<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY cc "http://creativecommons.org/ns#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY dc "http://purl.org/dc/elements/1.1#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboe-taxa "http://ecoinformatics.org/oboe/oboe.1.0/oboe-taxa.owl#" >
<!ENTITY oboe-core "http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#" >
]>
<rdf:RDF xmlns="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#"
xml:base="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl"
xmlns:dc="http://purl.org/dc/elements/1.1#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
xmlns:oboe-taxa="http://ecoinformatics.org/oboe/oboe.1.0/oboe-taxa.owl#"
xmlns:oboe-core="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cc="http://creativecommons.org/ns#">
<owl:Ontology rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl">
<rdfs:label>OBOE Ecology</rdfs:label>
<rdfs:comment>This ontology contains biological terms that are common across OBOE extensions. It is not comprehensive, but rather the beginnings of a general biological ontology.</rdfs:comment>
<owl:versionInfo>Version 1.0</owl:versionInfo>
<rdfs:comment>Copyright (c) 2006-2011 The Regents of the University of California. All rights reserved. This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.</rdfs:comment>
<owl:imports rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl"/>
<owl:imports rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-taxa.owl"/>
</owl:Ontology>
<!--
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//
// Annotation properties
//
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-->
<owl:AnnotationProperty rdf:about="&dc;description"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
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-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Adult -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Adult">
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#AdultStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#AdultStageFish">
<rdfs:label xml:lang="en">Adult Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Adult"/>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental stage as an adult.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Alevin -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Alevin">
<rdfs:label xml:lang="en">Alevin</rdfs:label>
<owl:equivalentClass rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#AlevinStageFish"/>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">Larval fish that have hatched but retain the yolk sac.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#AlevinStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#AlevinStageFish">
<rdfs:label xml:lang="en">Alevin Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental stage as an alevin.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Algae -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Algae">
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description>A general term for members of several groups of non-flowering, usually photosynthetic, often aquatic, eukaryotic organisms ranging from unicellular to large multicellular forms. They lack true roots, stems and leaves characteristic of terrestrial plants. Most definitions do not include prokaryots (e.g., cyanobacteria) .
Taxonomically, these belong to several taxonomic groups often classified as Protista (itself a catch-all term), which are mostly phytosynthetic. The singular form, alga, is less common
[various sources].</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#DeadOrganism -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#DeadOrganism">
<rdfs:label xml:lang="en">Dead Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<owl:disjointWith rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#LivingOrganism"/>
<dc:description xml:lang="en">An organism no longer able to sustain life.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Egg -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Egg">
<rdfs:label xml:lang="en">Egg</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description xml:lang="en">A fertilised ovum, or zygote, and its surrounding material.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#EggStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#EggStageFish">
<rdfs:label xml:lang="en">Egg Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Egg"/>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental stage as an egg.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Gametophyte -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Gametophyte">
<rdfs:label>Gametophyte</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description>In plants, gametophytes are haploid (1n) and produce gametes by mitosis. Two gamets fuse to become a zygote. The relationship between gametophyte and sprophyte varies among different groups of plants and algae. For more information, look up "alternation of generations"</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#LivingOrganism -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#LivingOrganism">
<rdfs:label xml:lang="en">Living Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description xml:lang="en">An organism able to sustain life.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism">
<rdfs:label xml:lang="en">Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<dc:description xml:lang="en">An individual life form.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/dsw/IndividualOrganism"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Parr -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Parr">
<rdfs:label xml:lang="en">Parr</rdfs:label>
<owl:equivalentClass rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#ParrStageFish"/>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#ParrStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#ParrStageFish">
<rdfs:label xml:lang="en">Parr Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental life stage as a parr.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Smolt -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Smolt">
<rdfs:label xml:lang="en">Smolt</rdfs:label>
<owl:equivalentClass rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#SmoltStageFish"/>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#SmoltStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#SmoltStageFish">
<rdfs:label xml:lang="en">Smolt Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental stage as a smolt.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Sporophyte -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Sporophyte">
<rdfs:label>Sporophyte</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description>In plants, sprophytes have diploid (2n) cells, and mature individuals divide by meiosis to produce haploid (n) spores. The relationship between gametophyte and sprophyte varies among different groups of plants and algae. For more information, look up "alternation of generations". In many algae, the sporophyte is the dominant generation.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Subadult -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Subadult">
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#SubadultStageFish -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#SubadultStageFish">
<rdfs:label xml:lang="en">Subadult Stage Fish</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-taxa;Fish"/>
<dc:description xml:lang="en">A fish categorized in a developmental stage as subadults.</dc:description>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Zygote -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Zygote">
<rdfs:label xml:lang="en">Zygote</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism"/>
<dc:description xml:lang="en">A fertilized cell (the combined ovum and sperm gametes).</dc:description>
</owl:Class>
</rdf:RDF>
<!-- Generated by the OWL API (version 3.2.2.1785) http://owlapi.sourceforge.net -->