ÄïÎ]������ådocutils.nodesîådocumentîìî)Åî}î(å	rawsourceîå�îåchildrenî]îh�åsectionîìî)Åî}î(hhh]î(h�åtitleîìî)Åî}î(håIntroductionîh]îh�åTextîìîåIntroductionîÖîÅî}î(hhåparentîhh
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hhåW/var/lib/jenkins/jobs/metacat_beta/workspace/metacat/docs/user/metacat/source/intro.rstîhKubh�å	paragraphîìî)Åî}î(hXÊ
��Metacat is a repository for data and metadata (descriptions of data) that helps
scientists find, understand and effectively use the data sets they manage or
that have been created by others. Thousands of data sets are currently
documented in a standardized way and stored in Metacat systems, providing the
scientific community with a broad range of science data that--because the
data are well and consistently described--can be easily searched, compared,
merged, or used in other ways.îh]îhXË
��Metacat is a repository for data and metadata (descriptions of data) that helps
scientists find, understand and effectively use the data sets they manage or
that have been created by others. Thousands of data sets are currently
documented in a standardized way and stored in Metacat systems, providing the
scientific community with a broad range of science data that–because the
data are well and consistently described–can be easily searched, compared,
merged, or used in other ways.îÖîÅî}î(hh/hh-h
hhNhNubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKhhh
hubh,)Åî}î(hX1��Not only is the Metacat repository a reliable place to store metadata and data
(the database is replicated over a secure connection so that every record is
stored on multiple machines and no data is ever lost to technical failures), it
provides a user-friendly interface for information entry and retrieval.
Scientists can search the repository via the Web using a customizable search
form. Searches return results based on user-specified criteria, such as desired
geographic coverage, taxonomic coverage, and/or keywords that appear in places
such as the data set's title or owner's name. Users need only click a linked
search result to open the corresponding data-set documentation in a browser
window and discover whom to contact to obtain the data themselves (or how to
immediately download the data via the Web).îh]îhX5��Not only is the Metacat repository a reliable place to store metadata and data
(the database is replicated over a secure connection so that every record is
stored on multiple machines and no data is ever lost to technical failures), it
provides a user-friendly interface for information entry and retrieval.
Scientists can search the repository via the Web using a customizable search
form. Searches return results based on user-specified criteria, such as desired
geographic coverage, taxonomic coverage, and/or keywords that appear in places
such as the data set’s title or owner’s name. Users need only click a linked
search result to open the corresponding data-set documentation in a browser
window and discover whom to contact to obtain the data themselves (or how to
immediately download the data via the Web).îÖîÅî}î(hh=hh;h
hhNhNubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKhhh
hubh,)Åî}î(hX‚��Metacat's user-friendly Registry application allows data providers to enter
data set documentation into Metacat using a Web form. When the form is
submitted, Metacat compiles the provided documentation into the required format
and saves it. Information providers need never work directly with the XML_
format in which the metadata are stored or with the database records themselves. In
addition, the Metacat application can easily be extended to provide a
customized data-entry interface that suits the particular requirements of each
project. Metacat users can also choose to enter metadata using the Morpho
application, which provides data entry wizards that guide information providers
through the process of documenting each data set.îh]î(hX+
��Metacat‚Äôs user-friendly Registry application allows data providers to enter
data set documentation into Metacat using a Web form. When the form is
submitted, Metacat compiles the provided documentation into the required format
and saves it. Information providers need never work directly with the îÖîÅî}î(hX)
��Metacat's user-friendly Registry application allows data providers to enter
data set documentation into Metacat using a Web form. When the form is
submitted, Metacat compiles the provided documentation into the required format
and saves it. Information providers need never work directly with the îhhIh
hhNhNubh�å	referenceîìî)Åî}î(håXML_îh]îhåXMLîÖîÅî}î(hhhhTubah}î(h]îh!]îh#]îh%]îh']îånameîåXMLîårefuriîå http://en.wikipedia.org/wiki/XMLîuh)hRhhIåresolvedîK
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format in which the metadata are stored or with the database records themselves. In
addition, the Metacat application can easily be extended to provide a
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format in which the metadata are stored or with the database records themselves. In
addition, the Metacat application can easily be extended to provide a
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project. Metacat users can also choose to enter metadata using the Morpho
application, which provides data entry wizards that guide information providers
through the process of documenting each data set.îhhIh
hhNhNubeh}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKhhh
hubh,)Åî}î(hX|��The metadata stored in Metacat includes all of the information needed
to understand what the described data are and how to use them: a
descriptive data set title; an abstract; the temporal, spatial, and taxonomic
coverage of the data; the data collection methods; distribution information;
and contact information. Each information provider decides who has access to
this information (the public, or just specified users), and whether or not to
upload the data set itself with the data documentation. Information providers
can also edit the metadata or delete it from the repository, again using
Metacat's straightforward Web interface.îh]îhX~��The metadata stored in Metacat includes all of the information needed
to understand what the described data are and how to use them: a
descriptive data set title; an abstract; the temporal, spatial, and taxonomic
coverage of the data; the data collection methods; distribution information;
and contact information. Each information provider decides who has access to
this information (the public, or just specified users), and whether or not to
upload the data set itself with the data documentation. Information providers
can also edit the metadata or delete it from the repository, again using
Metacat‚Äôs straightforward Web interface.îÖîÅî}î(hhthhrh
hhNhNubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hK#hhh
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��Metacat is a `Java servlet`_ application that runs on Linux and  Mac OS
platforms in conjunction with a database, such as
PostgreSQL_, a Web server, and a Solr server.
The Metacat application stores data in an XML_ format using `Ecological
Metadata Language`_ (EML) or other metadata standards such as `ISO 19139`_ or the
`FGDC Biological Data Profile`_. For more
information about Metacat or for examples of projects currently using Metacat,
please see http://knb.ecoinformatics.org.îh]î(hå
Metacat is a îÖîÅî}î(hå
Metacat is a îhhÄh
hhNhNubhS)Åî}î(hå`Java servlet`_îh]îhåJava servletîÖîÅî}î(hhhhâubah}î(h]îh!]îh#]îh%]îh']îånameîåJava servletîhdå)http://en.wikipedia.org/wiki/Java_Servletîuh)hRhhÄhfK
ubhå^ application that runs on Linux and  Mac OS
platforms in conjunction with a database, such as
îÖîÅî}î(hå^ application that runs on Linux and  Mac OS
platforms in conjunction with a database, such as
îhhÄh
hhNhNubhS)Åî}î(håPostgreSQL_îh]îhå
PostgreSQLîÖîÅî}î(hhhhüubah}î(h]îh!]îh#]îh%]îh']îånameîå
PostgreSQLîhdåhttp://www.postgresql.org/îuh)hRhhÄhfK
ubhåM, a Web server, and a Solr server.
The Metacat application stores data in an îÖîÅî}î(håM, a Web server, and a Solr server.
The Metacat application stores data in an îhhÄh
hhNhNubhS)Åî}î(håXML_îh]îhåXMLîÖîÅî}î(hhhhµubah}î(h]îh!]îh#]îh%]îh']îånameîåXMLîhdheuh)hRhhÄhfK
ubhå format using îÖîÅî}î(hå format using îhhÄh
hhNhNubhS)Åî}î(hå`Ecological
Metadata Language`_îh]îhåEcological
Metadata LanguageîÖîÅî}î(hhhh ubah}î(h]îh!]îh#]îh%]îh']îånameîåEcological Metadata Languageîhdå*http://knb.ecoinformatics.org/software/emlîuh)hRhhÄhfK
ubhå+ (EML) or other metadata standards such as îÖîÅî}î(hå+ (EML) or other metadata standards such as îhhÄh
hhNhNubhS)Åî}î(hå`ISO 19139`_îh]îhå	ISO 19139îÖîÅî}î(hhhh‡ubah}î(h]îh!]îh#]îh%]îh']îånameîå	ISO 19139îhdå-http://marinemetadata.org/references/iso19139îuh)hRhhÄhfK
ubhå or the
îÖîÅî}î(hå or the
îhhÄh
hhNhNubhS)Åî}î(hå`FGDC Biological Data Profile`_îh]îhåFGDC Biological Data ProfileîÖîÅî}î(hhhhˆubah}î(h]îh!]îh#]îh%]îh']îånameîåFGDC Biological Data ProfileîhdåShttp://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadataîuh)hRhhÄhfK
ubhåe. For more
information about Metacat or for examples of projects currently using Metacat,
please see îÖîÅî}î(håe. For more
information about Metacat or for examples of projects currently using Metacat,
please see îhhÄh
hhNhNubhS)Åî}î(håhttp://knb.ecoinformatics.orgîh]îhåhttp://knb.ecoinformatics.orgîÖîÅî}î(hhhj
��ubah}î(h]îh!]îh#]îh%]îh']îårefuriîj
��uh)hRhhÄubhå
.îÖîÅî}î(hå
.îhhÄh
hhNhNubeh}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hK-hhh
hubh�åtargetîìî)Åî}î(hå).. _XML: http://en.wikipedia.org/wiki/XMLîh]îh}î(h]îåxmlîah!]îh#]îåxmlîah%]îh']îhdheuh)j&
��hK6hhh
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ubj'
��)Åî}î(hå;.. _Java servlet: http://en.wikipedia.org/wiki/Java_Servletîh]îh}î(h]îåjava-servletîah!]îh#]îåjava servletîah%]îh']îhdhôuh)j&
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��hK<hhh
hhh*ubj'
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��hKBhhh
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ubh
)Åî}î(hhh]î(h)Åî}î(håWhat's in this Guideîh]îhåWhat‚Äôs in this GuideîÖîÅî}î(hjÉ
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��h
hhNhNubah}î(h]îh!]îh#]îh%]îh']îuh)hhj~
��h
hhh*hKEubh,)Åî}î(hXO��This Administrator's guide includes information for installing, configuring,
managing and extending Metacat for Ubuntu and other Linux variants. Metacat
can run on MacOS but it needs users' customized installation.
Chapter Four contains instructions for downloading and installing Metacat and the
applications required to run the software on Linux platform.
Chapter Five covers how to configure Metacat, both for new and upgraded
installations. Chapter Seven details the ways in which you can customize the
Metacat interface so users can access and submit information easily: using
Metacat's generic web-interface (the Registry), creating your own HTML forms,
and creating your own desktop client (like Morpho). Chapter Eight discusses how
to work with Metacat's embedded Geoserver. Chapter Nine describes how to set up the
Metacat's replication service, which permits Metacat servers to share data with
each other, effectively backing up metadata and data files. Chapter Ten looks
at the Metacat Harvester, a program that automates the retrieval of EML
documents from one or more sites and their subsequent upload (insert or update)
to Metacat. Chapter Eight discusses logging, Chapter Twelve contains instructions
for creating a site map, which makes individual metadata entries available via
Web searches. Metacat's `Java API`_ is available for developers.îh]î(hX3��This Administrator‚Äôs guide includes information for installing, configuring,
managing and extending Metacat for Ubuntu and other Linux variants. Metacat
can run on MacOS but it needs users’ customized installation.
Chapter Four contains instructions for downloading and installing Metacat and the
applications required to run the software on Linux platform.
Chapter Five covers how to configure Metacat, both for new and upgraded
installations. Chapter Seven details the ways in which you can customize the
Metacat interface so users can access and submit information easily: using
Metacat’s generic web-interface (the Registry), creating your own HTML forms,
and creating your own desktop client (like Morpho). Chapter Eight discusses how
to work with Metacat’s embedded Geoserver. Chapter Nine describes how to set up the
Metacat’s replication service, which permits Metacat servers to share data with
each other, effectively backing up metadata and data files. Chapter Ten looks
at the Metacat Harvester, a program that automates the retrieval of EML
documents from one or more sites and their subsequent upload (insert or update)
to Metacat. Chapter Eight discusses logging, Chapter Twelve contains instructions
for creating a site map, which makes individual metadata entries available via
Web searches. Metacat‚Äôs îÖîÅî}î(hX'��This Administrator's guide includes information for installing, configuring,
managing and extending Metacat for Ubuntu and other Linux variants. Metacat
can run on MacOS but it needs users' customized installation.
Chapter Four contains instructions for downloading and installing Metacat and the
applications required to run the software on Linux platform.
Chapter Five covers how to configure Metacat, both for new and upgraded
installations. Chapter Seven details the ways in which you can customize the
Metacat interface so users can access and submit information easily: using
Metacat's generic web-interface (the Registry), creating your own HTML forms,
and creating your own desktop client (like Morpho). Chapter Eight discusses how
to work with Metacat's embedded Geoserver. Chapter Nine describes how to set up the
Metacat's replication service, which permits Metacat servers to share data with
each other, effectively backing up metadata and data files. Chapter Ten looks
at the Metacat Harvester, a program that automates the retrieval of EML
documents from one or more sites and their subsequent upload (insert or update)
to Metacat. Chapter Eight discusses logging, Chapter Twelve contains instructions
for creating a site map, which makes individual metadata entries available via
Web searches. Metacat's îhjè
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hhh*hK\ubh,)Åî}î(hå—Metacat is a repository for data and metadata (documentation about data), that
helps scientists find, understand and effectively use the data sets they manage or
that have been created by others. Specifically,îh]îhå—Metacat is a repository for data and metadata (documentation about data), that
helps scientists find, understand and effectively use the data sets they manage or
that have been created by others. Specifically,îÖîÅî}î(hj€
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hubh�åbullet_listîìî)Åî}î(hhh]î(h�å	list_itemîìî)Åî}î(håtMetacat is an open source web application, which can run on Linux and MacOS operating systems and is written in Javaîh]îh,)Åî}î(hj
��h]îhåtMetacat is an open source web application, which can run on Linux and MacOS operating systems and is written in JavaîÖîÅî}î(hj
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��)Åî}î(håCMetacat's Web interface facilitates the input and retrieval of dataîh]îh,)Åî}î(hj��h]îhåEMetacat‚Äôs Web interface facilitates the input and retrieval of dataîÖîÅî}î(hj��hj	��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKbhj��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håwMetacat's optional mapping functionality enables you to query and visualize the geographic coverage of stored data setsîh]îh,)Åî}î(hj��h]îhåyMetacat‚Äôs optional mapping functionality enables you to query and visualize the geographic coverage of stored data setsîÖîÅî}î(hj��hj ��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKchj��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håuMetacat's replication feature ensures that all Metacat data and metadata is stored safely on multiple Metacat serversîh]îh,)Åî}î(hj5��h]îhåwMetacat‚Äôs replication feature ensures that all Metacat data and metadata is stored safely on multiple Metacat serversîÖîÅî}î(hj5��hj7��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKdhj3��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håëThe Metacat interface can be easily extended and customized via Web forms, themes, and/or user-developed client tools in Java and other languagesîh]îh,)Åî}î(hjL��h]îhåëThe Metacat interface can be easily extended and customized via Web forms, themes, and/or user-developed client tools in Java and other languagesîÖîÅî}î(hjL��hjN��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKehjJ��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håjThe Metacat harvester automates the process of retrieving and storing EML documents from one or more sitesîh]îh,)Åî}î(hjc��h]îhåjThe Metacat harvester automates the process of retrieving and storing EML documents from one or more sitesîÖîÅî}î(hjc��hje��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKfhja��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håjMetacat can be customized to use Life Sciences Identifiers (LSIDs), uniquely identifying every data recordîh]îh,)Åî}î(hjz��h]îhåjMetacat can be customized to use Life Sciences Identifiers (LSIDs), uniquely identifying every data recordîÖîÅî}î(hjz��hj|��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKghjx��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(hårMetacat has a built-in logging system for tracking events such as document insertions, updates, deletes, and readsîh]îh,)Åî}î(hjë��h]îhårMetacat has a built-in logging system for tracking events such as document insertions, updates, deletes, and readsîÖîÅî}î(hjë��hjì��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKhhjè��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håGThe appearance of Metacat's Web interface can be customized via themes.îh]îh,)Åî}î(hj®��h]îhåIThe appearance of Metacat‚Äôs Web interface can be customized via themes.îÖîÅî}î(hj®��hj™��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKihj¶��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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��)Åî}î(håáMetacat fully supports the DataONE Member Node interface, allowing Metacat deployments to easily participate in the DataONE federation
îh]îh,)Åî}î(håÜMetacat fully supports the DataONE Member Node interface, allowing Metacat deployments to easily participate in the DataONE federationîh]îhåÜMetacat fully supports the DataONE Member Node interface, allowing Metacat deployments to easily participate in the DataONE federationîÖîÅî}î(hj√��hj¡��ubah}î(h]îh!]îh#]îh%]îh']îuh)h+hh*hKjhjΩ��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÏ
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îh]îh}î(h]îh!]îh#]îh%]îh']îåuriîåimages/screenshots/image007.pngîå
candidatesî}îj‹��jÔ��suh)j‚��hjfl��hh*hKnubh�åcaptionîìî)Åî}î(håMMetacat's default home page. Users can customize the appearance using themes.îh]îhåOMetacat‚Äôs default home page. Users can customize the appearance using themes.îÖîÅî}î(hjˆ��hjÙ��ubah}î(h]îh!]îh#]îh%]îh']îuh)jÚ��hh*hKnhjfl��ubeh}î(h]îåid1îah!]îh#]îh%]îh']îuh)j›��hKnhj»
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