<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY cc "http://creativecommons.org/ns#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY dc "http://purl.org/dc/elements/1.1#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboe-core "http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#" >
]>
<rdf:RDF xmlns="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#"
xml:base="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl"
xmlns:dc="http://purl.org/dc/elements/1.1#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
xmlns:oboe-core="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cc="http://creativecommons.org/ns#">
<owl:Ontology rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl">
<rdfs:label>OBOE Anatomy</rdfs:label>
<owl:versionInfo>Version 1.0</owl:versionInfo>
<rdfs:comment>Copyright (c) 2006-2011 The Regents of the University of California. All rights reserved. This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.</rdfs:comment>
<rdfs:comment xml:lang="en">This ontology contains terms related to general anatomical concepts that are common across OBOE extensions. The model is derived from the Common Anatomical Reference Ontology (CARO). The lead author of CARO is Melissa Haendel, obo-anatomy@lists.sourceforge.net</rdfs:comment>
<owl:imports rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl"/>
</owl:Ontology>
<!--
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//
// Annotation properties
//
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-->
<owl:AnnotationProperty rdf:about="&dc;description"/>
<!--
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//
// Datatypes
//
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<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
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-->
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AcellularAnatomicalStructure -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AcellularAnatomicalStructure">
<rdfs:label xml:lang="en">Acellular Anatomical Structure</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000040"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalCluster -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalCluster">
<rdfs:label xml:lang="en">Anatomical Cluster</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalGroup"/>
<dc:description xml:lang="en">Anatomical group that has its parts adjacent to one another.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000041"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalEntity -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalEntity">
<rdfs:label xml:lang="en">Anatomical Entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<rdfs:comment xml:lang="en">See the Common Anatomy Reference Ontology (CARO)</rdfs:comment>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalGroup -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalGroup">
<rdfs:label xml:lang="en">Anatomical Group</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000054"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalLine -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalLine">
<rdfs:label xml:lang="en">Anatomical Line</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000008"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSpace -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSpace">
<rdfs:label xml:lang="en">Anatomical Space</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000005"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure">
<rdfs:label xml:lang="en">Anatomical Structure</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MaterialAnatomicalEntity"/>
<dc:description xml:lang="en">Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000003"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSurface -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSurface">
<rdfs:label xml:lang="en">Anatomical Surface</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000010"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSystem -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalSystem">
<rdfs:label xml:lang="en">Anatomical System</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalGroup"/>
<dc:description xml:lang="en">Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000011"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Anatomical_Point -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Anatomical_Point">
<rdfs:label xml:lang="en">Anatomical Point</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000009"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CavitatedCompoundOrgan -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CavitatedCompoundOrgan">
<rdfs:label xml:lang="en">Cavitated Compound Organ</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CompoundOrgan"/>
<dc:description xml:lang="en">Compound organ that contains one or more macroscopic anatomical spaces.</dc:description>
<dc:description rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000072"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Cell -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Cell">
<rdfs:label xml:lang="en">Cell</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000013"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CellComponent -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CellComponent">
<rdfs:label xml:lang="en">Cell Component</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000014"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CompoundOrgan -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CompoundOrgan">
<rdfs:label xml:lang="en">Compound Organ</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000024"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ExtraembryonicStructure -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ExtraembryonicStructure">
<rdfs:label xml:lang="en">Extraembryonic Structure</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000042"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#ImmaterialAnatomicalEntity">
<rdfs:label xml:lang="en">Immaterial Anatomical Entity</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000007"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MaterialAnatomicalEntity -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MaterialAnatomicalEntity">
<rdfs:label xml:lang="en">Material Anatomical Entity</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalEntity"/>
<dc:description xml:lang="en">Anatomical entity that has mass.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000006"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MultiCellularOrganism -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MultiCellularOrganism">
<rdfs:label xml:lang="en">Multi-Cellular Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000012"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MultiTissueStructure -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MultiTissueStructure">
<rdfs:label xml:lang="en">Multi-Tissue Structure</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000055"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#OrgansimSubdivision -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#OrgansimSubdivision">
<rdfs:label xml:lang="en">Organism Subdivision</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Subdivision of whole organism. The mereological sum of these is the whole organism.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000032"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Otolith -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Otolith">
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AcellularAnatomicalStructure"/>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfOrganismSubstance"/>
<rdfs:comment xml:lang="en">Otolith</rdfs:comment>
<dc:description xml:lang="en">Portion of organism substance composed of calcium carbonate located in the otolith organ.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/TAO#TAO_0001621"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfCellSubstance -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfCellSubstance">
<rdfs:label xml:lang="en">Portion Of Cell Substance</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfOrganismSubstance"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000063"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfOrganismSubstance -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfOrganismSubstance">
<rdfs:label xml:lang="en">Portion Of Organism Substance</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#MaterialAnatomicalEntity"/>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000004"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfTissue -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#PortionOfTissue">
<rdfs:label xml:lang="en">Portion Of Tissue</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalStructure"/>
<dc:description xml:lang="en">Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.</dc:description>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000043"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Stomach -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#Stomach">
<rdfs:label xml:lang="en">Stomach</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#CavitatedCompoundOrgan"/>
<oboe-core:similarConceptAsClass xml:lang="en">An organ that is part of the digestive or alimentary system used to digest food.</oboe-core:similarConceptAsClass>
<oboe-core:similarConceptAsClass rdf:resource="http://purl.org/obo/owl/TAO#TAO_0002121"/>
</owl:Class>
<!-- http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#SurfaceStructure -->
<owl:Class rdf:about="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#SurfaceStructure">
<rdfs:label xml:lang="en">Surface Structure</rdfs:label>
<rdfs:subClassOf rdf:resource="http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#OrgansimSubdivision"/>
<dc:description xml:lang="en">Anatomical Structures associated with the surface of the organism.</dc:description>
</owl:Class>
</rdf:RDF>
<!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->