F G H I J K L M N O P Q R S T U V W X Y 
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