<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY odo "http://purl.dataone.org/odo/" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY obo "http://purl.obolibrary.org/obo/" >
<!ENTITY dc "http://purl.org/dc/elements/1.1/" >
<!ENTITY ecso "http://purl.dataone.org/odo/ECSO_" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY skos "http://www.w3.org/2004/02/skos/core#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
<!ENTITY skosdl "http://www.w3.org/TR/skos-reference/skos-owl1-dl#" >
<!ENTITY oboe-core "http://ecoinformatics.org/oboe/oboe.1.1/oboe-core.owl#" >
<!ENTITY oboe-characteristics "http://ecoinformatics.org/oboe/oboe.1.1/oboe-characteristics.owl#" >
]>
<rdf:RDF xmlns="&odo;ECSO_"
xml:base="&odo;ECSO_"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:skosdl="http://www.w3.org/TR/skos-reference/skos-owl1-dl#"
xmlns:ecso="&odo;ECSO_"
xmlns:oboe-characteristics="http://ecoinformatics.org/oboe/oboe.1.1/oboe-characteristics.owl#"
xmlns:odo="http://purl.dataone.org/odo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:oboe-core="http://ecoinformatics.org/oboe/oboe.1.1/oboe-core.owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#">
<owl:Ontology rdf:about="&odo;ECSO_">
<rdfs:label>The Ecosystems Ontology</rdfs:label>
<dc:contributor rdf:datatype="&xsd;string">Chase LeCroy, orcid.org/0000-0002-1338-9436</dc:contributor>
<dc:date rdf:datatype="&xsd;dateTime">Mar 31, 2015 2:04:13 PM</dc:date>
<dc:contributor rdf:datatype="&xsd;string">Margaret O'Brien, orcid.org/0000-0002-1693-8322</dc:contributor>
<dc:contributor rdf:datatype="&xsd;string">Mark Schildhauer, orcid.org/0000-0003-0632-7576</dc:contributor>
<dc:contributor rdf:datatype="&xsd;string">Matthew B. Jones, http://orcid.org/0000-0003-0077-4738</dc:contributor>
<rdfs:comment rdf:datatype="&rdfs;Literal">Revised version: DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases. Collaborative work of: Margaret O'Brien, Sophie Hou, Chase LeCroy, and Mark Schildhauer</rdfs:comment>
<dc:contributor rdf:datatype="&xsd;string">SophieHou, orcid.org/0000-0002-8087-1775</dc:contributor>
<rdfs:comment rdf:datatype="&xsd;string">This ontology was generated from an ontology revision in WebProtege http://odo.nceas.ucsb.edu</rdfs:comment>
<rdfs:comment rdf:datatype="&xsd;string">ontology in progress for DataONE MSTMip/LTER Carbon cycling use cases</rdfs:comment>
<dc:contributor rdf:datatype="&xsd;string">system</dc:contributor>
<owl:versionInfo>0.9</owl:versionInfo>
<owl:imports rdf:resource="http://ecoinformatics.org/oboe/oboe.1.1/oboe.owl"/>
<!--<owl:imports rdf:resource="http://purl.dataone.org/odo/d1-generated-ECSO.owl"/>-->
<owl:imports rdf:resource="http://purl.dataone.org/obo/ENVO_import.owl"/>
<owl:imports rdf:resource="http://purl.dataone.org/obo/PATO_import.owl"/>
<owl:imports rdf:resource="http://purl.dataone.org/obo/UO_import.owl"/>
<owl:imports rdf:resource="http://www.w3.org/TR/skos-reference/skos-owl1-dl.rdf"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<owl:AnnotationProperty rdf:about="&rdfs;label">
<rdfs:label>rdfs:label</rdfs:label>
<skos:definition>rdfs:label is an instance of rdf:Property that may be used to provide a human-readable version of a resource's name</skos:definition>
<odo:ECSO_01000005>O'Brien, 2015-02-19</odo:ECSO_01000005>
<odo:ECSO_01000004>rdfs:label is a built in annotation property, and W3C does not give guidelines beyond the definition. In the DataONe Carbon Flux ontology, we use rdfs:label for a human-readable version of the resource's name, but adhere to a particular pattern. Our goal is that content of rdfs:label are not broken into individual terms arbitrarily.
1. Our practice is to separate individual words in the rdfs:label with underscores, but maintain capitalization consistent with the conventions of the resources type (e.g., camel case for properties, capitalized words for classes, capitalized abbreviations and acronyms).
2. include namespace in the label, if resource is imported.
See example_Of_Usage, presentation_Label</odo:ECSO_01000004>
<odo:ECSO_01000007>Carbon_Flux_NASA, definition_Source, rdfs:label</odo:ECSO_01000007>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003 rdf:resource="http://www.w3.org/TR/rdf-schema/#ch_label"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&rdfs;comment"/>
<owl:AnnotationProperty rdf:about="&owl;deprecated"/>
<owl:AnnotationProperty rdf:about="&rdfs;seeAlso"/>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000001">
<rdfs:label>definition_Contributor</rdfs:label>
<skos:definition>"contributor" is an OWL "Annotation property" that names the person contributing the content, so s/he can be contacted, especially during development.</skos:definition>
<odo:ECSO_01000004>The "contributor" Annotation Property" is to record the name of the those contributing to the resource.
If there is any potential ambiguity, an identifier should be added, including the system to which it belongs.</odo:ECSO_01000004>
<odo:ECSO_01000007>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000007>
<odo:ECSO_01000003>O'Brien, pers comm. 2015-02-15</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322, Shild</odo:ECSO_01000001>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&dc;contributor"/>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000005">
<rdfs:label>description_Source</rdfs:label>
<skos:definition>"description_Source" is the Annotation property that can be used to provide the reference source or Authority, as an ISBN,DOI, bibliographic citation, etc. to the source of the "description" contained in an associated "description" Annotation property that is attached (annotated) to some concept.
Ideally a descriptionSource is structured in a well-known and accepted format, that provides an unambiguous pointer to a source reference, but often even some accurate indication of a reference source is better than nothing at all.
As description Annotation properties are often not as rigorous, and hence looser and more verbose than definition Annotation properties, these fields may be more readily used for informal pedagogical advice and direction rather than being proscriptive</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
<odo:ECSO_01000005>Schildhauer, pers comm, 05Feb2015, orcid.org/0000-0003-0632-7576</odo:ECSO_01000005>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&rdfs;isDefinedBy"/>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000004">
<rdfs:label>description</rdfs:label>
<skos:definition rdf:datatype="&rdfs;Literal">"description" is an OWL "Annotation property" that contains a a more verbose, less prescriptive natural language explication of the concept to which it is attached (or applied, or annotated) in contrast to a "definition" Annotation property.
Use the "definition" Annotation property for scientific concepts when possible, as opposed to the "description" Annotation property</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
<odo:ECSO_01000003>Schildhauer, pers comm, 05Feb2014, orcid.org/0000-000300632-7576</odo:ECSO_01000003>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000003">
<rdfs:label rdf:datatype="&rdfs;Literal">definition_Source</rdfs:label>
<odo:ECSO_01000003>Schildhauer, pers comm, 05Feb2015, orcid.org/0000-0003-0632-7576</odo:ECSO_01000003>
<skos:definition>"definitionSource" is the Annotation property that can be used to provide the reference source or Authority for the "definition" (of interest), as an ISBN,DOI, bibliographic citation, etc. to the source of the "definition" contained in an associated "definition" Annotation property that is attached (annotated) to the concept.
Ideally a definition Source is structured in a well-known and accepted format, that provides an unambiguous pointer to a source reference, but often even some accurate indication of a reference source is better than nothing at all.</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&dc;date"/>
<owl:AnnotationProperty rdf:about="&skos;definition"/>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000008">
<rdfs:label>has_Related_Synonym</rdfs:label>
<odo:ECSO_01000005>Margaret O'Brien, 2015-03-18</odo:ECSO_01000005>
<odo:ECSO_01000001>mobb</odo:ECSO_01000001>
<odo:ECSO_01000003>ad hoc!</odo:ECSO_01000003>
<rdfs:seeAlso>has_Exact_Synonym</rdfs:seeAlso>
<odo:ECSO_01000004>The DataONE carbon flux ontology uses synonyms for terms that may not be well defined. But we know that they are used, and refer to an owl class. I.e., a concept can have a synonym, but a concept should not be a synonym.</odo:ECSO_01000004>
<skos:definition>has_Related_Synonym is an owl annotation property to hold a term that is not an owl class, but is a primary term found in the literature but is not necessarily correct.</skos:definition>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000007">
<rdfs:label>example_Of_Usage</rdfs:label>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>O'Brien, pers comm, 2015-02-19</odo:ECSO_01000003>
<odo:ECSO_01000004>"example_Of_Usage" is for providing examples. It should contain actual sample strings for the resource it applies to. longer, text descriptions of good practice for the resource belong in the "description" annotation.</odo:ECSO_01000004>
<skos:definition>"example_Of_Usage" is an OWL annotation property to record examples of how the concept or property should be used.</skos:definition>
<odo:ECSO_01000005>O'Brien, pers comm, 2015-02-19</odo:ECSO_01000005>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="&odo;ECSO_01000006">
<rdfs:label>has_Exact_Synonym</rdfs:label>
<rdfs:comment>We are not planning to use has_Broad_Synonym or has_Narrow_Synonym at this time. although other ontologies do. the concepts of "broad" and "narrow" imply relationships that could be better described with the class hierarchy.</rdfs:comment>
<skos:definition>has_Exact_Synonym is an OWL annotation property that holds an alternate name or lexical variant of an owl class.</skos:definition>
<odo:ECSO_01000001>mobb</odo:ECSO_01000001>
<odo:ECSO_01000005>Margaret O'Brien, 2015-03-18</odo:ECSO_01000005>
<odo:ECSO_01000003>ad hoc</odo:ECSO_01000003>
<odo:ECSO_01000004>The DataONE carbon flux ontology uses synonyms for terms that may not be well defined. But we know that they are used, and refer to an owl class. I.e., a concept can have a synonym, but a concept should not be a synonym.</odo:ECSO_01000004>
<rdfs:seeAlso>has_Related_Synonym</rdfs:seeAlso>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.dataone.org/odo/ECSO_00000318 -->
<owl:ObjectProperty rdf:about="&odo;ECSO_00000318">
<rdfs:label>has State</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436
</odo:ECSO_01000003>
<skos:definition>Describes the physical state of a substance</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436
</odo:ECSO_01000001>
</owl:ObjectProperty>
<!-- http://purl.dataone.org/odo/ECSO_00000319 -->
<owl:ObjectProperty rdf:about="&odo;ECSO_00000319">
<rdfs:label>has Location</rdfs:label>
<skos:definition>Defines where a class exists or takes place</skos:definition>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:ObjectProperty>
<!-- http://purl.dataone.org/odo/ECSO_00000333 -->
<owl:ObjectProperty rdf:about="&odo;ECSO_00000333">
<rdfs:label>has Result</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.dataone.org/odo/ECSO_00000339 -->
<owl:ObjectProperty rdf:about="&odo;ECSO_00000339">
<rdfs:label>has Input</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.dataone.org/odo/ECSO_00000340 -->
<owl:ObjectProperty rdf:about="&odo;ECSO_00000340">
<rdfs:label>has Output</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ENVO_01001309 -->
<owl:ObjectProperty rdf:about="&obo;ENVO_01001309"/>
<!-- http://purl.obolibrary.org/obo/RO_0000086 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000086"/>
<!-- http://purl.obolibrary.org/obo/RO_0001000 -->
<owl:ObjectProperty rdf:about="&obo;RO_0001000"/>
<!-- http://www.w3.org/TR/skos-reference/skos-owl1-dl#related -->
<owl:ObjectProperty rdf:about="&skosdl;related"/>
<!-- http://www.w3.org/TR/skos-reference/skos-owl1-dl#relatedMatch -->
<owl:ObjectProperty rdf:about="&skosdl;relatedMatch"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/2004/02/skos/core#altLabel -->
<owl:DatatypeProperty rdf:about="&skos;altLabel"/>
<!-- http://www.w3.org/2004/02/skos/core#definition -->
<owl:DatatypeProperty rdf:about="&skos;definition"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://ecoinformatics.org/oboe/oboe.1.1/oboe-core.owl#Characteristic -->
<rdf:Description rdf:about="&oboe-core;Characteristic">
<owl:equivalentClass rdf:resource="&obo;PATO_0000001"/>
</rdf:Description>
<!-- http://purl.dataone.org/odo/ECSO_00000010 -->
<owl:Class rdf:about="&odo;ECSO_00000010">
<rdfs:label>Carbon Cycle Component</rdfs:label>
<odo:ECSO_01000003>"carbon cycle." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/carbon+cycle</odo:ECSO_01000003>
<skos:definition>The parts that make up the combined processes that cycle carbon, (including photosynthesis, decomposition, and respiration) between its major reservoirs (the atmosphere, oceans, and living organisms).</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000011 -->
<owl:Class rdf:about="&odo;ECSO_00000011">
<rdfs:label>Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000514"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000004>Carbon fluxes are the movement of Carbon from one place (Source) to another (Sink). Carbon fluxes all have dimensions of {mass or amount of} Carbon per area (or volume) per time
biochemically-oriented projects use moles (e.g., for Stoichiometry) rather than kg to quantify the amount of Carbon, whereas Climate-oriented projects use kg</odo:ECSO_01000004>
<odo:ECSO_01000003>Litton, C.M. et al. Carbon allocation in forest ecosystems. Global Change Biology. V 13 I 10. pp. 2089 - 2109. July 2007.</odo:ECSO_01000003>
<odo:ECSO_01000005>unknown.</odo:ECSO_01000005>
<skos:definition>The rate at which a mass of carbon moves to or from a particular component of the ecosystem per unit time.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000012 -->
<owl:Class rdf:about="&odo;ECSO_00000012">
<rdfs:label>Dissolved Organic Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000035"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000003>Wangersky, P.J. Dissolved organic carbon methods: a critical review. Marine Chemistry. V 41 I 1-3. pp. 61-74. 1993.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000006>DOC flux</odo:ECSO_01000006>
<skos:definition>The rate at which a mass of dissolved organic carbon moves to or from a particular component of an ecosystem per unit time. Dissolved organic cabon is defined as the fraction of organic matter which is neither excluded nor adsorbed by the filter used to remove particulate organic carbon, and which is not volatile enough to be lost by the acidification and purging technique used to remove inorganic carbon.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000013 -->
<owl:Class rdf:about="&odo;ECSO_00000013">
<rdfs:label>Fire Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000323"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000328"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Johnson, E.A. and Miyanishi, K. Forest Fires: Behavior and Ecological Effects. Academic Press. 2001</odo:ECSO_01000003>
<skos:definition>The mass of carbon released from burning vegetation per unit time.</skos:definition>
<odo:ECSO_01000004>Fire Carbon Flux is a measure of carbon released into the atmosphere due to fire (MPS, 2015)</odo:ECSO_01000004>
<skos:altLabel>Fire Emissions</skos:altLabel>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000014 -->
<owl:Class rdf:about="&odo;ECSO_00000014">
<rdfs:label>Net Ecosystem Exchange Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000006>NEE</odo:ECSO_01000006>
<skos:altLabel>Net Ecosystem Exchange</skos:altLabel>
<odo:ECSO_01000003>Hayes, D.J. et al. Reconciling estimates of the contemporary North American carbon balance among terrestrial biosphere models, atmospheric inversions, and a new approach for estimating net ecosystem exchange from inventory-based data. Global Change Biology. V 8, i 4. pp. 1282-1299. April 2012. DOI: 10.1111/j.1365-2486.2011.02627.x</odo:ECSO_01000003>
<skos:altLabel>NEE</skos:altLabel>
<skos:definition>The magnitude of carbon sources and sinks is defined as the vertical exchange of CO2 between the surface (land or ocean) and the atmosphere.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000015 -->
<owl:Class rdf:about="&odo;ECSO_00000015">
<rdfs:label>Primary Production Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000339"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000323"/>
<rdf:Description rdf:about="&odo;ECSO_00000337"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000340"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000327"/>
<rdf:Description rdf:about="&obo;CHEBI_33582"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The process of carbon fixation by autotrophic carbon-fixing tissues per unit ground or water area and time.</skos:definition>
<rdfs:comment>http-en.wikipedia.org/wiki/Primary_production
Gross primary production (GPP) is the _amount_ of chemical energy as biomass that primary producers create in a given length of time. (GPP is sometimes confused with Gross Primary productivity, which is the _rate_ at which photosynthesis or chemosynthesis occurs.)
For most purposes (including this one) the two can be the same. It's most practical to measure production over a given time interval and area (or volume), and that amounts to an areal (or volumetric) rate.</rdfs:comment>
<odo:ECSO_01000003>Inferred from: Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>Primary productivity</skos:altLabel>
<skos:altLabel>Primary production</skos:altLabel>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000016 -->
<owl:Class rdf:about="&odo;ECSO_00000016">
<rdfs:label>Respiration Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000340"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000323"/>
<rdf:Description rdf:about="&obo;CHEBI_33582"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000339"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000327"/>
<rdf:Description rdf:about="&odo;ECSO_00000329"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<skos:altLabel>Total Respiration</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:definition>CO2 produced by organisms and emitted to the environment per unit ground or water area and time.</skos:definition>
<skos:definition>CO2 produced by organisms and emitted to the environment per unit ground or water area and time. Equivalent to the sum of autotrophic and heterotrophic respiration.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000017 -->
<owl:Class rdf:about="&odo;ECSO_00000017">
<rdfs:label>Autotrophic Respiration Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000016"/>
<owl:disjointWith rdf:resource="&odo;ECSO_00000018"/>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:definition>The sum of respiration (CO2 production) by all living parts of primary producers per unit ground or water area and time.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Autotrophic Respiration</skos:altLabel>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000018 -->
<owl:Class rdf:about="&odo;ECSO_00000018">
<rdfs:label>Heterotrophic Respiration Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000016"/>
<skos:definition>The respiration rate of heterotrophic organisms (animals and microbes) summed per unit ground or water area and time.</skos:definition>
<skos:altLabel>Heterotrophic Respiration</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000020 -->
<owl:Class rdf:about="&odo;ECSO_00000020">
<rdfs:label>Gross Primary Production Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000015"/>
<owl:disjointWith rdf:resource="&odo;ECSO_00000021"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>GPP</skos:altLabel>
<skos:definition>The sum of gross carbon fixation by autotrophic carbon-fixing tissues per unit ground or water area and time.</skos:definition>
<skos:altLabel>Gross Primary Production</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>Gross Primary Productivity</skos:altLabel>
<rdfs:comment>primary production before the autotrphs' own respiration is subtracted.
also called photosynthetic rate, or carbon fixation rate.
Synonyms: GPP</rdfs:comment>
<rdfs:comment>Primary production before the autotrophs' own respiration is subtracted.
Also called photosynthetic rate, or carbon fixation rate.</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000021 -->
<owl:Class rdf:about="&odo;ECSO_00000021">
<rdfs:label>Net Primary Production Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000015"/>
<rdfs:comment>the amount of primary production available for export (ie, gross, minus losses, like the autotrophs' own respiration, or other loss (exudation) not used by the carbon-fixing organism itself)
= gross primary production - autotrophic respiration
synonyms: NPP</rdfs:comment>
<skos:definition>Gross primary production (GPP) minus autotrophic respiration (AR) per unit ground or water area and time.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Net Primary Productivity</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>NPP</skos:altLabel>
<skos:altLabel>Net Primary Production</skos:altLabel>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000025 -->
<owl:Class rdf:about="&odo;ECSO_00000025">
<rdfs:label>Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<skos:altLabel>Name of Each Carbon Pool</skos:altLabel>
<odo:ECSO_01000005>O'Brien, pers comm. 2015-02-20</odo:ECSO_01000005>
<skos:definition>Carbon Pools are amounts of carbon in the system. dimensions are mass Carbon per area (eg, kg per m2
(can these be moles?)
{contributor, citation unkknown}</skos:definition>
<odo:ECSO_01000004>Carbon Pools are reservoirs in the system with the capacity to exchange. Usually scientists are interested in the size of carbon pools, and the movement of carbon between pools. Carbon pools can vary widely in scale, from an ecosystem to an species functional level. The dimensions are likely to be mass or moles Carbon per area (eg, kg per m2).</odo:ECSO_01000004>
<skos:definition>A reservoir with the capacity to store and release carbon, such as soil, terrestrial vegetation, the ocean, and the atmosphere {contributed by margaret, from</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>"carbon pool." McGraw-Hill Dictionary of Scientific & Technical Terms, 6E. 2003. The McGraw-Hill Companies, Inc. 20 Feb. 2015 http-encyclopedia2.thefreedictionary.com/carbon+pool</odo:ECSO_01000003>
<odo:ECSO_01000004>Carbon Pools are reservoirs in the system with the capacity to exchange carbon. Usually scientists are interested in the size of pools, and the movement of carbon between pools. The dimensions of a carbon pool are likely to be mass or moles Carbon per area or volume (eg, kg per m2).</odo:ECSO_01000004>
<rdfs:comment>Carbon Pools are amounts of carbon in the system. diimensions are mass Carbon per area (eg, kg per m2
(can these be moles?)</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000027 -->
<owl:Class rdf:about="&odo;ECSO_00000027">
<rdfs:label>Soil Carbon Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000341"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000319"/>
<owl:allValuesFrom rdf:resource="&obo;ENVO_00001998"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000331"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000319"/>
<owl:allValuesFrom rdf:resource="&obo;ENVO_00001998"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000331"/>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000341"/>
<skos:definition>The mass of carbon contained within the top layer of the earth's surface in which plants can grow, consisting of rock and mineral particles mixed with decaying organic matter and having the capability of retaining water.</skos:definition>
<odo:ECSO_01000003>"soil." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/soil</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Total Soil Carbon</skos:altLabel>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000028 -->
<owl:Class rdf:about="&odo;ECSO_00000028">
<rdfs:label>Plankton Carbon Pool
</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000343"/>
<skos:definition>The mass of carbon contained in free-floating organisms of the sea and fresh water that for the most part move passively with the water currents and consist mostly of microorganisms and small plants and animals.</skos:definition>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000030 -->
<owl:Class rdf:about="&odo;ECSO_00000030">
<rdfs:label>Leaf Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000343"/>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<odo:ECSO_01000008>leaves</odo:ECSO_01000008>
<rdfs:comment>'leaf carbon pool' and 'leaf litter carbon pool' also had associated with them the concepts 'leaves' and 'leaf decomposition' as related terms. These latter two concepts have been removed at this time as too general (leaves) or too processual (leaf decomposition as opposed to 'leaf decompositional pool'). Might consider adding these back in as skos:alLabel.</rdfs:comment>
<skos:definition>The mass of carbon contained within flattened photosynthetic structures emerging laterally from a main axis or stem and possessing true vascular tissue.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000031 -->
<owl:Class rdf:about="&odo;ECSO_00000031">
<rdfs:label>Benthic Algae Carbon Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000343"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000319"/>
<owl:allValuesFrom rdf:resource="&obo;ENVO_01000321"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000343"/>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<skos:definition>The mass of carbon present in algae on the seafloor.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000032 -->
<owl:Class rdf:about="&odo;ECSO_00000032">
<rdfs:label>Grass Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000343"/>
<odo:ECSO_01000003>"grass." Collins English Dictionary – Complete and Unabridged. 1991, 1994, 1998, 2000, 2003. HarperCollins Publishers 24 Feb. 2015 http-www.thefreedictionary.com/grass</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The mass of carbon contained within monocotyledonous plants of the family Poaceae, having jointed stems sheathed by long, narrow leaves, flowers in spikes, and seedlike fruits.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000033 -->
<owl:Class rdf:about="&odo;ECSO_00000033">
<rdfs:label>Wood Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000343"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>"wood." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/wood</odo:ECSO_01000003>
<skos:definition>The mass of carbon contained in the tough, fibrous substance lying beneath the bark of trees and shrubs, consisting of the vascular tissue known as xylem and composed chiefly of cellulose and lignin.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000034 -->
<owl:Class rdf:about="&odo;ECSO_00000034">
<rdfs:label>Leaf Litter Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000206"/>
<skos:definition>The mass of carbon contained in the partly decomposed remains of plants on the surface and in the upper layers of the soil.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000008>leaves</odo:ECSO_01000008>
<rdfs:comment>synonyms from LTER searched terms (mob, 2015-03-24)</rdfs:comment>
<odo:ECSO_01000008>leaf decomposition</odo:ECSO_01000008>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000035 -->
<owl:Class rdf:about="&odo;ECSO_00000035">
<rdfs:label>Dissolved Organic Carbon Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000331"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000318"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000321"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000331"/>
<odo:ECSO_01000003>TO DO, Margaret</odo:ECSO_01000003>
<skos:definition>TO DO, Margaret</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000037 -->
<owl:Class rdf:about="&odo;ECSO_00000037">
<rdfs:label>Annual Net Primary Productivity Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000021"/>
<skos:altLabel>ANPP</skos:altLabel>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>Annual Net Primary Productivity</skos:altLabel>
<skos:altLabel>Annual Net Primary Production</skos:altLabel>
<skos:definition>Gross primary production (GPP) minus autotrophic respiration (AR) over one year.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000043 -->
<owl:Class rdf:about="&odo;ECSO_00000043">
<rdfs:label>Total_Living_Biomass_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total carbon content of the living biomass (leaves+roots+wood)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000044 -->
<owl:Class rdf:about="&odo;ECSO_00000044">
<rdfs:label>Net_Longwave_Radiation_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Incident longwave radiation minus simulated outgoing longwave radiation (positive into grnd)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000045 -->
<owl:Class rdf:about="&odo;ECSO_00000045">
<rdfs:label>Total_Soil_Wetness_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Vertically integrated soil moisture divided by maximum allowable soil moisture above wilting point</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000046 -->
<owl:Class rdf:about="&odo;ECSO_00000046">
<rdfs:label>Near_Surface_CO2_Concentration_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<rdfs:comment>EquivalentTo: concentration and measurementFor only ofEntity only partOf only Air</rdfs:comment>
<skos:definition>Near surface dry air CO2 mole fraction</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000047 -->
<owl:Class rdf:about="&odo;ECSO_00000047">
<rdfs:label>Total_Respiration_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000016"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total respiration (TotalResp=AutoResp+heteroResp, always positive)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000048 -->
<owl:Class rdf:about="&odo;ECSO_00000048">
<rdfs:label>Absorbed_Fraction_Incoming_PAR_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Absorbed fraction incoming photosyntetically active radiation</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000049 -->
<owl:Class rdf:about="&odo;ECSO_00000049">
<rdfs:label>Near_Surface_Air_Temperature_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Near surface air temperature</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000050 -->
<owl:Class rdf:about="&odo;ECSO_00000050">
<rdfs:label>Leaf_Area_Index_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Area of leaves per area ground</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000051 -->
<owl:Class rdf:about="&odo;ECSO_00000051">
<rdfs:label>Surface_Pressure_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Surface pressure</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000052 -->
<owl:Class rdf:about="&odo;ECSO_00000052">
<rdfs:label>Average_Layer_Soil_Moisture_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Soil water content in each soil layer, including liquid, vapor and ice</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000053 -->
<owl:Class rdf:about="&odo;ECSO_00000053">
<rdfs:label>Average_Layer_Soil_Temperature_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Average soil temperature in each soil layer</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000054 -->
<owl:Class rdf:about="&odo;ECSO_00000054">
<rdfs:label>Surface_Runoff_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Runoff from the landsurface and/or subsurface stormflow</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000055 -->
<owl:Class rdf:about="&odo;ECSO_00000055">
<rdfs:label>Soil_Layer_Top_Depth_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Depth from soil surface to top of soil layer</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000056 -->
<owl:Class rdf:about="&odo;ECSO_00000056">
<rdfs:label>Near_Surface_Module_Of_The_Wind_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Near surface wind magnitude</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000057 -->
<owl:Class rdf:about="&odo;ECSO_00000057">
<rdfs:label>Size_Of_Each_Carbon_Pool_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total size of each carbon pool vertically integrated over the entire soil column</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000058 -->
<owl:Class rdf:about="&odo;ECSO_00000058">
<rdfs:label>Soil_Layer_Node_Depth_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Depth from soil surface to layer prognostic variables; typically center of soil layer</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000059 -->
<owl:Class rdf:about="&odo;ECSO_00000059">
<rdfs:label>Snow_Water_Equivalent_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Total water mass of snow pack, including ice and liquid water</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000060 -->
<owl:Class rdf:about="&odo;ECSO_00000060">
<rdfs:label>Total_Soil_Carbon_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Total soil and litter carbon content vertically integrated over the enire soil column</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000061 -->
<owl:Class rdf:about="&odo;ECSO_00000061">
<rdfs:label>Autotrophic_Respiration_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000017"/>
<skos:definition>Autotrophic respiration rate (always positive)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000062 -->
<owl:Class rdf:about="&odo;ECSO_00000062">
<rdfs:label>Rainfall_Rate_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Rainfall rate</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000063 -->
<owl:Class rdf:about="&odo;ECSO_00000063">
<rdfs:label>Longwave_Albedo_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Longwave Albedo</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000064 -->
<owl:Class rdf:about="&odo;ECSO_00000064">
<rdfs:label>Gross_Primary_Productivity_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>MsTMIP Output: Rate of photosynthesis (always positive)</skos:definition>
<odo:ECSO_01000001>mob</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000065 -->
<owl:Class rdf:about="&odo;ECSO_00000065">
<rdfs:label>Name_Of_Each_Carbon_Pool_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Name of each carbon pool (i.e., "wood," or "Coarse Woody Debris")</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000066 -->
<owl:Class rdf:about="&odo;ECSO_00000066">
<rdfs:label>Soil_Layer_Bottom_Depth_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Depth from soil surface to bottom of soil layer</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000067 -->
<owl:Class rdf:about="&odo;ECSO_00000067">
<rdfs:label>Heterotrophic_Respiration_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000018"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Heterotrophic respiration rate (always positive)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000068 -->
<owl:Class rdf:about="&odo;ECSO_00000068">
<rdfs:label>Active_Layer_Thickness_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Thaw depth; depth to zero centigrade isotherm in permafrost</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000069 -->
<owl:Class rdf:about="&odo;ECSO_00000069">
<rdfs:label>Net_Shortwave_Radiation_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Incident shortwave radiation minus simulated outgoing shortwave radiation (positive into grnd)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000070 -->
<owl:Class rdf:about="&odo;ECSO_00000070">
<rdfs:label>Total_Snow_Depth_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Total snow depth</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000071 -->
<owl:Class rdf:about="&odo;ECSO_00000071">
<rdfs:label>Fire_Emissions_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Flux of carbon due to fires (always positive)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000072 -->
<owl:Class rdf:about="&odo;ECSO_00000072">
<rdfs:label>Surface_Incident_Longwave_Radiation_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Surface incident longwave radiation</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000073 -->
<owl:Class rdf:about="&odo;ECSO_00000073">
<rdfs:label>Above_Ground_Woody_Biomass_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total above ground wood biomass</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000074 -->
<owl:Class rdf:about="&odo;ECSO_00000074">
<rdfs:label>Subsurface_Runoff_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Gravity soil water drainage and/or soil water lateral flow</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000075 -->
<owl:Class rdf:about="&odo;ECSO_00000075">
<rdfs:label>Sensible_Heat_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Sensible heat flux into the boundary layer (positive into atmosphere)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000076 -->
<owl:Class rdf:about="&odo;ECSO_00000076">
<rdfs:label>Net_Ecosystem_Exchange_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Net Ecosystem Exchange (NEE=HeteroResp+AutoResp-GPP, positive into atmosphere)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000077 -->
<owl:Class rdf:about="&odo;ECSO_00000077">
<rdfs:label>Net_Primary_Productivity_MOV</rdfs:label>
<rdfs:label>Shortwave_Albedo_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000200"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Net Primary Productivity (NPP=GPP-AutoResp, positive into plants)</skos:definition>
<skos:definition>Shortwave albedo</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000078 -->
<owl:Class rdf:about="&odo;ECSO_00000078">
<rdfs:label>Surface_Incident_Shortwave_Radiation_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Surface incident shortwave radiation</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000079 -->
<owl:Class rdf:about="&odo;ECSO_00000079">
<rdfs:label>Total_Evaporation_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Sum of all evaporation sources (positive into atmosphere)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000080 -->
<owl:Class rdf:about="&odo;ECSO_00000080">
<rdfs:label>Latent_Heat_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Latent heat flux into the boundary layer (positive into atmosphere)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000082 -->
<owl:Class rdf:about="&odo;ECSO_00000082">
<rdfs:label>Field Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Protocol"/>
<skos:definition>strawman definition from margaret:
a Field_Method is a method for determining a component of primary production that involves observations or measurements of the real world. A field method may have steps which could be considered 'modeling' (such as development of an allometric model of tree growth based on height), but measurements "in the field" (eg, of trees) are always involved. compare to Modeled_Method.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000083 -->
<owl:Class rdf:about="&odo;ECSO_00000083">
<rdfs:label>Modeled Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Protocol"/>
<skos:definition>strawman definition from Margaret
a Modeled_Method (is Simulated_Method better?) uses only data obtained from some source. It does not directly measure any real phenomenon.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000090 -->
<owl:Class rdf:about="&odo;ECSO_00000090">
<rdfs:label>Peak Biomass Harvest Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<odo:ECSO_01000005>Fahey and Knapp, 2007, p33</odo:ECSO_01000005>
<skos:definition>Peak_Biomass_Harvest_Method is an estimate of above ground NPP based on the above ground biomass harvested once, usually near the end of the growing season, at or just after the time of peak biomass</skos:definition>
<odo:ECSO_01000003>Fahey and Knapp, 2007, p33</odo:ECSO_01000003>
<odo:ECSO_01000004>The "Peak Standing Biomass Harvest" method is recommended for grasslands that meet the following criteria:
1) there is little carryover of living biomass from previous years due to distinct dormant season or fire during the dormant season or the previous year's biomass can be easily recognized and separated from the current year's biomass (living and dead)
2) the growing season is sufficiently short or plant material is of such low quality that decomposition of biomass produced can be ignored
3) consumption of plants by herbivores is minimal (i.e., large grazers are absent and small vertebrates and invertebrates can be ignored).</odo:ECSO_01000004>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000091 -->
<owl:Class rdf:about="&odo;ECSO_00000091">
<rdfs:label>Eddy Covariance Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<skos:definition>The eddy covariance method is an atmospheric measurement technique to measure and calculate vertical turbulent fluxes within atmospheric boundary layers, and analyzes high-frequency wind and scalar atmospheric data series, to yield exchange rates (fluxes) of trace gasses.</skos:definition>
<odo:ECSO_01000003>http-en.wikipedia.org/wiki/Eddy_covariance</odo:ECSO_01000003>
<odo:ECSO_01000004>It is frequently used to estimate momentum, heat, water vapor, carbon dioxide and methane fluxes. The technique is mathematically complex, and requires significant care in setting up and processing data. To date, there is no uniform terminology or a single methodology for the Eddy Covariance technique.
The technique has additionally proven applicable under water to the benthic zone for measuring oxygen fluxes between seafloor and overlying water.[6] In these environments, the technique is generally known as the eddy correlation technique, or just eddy correlation.
For CO2.... tbd</odo:ECSO_01000004>
<rdfs:comment>add these synonyms (near? exact?): also known as eddy correlation and eddy flux</rdfs:comment>
<odo:ECSO_01000005>http-en.wikipedia.org/wiki/Eddy_covariance</odo:ECSO_01000005>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000092 -->
<owl:Class rdf:about="&odo;ECSO_00000092">
<rdfs:label>Carbon14 Uptake Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<odo:ECSO_01000005>O'Brien, pers comm 2015-02-15
Fahey and Knapp, 2007</odo:ECSO_01000005>
<odo:ECSO_01000004>A C14 uptake method is typically used in aquatic environments, for microscopic autotrophs (phytoplankton). C14 is a radioactive tracer added as bicarbonate, and its concentration determined in the plankton after removed by filtration. Measurement scales tend to be small (hours and liters) relative to the scales of other field methods. Photosynthetic and heterotrophic activity are tightly coupled in planktonic systems (Fahey and Knapp, 2007). If the incubation is short enough, the result will be GPP (gross), because presumably, no labeled c14 was recycled (or respired) by the cells.
Sometimes researchers conduct "light-dark bottle", but the dark bottle tells you something different than in o2 light-dark. It gives you dark CO2 uptake, so subtract this from light CO2 uptake if you want autotrophic GPP.</odo:ECSO_01000004>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000093 -->
<owl:Class rdf:about="&odo;ECSO_00000093">
<rdfs:label>Oxygen Evolution LightDark Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<skos:definition>The stoichiometry of phtotsynthesis is well known. So you can measure O2 evolution, and back calculate to CO2 use.
usually, there is a "iight bottle" and "dark bottle". O2 evolution in the Light bottle is the net result, or sum, of all processes (GPP, Autotrophic resp, and probably some heterotrophic respiration too, because heterotrophs are hard to exclude). So Light bottle = NPP.
Dark bottle is respiration, probably total, eg, autotrophs + heterotrophs.
So light + dark = GPP (or about as close as you can get with a field measurement, and assume that heterotrophs aren't respiring much.)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000094 -->
<owl:Class rdf:about="&odo;ECSO_00000094">
<rdfs:label>Allometric Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<skos:definition>A method determining the relationship between a physical or physiological property of an organism relative to the size of the organism.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000004>an allometric method is usually accomplished with a combination of measurements that are tailored to the organism, e.g, size, growth rate, carbon content, plus some loss terms. SBC's dataset 21 has a good example of an allometric method for kelp.</odo:ECSO_01000004>
<odo:ECSO_01000003>O'Brien, pers comm, 2014-10-15</odo:ECSO_01000003>
<odo:ECSO_01000003>Begon, M., Harper, J.L., Townsend, C.R. Ecology: Individuals, Populations, and Communities. Third Edition. Blackwell Science. 1996.</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000095 -->
<owl:Class rdf:about="&odo;ECSO_00000095">
<rdfs:label>LIDAR Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<odo:ECSO_01000003>Available from: https-www.researchgate.net/publication/233137060_Use_of_ground_and_LiDAR_data_to_model_the_NPP_of_a_Mediterranean_pine_forest [accessed Mar 25, 2015].</odo:ECSO_01000003>
<skos:definition>A LIDAR_Method for NPP is a methodology to predict the net primary production (NPP) from ground and LiDAR data</skos:definition>
<skos:altLabel>LIDAR</skos:altLabel>
<odo:ECSO_01000001>mob, 2015-03-25</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000096 -->
<owl:Class rdf:about="&odo;ECSO_00000096">
<rdfs:label>MsTMIP_Simulation</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000083"/>
<odo:ECSO_01000003>adapted from wikipedia, Simulation</odo:ECSO_01000003>
<skos:definition>Simulation is the imitation of the operation of a real-world process or system over time. (wikipedia). A MsTMIP Simulation is a simulation carried out by the MsTMIP project (margaret)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000097 -->
<owl:Class rdf:about="&odo;ECSO_00000097">
<rdfs:label>BIOME-BGC_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>Biome-BGC is an ecosystem process model that estimates storage and flux of carbon, nitrogen and water. Biome-BGC is a computer program that estimates fluxes and storage of energy, water, carbon, and nitrogen for the vegetation and soil components of terrestrial ecosystems.
We call it a process model because its algorithms represent physical and biological processes that control fluxes of energy and mass.
The model uses a daily time-step. This means that each flux is estimated for a one-day period. Between days, the program updates its memory of the mass stored in different components of the vegetation, litter, and soil.
Weather is the most important control on vegetation processes. Flux estimates in Biome-BGC depend strongly on daily weather conditions. Model behavior over time depends on the history of these weather conditions, the climate.</odo:ECSO_01000004>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Weile Wang (weile.wang@gmail.com) citations: 1. thornton et al. (2002) modeling and measuring the effects of disburbance history and climate on carbon and water budgets in evergreen needleleaf forests. agriculture and forest meteorology, 113, 185-222.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000005>http-www.ntsg.umt.edu/project/biome-bgc</odo:ECSO_01000005>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000098 -->
<owl:Class rdf:about="&odo;ECSO_00000098">
<rdfs:label>CLASS-CTEMNplus_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>The Canadian Terrestrial Ecosystem Model (CTEM) is designed to serve as the terrestrial carbon cycle component in the coupled Canadian Centre for Climate Modelling and Analysis (CCCma) atmosphere-ocean general circulation model (GCM). CTEM is a dynamic vegetation model that is able to grow vegetation from bare ground and provides time-varying vegetation structural attributes (e.g., leaf area index (LAI), vegetation height, rooting depth and distribution, and canopy mass) to the land surface scheme it is coupled with. Other than simulating vegetation biomass and its structural attributes CTEM also simulates amount of carbon in its dead pools (litter and soil organic matter), and thus is able to provide net fluxes of CO2 between the land and the atmosphere.
This documentation provides a brief description of CTEM 1.0/1.1 and the manner in which CTEM is coupled to Canadian Land Surface Scheme (CLASS, version 2.7) [Verseghy et al. 1993; Verseghy, 1991]. Coupled CLASS 2.7/CTEM 1.0 are implemented in CCCma's coupled carbon climate model.</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000005>http-www.cccma.ec.gc.ca/ctem/</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Altaf Arain (arainm@mcmaster.ca) citations: 1. s. huang, m. a. arain, v. arora, f. yuan, j. brodeur, m. peichl, 2011. analysis of nitrogen controls on carbon and water exchanges in a conifer forest using the class-ctemn+ model, ecological modeling, 222(20–22): 3743–3760, http-dx.doi.org/10.1016/j.ecolmodel.2011.09.008.</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000099 -->
<owl:Class rdf:about="&odo;ECSO_00000099">
<rdfs:label>CLM4VIC_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000005>http-www.cesm.ucar.edu/working_groups/Land/Presentations/2012/huang.pdf</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Maoyi Huang (maoyi.huang@pnnl.gov) citations: 1. li, h., m. huang, m. s. wigmosta, et al. 2011, evaluating runoff simulations from the community land model 4.0 using observations from flux towers and a mountainous watershed, j. geophys. res., 116, d24120, doi:10.1029/2011jd016276.</odo:ECSO_01000003>
<odo:ECSO_01000004>Incorporating parameterizations from the Variable Infiltration
Capacity (VIC) land surface model into CLM.</odo:ECSO_01000004>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000100 -->
<owl:Class rdf:about="&odo;ECSO_00000100">
<rdfs:label>CLM_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000005>http-www.cesm.ucar.edu/models/ccsm4.0/clm/</odo:ECSO_01000005>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Daniel J. Hayes (hayesdj@ornl.gov) citations: 1. mao, jiafu, peter e. thornton, xiaoying shi, maosheng zhao, wilfred m. post, 2012: remote sensing evaluation of clm4 gpp for the period 2000–09. j. climate, 25, 5327–5342. doi: http-dx.doi.org/10.1175/jcli-d-11-00401.1 2. shi, x., mao j., thornton p. e., hoffman f. o. r. r. e. s. t. m., & post w. m. (2011). the impact of climate, co2, nitrogen deposition and land use change on simulated contemporary global river flow. geophysical research letters. 38(8). doi: 10.1029/2011gl046773 3. mao, jiafu; shi, xiaoying; thornton, peter e.; hoffman, forrest m.; zhu, zaichun; myneni, ranga b. 2013. "global latitudinal-asymmetric vegetation growth trends and their driving mechanisms: 1982–2009." remote sens. 5, no. 3: 1484-1497.</odo:ECSO_01000003>
<odo:ECSO_01000004>The Community Land Model version 4.0 (CLM4.0) is the land model used in the CCSM4.0. CLM4.0 is the latest in a series of land models developed through the CCSM project.</odo:ECSO_01000004>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000101 -->
<owl:Class rdf:about="&odo;ECSO_00000101">
<rdfs:label>DLEM_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000005>https-scisoc.confex.com/crops/2013am/webprogram/Paper78258.html</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Hanqin Tian (tianhan@auburn.edu) citations: 1. tian, h., x. xu, c. lu, m. liu, w. ren, g. chen, j. melillo, and j. liu (2011), net exchanges of co2, ch4, and n2o between china's terrestrial ecosystems and the atmosphere and their contributions to global climate warming, j. geophys. res., 116, g02011, doi:10.1029/2010jg001393. 2. tian, hq, g. chen, c. zhang, m. liu, g. sun, a. chappelka, w. ren, x. xu, c. lu, s. pan, h. chen, d. hui, s. mcnulty, g. lockaby and e. vance. 2012. century-scale response of ecosystem carbon storage to multifactorial global change in the southern united states. ecosystems 15(4): 674-694, doi: 10.1007/s10021-012-9539-x</odo:ECSO_01000003>
<odo:ECSO_01000004>The Dynamic Land Ecosystem Model (DLEM) represents the state-of-the-art in terrestrial ecosystem modeling, which couples biophysical, hydrological, major biogeochemical processes (C, N, and P cycling) including trace gases emissions such as CO2, N2O, CH4 , vegetation dynamics, disturbances including natural and anthropogenic aspects (e.g. land-use/land-cover change, intensive management on crops and forests, wild fire, insect and disease etc.) , and works at multiple scales in time from daily to yearly and space from meters to kilometers, from region to globe across Earth’s land surface and in adjacent ocean regions.</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000102 -->
<owl:Class rdf:about="&odo;ECSO_00000102">
<rdfs:label>GTEC_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>GTEC = Global Terrestrial Ecosystem Carbon Model
GTEC - global model contains 21,600 1 degree terrestrial cells. The carbon dynamics of each vegetated land cell (1.0 degree latitude X 1.0 degree longitude resolution) is described by a mechanistic soil-plant-atmosphere model (LoTEC) of ecosystem carbon storage and CO2 and H2O flux. Each grid cell is assigned to one of 15 ecosystem types and one of 105 soil types.</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-www.esd.ornl.gov/~wmp/GTEC/pgtec.html</odo:ECSO_01000003>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Daniel Ricciuto (ricciutodm@ornl.gov)</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000103 -->
<owl:Class rdf:about="&odo;ECSO_00000103">
<rdfs:label>ISAM_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000005>http-climate.atmos.uiuc.edu/isam2/descript.html</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Atul Jain (jain1@illinois.edu)</odo:ECSO_01000003>
<odo:ECSO_01000004>Integrated Assessment Modeling (IAM) is a new important research methodology for examining the complex interactions among physical, and human systems. Rather than actually using many of the multi-dimensional and complicated expert models, IAM build on the knowledge achieved by each individual scientific discipline. The uses of such tools need to explicitly recognize and address the existence of considerable uncertainty and scientific debate surrounding climate issues.
Our existing Integrated Science Assessment Model (ISAM) for assessment of climate change (Jain et al., 1994) consists of coupled modules for representation of the carbon cycle, effects of greenhouse gas emissions and aerosols on atmospheric composition, effects on global temperatures using an energy balance model, and processes affecting sea level change. This model has been used to estimate the relation between the time-dependent rate of greenhouse gas emissions and quantitative features of climate global temperature, the rate of temperature change, and sea level that are thought to be indicators of human impact on climate and ecosystems (Wigley et al., 1998). This model has also been applied to studies of Global Warming Potential (GWP, Wuebbles, et al., 1995), and the Economic-Damage Index (EDI, Hammitt et al., 1996) concepts.</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000104 -->
<owl:Class rdf:about="&odo;ECSO_00000104">
<rdfs:label>LPJ-wsl_Mstmip_Version1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>LPJ-wsl is a dynamic global vegetation model that simulates
coupled biogeography and biogeochemical responses to climate,
CO2, and disturbance (Sitch et al., 2003).</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Benjamin Poulter (benjamin.poulter@lsce.ipsl.fr)
Citations:
1. Sitch S, Smith B, Prentice IC, Arneth A, Bondeau A, Cramer W, Kaplan J, Levis S, Lucht, W, Sykes M, Thonicke K, Venevsky S 2003. Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ Dynamic Vegetation Model. Global Change Biology 9: 161–185.
2. Bondeau A, Smith PC, Zaehle S, Schaphoff S, Lucht W, Cramer W, Gerten D, Lotze-Campen H, Müller C, Reichstein M & Smith B (2007) Modelling the role of agriculture for the 20th century global terrestrial carbon balance. Gl Ch Biol 13:679-706,
3. Poulter, B, L Aragao, U Heyder, Gumpenberger, M, F Langerwisch, A Rammig, K Thonicke and W Cramer. 2010. Net biome production of the Amazon Basin in the 21st century. Global Change Biology, 16(7):2062-2075.
</odo:ECSO_01000003>
<odo:ECSO_01000005>http-digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1132&context=nasapub</odo:ECSO_01000005>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000105 -->
<owl:Class rdf:about="&odo;ECSO_00000105">
<rdfs:label>ORCHIDEE-LSCE_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>The ORCHIDEE dynamic global vegetation model represents the land surface features of the IPSL coupled atmosphere-ocean-vegetation model. ORCHIDEE has been developed using first order ecophysiological principles to represent both natural ecosystem and managed land carbon, water, and energy dynamics across multiple spatial (site to globe) and temporal (sub-daily to centennial) scales.
lsce = Laboratoire des Sciences du Climat et l'Environnement</odo:ECSO_01000004>
<odo:ECSO_01000005>http-unfccc.int/adaptation/nairobi_work_programme/knowledge_resources_and_publications/items/7382.php</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Shushi Peng (Shushi.Peng@lsce.ipsl.fr)
Gwena‰lle Berthier (Gwenaelle.Berthier@lsce.ipsl.fr) citations: 1. krinner, g., viovy, n., noblet-ducoudre, n. de, ogee, j., polcher, j., friedlingstein, p., ciais, p., sitch, s., and prentice, i. c (2005). a dynamic global vegetation model for studies of the coupled atmosphere-biosphere system. global biogeochem. cycles, 19, gb1015.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000106 -->
<owl:Class rdf:about="&odo;ECSO_00000106">
<rdfs:label>SIB3-JPL_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Nicholas C. Parazoo (nicholas.c.parazoo@jpl.nasa.gov) citations: 1. baker, i. t., l. prihodko, a. s. denning, m. goulden, s. miller, and h. r. da rocha (2008), seasonal drought stress in the amazon: reconciling models and observations, j. geophys. res., 113(g1), g00b01.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000004>The Simple Biosphere (SiB) Model was originally developed by Piers Sellers in the mid-1980’s as an internally-consistent module to surface-atmosphere exchanges of radiation, heat, moisture, and momentum over land.
It was extended in the mid-1990’s by a team of interdisciplinary scientists to include mechanistic linkages to photosynthesis, stomatal physiology, and satellite remote sensing.
Since that time it has been extended to include improved treatment of carbon cycling, soils, snow, hydrology, stable isotopes, phenology, and crops.</odo:ECSO_01000004>
<odo:ECSO_01000005>http-biocycle.atmos.colostate.edu/research/models/sib3/</odo:ECSO_01000005>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000107 -->
<owl:Class rdf:about="&odo;ECSO_00000107">
<rdfs:label>SIBCASA_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000005>http-biocycle.atmos.colostate.edu/Documents/SiB/Schaefer_2008_J._Geophys._Res.pdf</odo:ECSO_01000005>
<odo:ECSO_01000004>We combine the photosynthesis and biophysical
calculations in the Simple Biosphere model, Version 2.5 (SiB2.5) with the
biogeochemistry from the Carnegie-Ames-Stanford Approach (CASA) model to create
SiBCASA, a hybrid capable of estimating terrestrial carbon fluxes and biomass from diurnal
to decadal timescales.</odo:ECSO_01000004>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Kevin Schaefer (kevin.schaefer@nsidc.org) citations: 1. schaefer, k., g. j. collatz, p. tans, a. s. denning, i. baker, j. berry, l. prihodko, n. suits, and a. philpott (2008), combined simple biosphere/carnegie-ames-stanford approach terrestrial carbon cycle model, j. geophys. res., 113, g03034, doi:10.1029/2007jg000603. 2. schaefer, k., t. zhang, a. g. slater, l. lu, a. etringer, and i. baker (2009), improving simulated soil temperatures and soil freeze/thaw at high-latitude regions in the simple biosphere/carnegie-ames-stanford approach model, j. geophys. res., 114, f02021, doi:10.1029/2008jf001125.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000108 -->
<owl:Class rdf:about="&odo;ECSO_00000108">
<rdfs:label>TEM6_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000005>http-ecosystems.mbl.edu/TEM/</odo:ECSO_01000005>
<odo:ECSO_01000004>The Terrestrial Ecosystem Model (TEM) is a process-based ecosystem model that describes carbon, nitrogen and water dynamics of plants and soils for terrestrial ecosystems of the globe. The TEM uses spatially referenced information on climate, elevation, soils and vegetation as well as soil- and vegetation-specific parameters to make estimates of important carbon, nitrogen and water fluxes and pool sizes of terrestrial ecosystems. The TEM normally operates on a monthly time step and at a 0.5 degrees latitude/longitude spatial resolution, but the model has been applied at finer spatial resolutions (down to 1 hectare).</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Dan Hayes (hayesdj@ornl.gov) citations: 1. hayes, d.j., a.d. mcguire, d.w. kicklighter, k.r. gurney, t.j. burnside, and j.m. melillo (2011), is the northern high latitude land-based co2 sink weakening? global biogeochemical cycles, 25(3), gb3018, doi:10.1029/2010gb003813.</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000109 -->
<owl:Class rdf:about="&odo;ECSO_00000109">
<rdfs:label>TRIPLEX-GHG_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000004>TRIPLEX-GHG is a process-based model framework used to quantify terrestrial ecosystem greenhouse gas dynamics by incorporating both ecological drivers and biogeochemical processes.
TRIPLEX-GHG was developed from the Integrated Biosphere Simulator (IBIS), a dynamic global vegetation model, coupled with a new methane (CH4) biogeochemistry module (incorporating CH4 production, oxidation, and transportation processes) and a water table module to investigate CH4 emission processes that occur in natural wetlands.</odo:ECSO_01000004>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000005>http-www.researchgate.net/publication/260724890_Modelling_methane_emissions_from_natural_wetlands_TRIPLEX-GHG_model_integration_sensitivity_analysis_and_calibration</odo:ECSO_01000005>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Changhui Peng (peng.changhui@uqam.ca) citations: 1. peng, c.h., zhu, q.a and h. chen, 2011. integrating greenhouse gas emission processes into a dynamic global vegetation model: triplex-ghg model development and testing, in: procceding of isem 2011 conference, pp76 2. peng et al (2013), in preparation</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000110 -->
<owl:Class rdf:about="&odo;ECSO_00000110">
<rdfs:label>VEGAS2.1_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000004>The VEgetation-Global Atmosphere-Soil Model (VEGAS)</odo:ECSO_01000004>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Ning Zeng (zeng@atmos.umd.edu)</odo:ECSO_01000003>
<odo:ECSO_01000005>http-www.ldeo.columbia.edu/~biasutti/Workshop/ppts/Zeng.pdf</odo:ECSO_01000005>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000111 -->
<owl:Class rdf:about="&odo;ECSO_00000111">
<rdfs:label>VISIT_MstmipVersion1_Modeled_Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000096"/>
<odo:ECSO_01000003>http-nacp.ornl.gov/mstmipdata/
Contacts:
Akihiko Ito (z060507@gmail.com) citations: 1. ito, a. (2010), changing ecophysiological processes and carbon budget in east asian ecosystems under near-future changes in climate: implications for long-term monitoring from a process-based model, j.plant res., 123, 577-588, doi:10.1007/s10265-009-0305-x. 2. ito, a. (2008), the regional carbon budget of east asia simulated with a terrestrial ecosystem model and validated using asiaflux data, agricultural and forest meteorology, 148(5), 738-747, doi:10.1016/j.agrformet.2007.12.007.</odo:ECSO_01000003>
<odo:ECSO_01000004>VISIT:
Vegetation
Integrative
Simulator
for
Trace
gases
by
A.Ito
(NIES)

=>
ecophysiological,
biogeochemical
model:
cf.
Biomeâ€BGC,
Century
NIES = National Institute for Environmental Studies, Japan</odo:ECSO_01000004>
<odo:ECSO_01000005>http-www.fluxdata.org/DataInfo/AsilomarPresentations/090210_asilomar_aito.pdf</odo:ECSO_01000005>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000200 -->
<owl:Class rdf:about="&odo;ECSO_00000200">
<rdfs:label>Areal Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>A flux of carbon per unit area.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000201 -->
<owl:Class rdf:about="&odo;ECSO_00000201">
<rdfs:label>Carbon Dioxide Diffusion Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000323"/>
</owl:Restriction>
</rdfs:subClassOf>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The process by which carbon dioxide in the atmosphere moves across a phase boundary and into the ocean. This is a major sink of atmospheric carbon dioxide. Dissolved carbon dioxide subsequently reacts to form carbonic acid, bicarbonate ions, and carbonate ions, leading to ocean acidification.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000202 -->
<owl:Class rdf:about="&odo;ECSO_00000202">
<rdfs:label>Bicarbonate Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000341"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000326"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000341"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The pool of carbon oxoanions resulting from the removal of a proton from carbonic acid.</skos:definition>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_17544</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000203 -->
<owl:Class rdf:about="&odo;ECSO_00000203">
<rdfs:label>Carbon Dioxide Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000341"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000323"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000341"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000204 -->
<owl:Class rdf:about="&odo;ECSO_00000204">
<rdfs:label>Carbonate Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000341"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000325"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000341"/>
<odo:ECSO_01000003>The pool of carbon oxoanions that have formula CO3.
</odo:ECSO_01000003>
<odo:ECSO_01000003> http://purl.obolibrary.org/obo/CHEBI_41609
</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000205 -->
<owl:Class rdf:about="&odo;ECSO_00000205">
<rdfs:label>Methane Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000341"/>
<odo:ECSO_01000003> http://purl.obolibrary.org/obo/CHEBI_16183</odo:ECSO_01000003>
<skos:definition>A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC).
</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000206 -->
<owl:Class rdf:about="&odo;ECSO_00000206">
<rdfs:label>Fixed Carbon Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000331"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000327"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;RO_0001000"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000015"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000331"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000207 -->
<owl:Class rdf:about="&odo;ECSO_00000207">
<rdfs:label>Atmospheric Carbon Dioxide Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000203"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000318"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000315"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<skos:definition>Gas phase carbon dioxide molecules in the air surrounding Earth. A principle contributor to climate change and the main source of carbon used by photoautotrophs to store energy during primary production.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000208 -->
<owl:Class rdf:about="&odo;ECSO_00000208">
<rdfs:label>Dissolved Carbon Dioxide Pool</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000203"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000318"/>
<owl:allValuesFrom rdf:resource="&odo;ECSO_00000321"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>Carbon dioxide that has passed from the gas phase into the dissolved phase, with the the ocean begin the largest component of this pool. This process contributes to acidification by forming carbonic acid with water molecules.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000300 -->
<owl:Class rdf:about="&odo;ECSO_00000300">
<rdfs:label>CO2 Enrichment Method</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000082"/>
<skos:definition>A method of artificially raising the atmospheric CO2 concentration in field plots in order to study effects on the ecosystem.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000301 -->
<owl:Class rdf:about="&odo;ECSO_00000301">
<rdfs:label>Aboveground Net Primary Production Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000021"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&odo;ECSO_00000319"/>
<owl:allValuesFrom>
<owl:Class>
<owl:complementOf rdf:resource="&obo;ENVO_00001998"/>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000021"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>Gross primary productivity (GPP) minus autotrophic respiration (AR) in plant segments other than the roots, e.g. leaves and shoots.</skos:definition>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000305 -->
<owl:Class rdf:about="&odo;ECSO_00000305">
<rdfs:label>Single-Celled Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000312"/>
<owl:disjointWith rdf:resource="&odo;ECSO_00000306"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000306 -->
<owl:Class rdf:about="&odo;ECSO_00000306">
<rdfs:label>Multi-Celled Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000312"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000307 -->
<owl:Class rdf:about="&odo;ECSO_00000307">
<rdfs:label>Microbe</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000305"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000308 -->
<owl:Class rdf:about="&odo;ECSO_00000308">
<rdfs:label>Functional Level</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000010"/>
<skos:definition>Functional levels defined here:
http://www.physicalgeography.net/fundamentals/9d.html
maybe others.
</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien</odo:ECSO_01000001>
<rdfs:comment>This class and all subclasses should be incorporated into ENVO.</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000309 -->
<owl:Class rdf:about="&odo;ECSO_00000309">
<rdfs:label>Ecosystem</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000526"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
<skos:definition>Ecosystems are dynamic entities composed of the biological community and the abiotic environment.
</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000310 -->
<owl:Class rdf:about="&odo;ECSO_00000310">
<rdfs:label>Community</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000526"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>In ecology, a community is an assemblage of two or more populations of different species occupying the same geographical area. (wikipedia) An ecological unit composed of a group of organisms or a population of different species occupying a particular area, usually interacting with each other and their environment. (biology-online.org)</skos:definition>
<odo:ECSO_01000003>http://ecoinformatics.org/oboe/oboe.1.0/oboe-ecology.owl#EcologicalCommunity</odo:ECSO_01000003>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000311 -->
<owl:Class rdf:about="&odo;ECSO_00000311">
<rdfs:label>Population</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000526"/>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<skos:definition>A population comprises all the individuals of a given species in a specific area or region at a certain time.
</skos:definition>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000312 -->
<owl:Class rdf:about="&odo;ECSO_00000312">
<rdfs:label>Organism</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<skos:definition>An organism is a single indivual. do we really have any carbon cycle data for a single organism? maybe not.
no ref today.</skos:definition>
<odo:ECSO_01000001>Margaret O'brien</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000313 -->
<owl:Class rdf:about="&odo;ECSO_00000313">
<rdfs:label>Species</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000526"/>
<odo:ECSO_01000001>Margaret O'brien</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
<skos:definition>A group of interbreeding organisms that do not ordinarily breed with members of other groups.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000314 -->
<owl:Class rdf:about="&odo;ECSO_00000314">
<rdfs:label>Physical State</rdfs:label>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000315 -->
<owl:Class rdf:about="&odo;ECSO_00000315">
<rdfs:label>Gas</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000314"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000316 -->
<owl:Class rdf:about="&odo;ECSO_00000316">
<rdfs:label>Liquid</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000314"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000317 -->
<owl:Class rdf:about="&odo;ECSO_00000317">
<rdfs:label>Solid</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000314"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000320 -->
<owl:Class rdf:about="&odo;ECSO_00000320">
<rdfs:label>Dissolution Carbon Flux</rdfs:label>
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;RO_0000086"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000321"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The rate at which carbon dissolves, moving from one pool to another.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000321 -->
<owl:Class rdf:about="&odo;ECSO_00000321">
<rdfs:label>Dissolved</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000314"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000323 -->
<owl:Class rdf:about="&odo;ECSO_00000323">
<rdfs:label>Carbon Dioxide</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000337"/>
<skos:altLabel>CO2</skos:altLabel>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>CHEBI:16526</odo:ECSO_01000003>
<skos:definition>A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by organisms that depend directly or indirectly on living or decaying plants for food, and taken up during photosynthesis (adapted from ChEBI).
</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000324 -->
<owl:Class rdf:about="&odo;ECSO_00000324">
<rdfs:label>Methane</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000329"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000325 -->
<owl:Class rdf:about="&odo;ECSO_00000325">
<rdfs:label>Carbonate</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000337"/>
<skos:altLabel>CO3</skos:altLabel>
<odo:ECSO_01000003> http://purl.obolibrary.org/obo/CHEBI_41609
</odo:ECSO_01000003>
<skos:definition>Carbon oxoanions that have formula CO3.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000326 -->
<owl:Class rdf:about="&odo;ECSO_00000326">
<rdfs:label>Bicarbonate</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000337"/>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_17544</odo:ECSO_01000003>
<skos:altLabel>HCO3</skos:altLabel>
<skos:definition>Carbon oxoanions resulting from the removal of a proton from carbonic acid.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000327 -->
<owl:Class rdf:about="&odo;ECSO_00000327">
<rdfs:label>Carbohydrate</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000329"/>
<skos:definition>Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates.</skos:definition>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_16646</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000328 -->
<owl:Class rdf:about="&odo;ECSO_00000328">
<rdfs:label>Carbon Monoxide</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000337"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000329 -->
<owl:Class rdf:about="&odo;ECSO_00000329">
<rdfs:label>Organic Carbon</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;CHEBI_50860"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000331 -->
<owl:Class rdf:about="&odo;ECSO_00000331">
<rdfs:label>Organic Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000025"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000335 -->
<owl:Class rdf:about="&odo;ECSO_00000335">
<rdfs:label>Aboveground Woody Biomass Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000033"/>
<skos:definition>The total sum of the mass of carbon contained in the tough, fibrous substance lying beneath the bark of trees and shrubs, consisting of the vascular tissue known as xylem and composed chiefly of cellulose and lignin.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>"wood." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/wood</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000336 -->
<owl:Class rdf:about="&odo;ECSO_00000336">
<rdfs:label>Particulate Organic Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000331"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000337 -->
<owl:Class rdf:about="&odo;ECSO_00000337">
<rdfs:label>Inorganic Carbon</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;CHEBI_24835"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000341 -->
<owl:Class rdf:about="&odo;ECSO_00000341">
<rdfs:label>Inorganic Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000025"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000343 -->
<owl:Class rdf:about="&odo;ECSO_00000343">
<rdfs:label>Total Living Biomass Carbon Pool</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000206"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000501 -->
<owl:Class rdf:about="&odo;ECSO_00000501">
<rdfs:label>Tree</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000306"/>
<oboInOwl:id>ECSO_00000501</oboInOwl:id>
<skos:definition>In botany, a tree is a perennial plant with an elongated stem, or trunk, supporting branches and leaves in most species. Wikipedia</skos:definition>
<dc:contributor>Margaret O'Brien, orcid.org/0000-0002-1693-8322</dc:contributor>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000502 -->
<owl:Class rdf:about="&odo;ECSO_00000502">
<rdfs:label>Ground</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<odo:ECSO_01000003>http://dictionary.reference.com/browse/ground</odo:ECSO_01000003>
<skos:definition>The solid surface of the earth; firm or dry land.
</skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<rdfs:comment>ALso see, FAO, glossary of supporting terms:
http://www.fao.org/docrep/009/j9345e/j9345e12.htm
They also refer to sources, eg, IPCC, GL FRA.
We might need this term when for a flux measurement. as in the layer the flux happens across.
for some uses, though this term ("ground") is only meaningful if it is inclued as part of another concept of interest, eg above-ground or below-ground.
</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000503 -->
<owl:Class rdf:about="&odo;ECSO_00000503">
<rdfs:label>Plant material</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;ENVO_01000155"/>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>Plant Ontology, accession:
PO:0025161</odo:ECSO_01000003>
<skos:definition>A portion of organism substance that is or was part of a plant, the whole or part thereof. From Plant Ontology (PO:0025161)</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000504 -->
<owl:Class rdf:about="&odo;ECSO_00000504">
<rdfs:label>Phytoplankton</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;ENVO_01000155"/>
<odo:ECSO_01000003>https://en.wikipedia.org/wiki/Phytoplankton,
http://oceanservice.noaa.gov/facts/phyto.html</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition>The autotrophic components of the plankton community and a key factor of oceans, seas and freshwater basin ecosystems. Microscopic, but when present in high enough numbers, some varieties may be produce colored patches on the water surface. From Greek, 'phyto' = plant and 'planktos' = wanderer.
Adapted from oceanservice.noaa.gov/facts/phyto.html, https://en.wikipedia.org/wiki/Phytoplankton</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000505 -->
<owl:Class rdf:about="&odo;ECSO_00000505">
<rdfs:label>Experiment</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Protocol"/>
<skos:definition>A test under controlled conditions that is made to demonstrate a known truth, examine the validity of a hypothesis, or determine the efficacy of something previously untried. </skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://www.thefreedictionary.com/Scientific+experiment</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000506 -->
<owl:Class rdf:about="&odo;ECSO_00000506">
<rdfs:label>Manipulative experiment</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000505"/>
<skos:definition>Observation of an ecological system of interest under specific, controllable circumstances in an effort to evaluate system response. Fundamentally, manipulative or comarative experments (Hurlbert 1984) require 1) random allocation of treatments (ncluding controls) to experimental units from the population under study and 2) replication of each tratment over several experimental units (Fisher 1925).
</skos:definition>
<rdfs:comment>also see the below, from everything2.com
A manipulative experiment is one in which the experimenter manipulates the system of study in order to attempt to uncover causal relationships. Such experiments can either be rigidly or loosely controlled. In the former case, investigator may create an artificial system in a laboratory setting and control all confounding variables so as to eliminate ambiguity in the interpretation of results. In the latter case, the investigator may simply modify one or two variables of interest in order to determine how the natural system will respond. The statistical methods used to analyse the data are generally of the analysis of variance type, but there are exceptions (especially in the case of loosely controlled manipulations). Two examples follow, one where rigid control was exercised, and one where loose control was used. </rdfs:comment>
<odo:ECSO_01000003>http://everything2.com/title/Manipulative+experiment</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>Morrison, M. L., W.M. Block, M. D Strickland, B. A. Collier, M. J. Peterson. 2008 Wildlife Study Design. Springer Science & Business Media,
(via google books, sect 2.4.1, p 42)
and cited therein:
FIsher. R. A. 1925. Statistical Methods for Research Workers. Oliver and Boyd, London.
Hurlbert, S. H. 1984. Pseudoreplication and the design of ecolgical field experments. Ecol Monogr. 54:187-211
</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000507 -->
<owl:Class rdf:about="&odo;ECSO_00000507">
<rdfs:label>Natural experiment</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000505"/>
<skos:definition>A natural experiment is an empirical study in which individuals (or clusters of individuals) exposed to the experimental and control conditions are determined by nature or by other factors outside the control of the investigators, yet the process governing the exposures arguably resembles random assignment.</skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>https://en.wikipedia.org/wiki/Natural_experiment</odo:ECSO_01000003>
<rdfs:comment>Also could use:
Term loosely used to apply to the study of any naturally occurring differences among groups.
W. Paul Vogt, Dianne C. Gardner, Lynne M. Haeffele. 2012. When to Use What Research Design Guilford Press (p 62 via google books)</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000508 -->
<owl:Class rdf:about="&odo;ECSO_00000508">
<rdfs:label>Macroalgae</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000306"/>
<skos:definition>An operational term for photosynthetic, nonvascular plants that contain chlorophyll a nad have simple reproductive structures, and that are visible to the unaided eye. Includes some members of the red, brown, and green algae, taxonomic groups which do not have a common multicellular ancestor. Some tuft-forming cyanobacteria or diatoms are sometimes considered macroalgae.</skos:definition>
<odo:ECSO_01000003>Adapted from
https://en.wikipedia.org/wiki/Seaweed
and
Dawes, Cl J. 1978. Marine Botany, John Wiley and Sons., p 113</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000509 -->
<owl:Class rdf:about="&odo;ECSO_00000509">
<rdfs:label>diameter</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-characteristics;Length"/>
<odo:ECSO_01000003>PATO:0001334</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000510 -->
<owl:Class rdf:about="&odo;ECSO_00000510">
<rdfs:label>circumference</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-characteristics;Length"/>
<odo:ECSO_01000003>PATO:0001648</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000511 -->
<owl:Class rdf:about="&odo;ECSO_00000511">
<rdfs:label>height</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-characteristics;Length"/>
<odo:ECSO_01000003>www.thefreedictionary.com/height
ALso see PATO:0000119</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition>the measurement from base of something to top, or to a fixed point.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000512 -->
<owl:Class rdf:about="&odo;ECSO_00000512">
<rdfs:label>concentration_MeasurementType</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>See PATO:0000033, concentration of</skos:definition>
<rdfs:comment>EquivalentClass: Measurement and ofCharacteristic only (AmountOfSubstanceConcentration or MassDensity)</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000513 -->
<owl:Class rdf:about="&odo;ECSO_00000513">
<rdfs:label>biomass</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000514 -->
<owl:Class rdf:about="&odo;ECSO_00000514">
<rdfs:label>flux_MeasurementType</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000515 -->
<owl:Class rdf:about="&odo;ECSO_00000515">
<rdfs:label>depth</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-characteristics;Length"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000516 -->
<owl:Class rdf:about="&odo;ECSO_00000516">
<rdfs:label>'Soil heterotrophic respiration under manipulated conditions'</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000532"/>
<skos:definition>The respiration rate of heterotrophic organisms (animals and microbes) summed per unit area and time, occuring in soil, and during a experiment in which some condition has been manipulated or altered to understand its effect.</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>ECSO_00000011 (Carbon Flux), adapted for (a) CO2 and (b) a manipulated experiment</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000517 -->
<owl:Class rdf:about="&odo;ECSO_00000517">
<rdfs:label>moisture</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000512"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000518 -->
<owl:Class rdf:about="&odo;ECSO_00000518">
<rdfs:label>temperature_518</rdfs:label>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000524 -->
<owl:Class rdf:about="&odo;ECSO_00000524">
<rdfs:label>Earth</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
<odo:ECSO_01000003>Merriam-Webster:
http://www.merriam-webster.com/dictionary/earth</odo:ECSO_01000003>
<skos:definition>The planet on which which we live</skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000526 -->
<owl:Class rdf:about="&odo;ECSO_00000526">
<rdfs:label>group</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000527 -->
<owl:Class rdf:about="&odo;ECSO_00000527">
<rdfs:label>'ecosystem component entity'</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000528 -->
<owl:Class rdf:about="&odo;ECSO_00000528">
<rdfs:label>Near_Surface_Specific_Humidity_MOV</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Near surface specific humidity</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000530 -->
<owl:Class rdf:about="&odo;ECSO_00000530">
<rdfs:label>CO2 Concentration</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000512"/>
<rdfs:comment>EquivalentTo: concentration and measurementFor only Observation and ofEntity only CO2</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000531 -->
<owl:Class rdf:about="&odo;ECSO_00000531">
<rdfs:label>Total_Soil_Carbon</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000532 -->
<owl:Class rdf:about="&odo;ECSO_00000532">
<rdfs:label>Soil_Heterotrophic_Respiration_Carbon_Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000018"/>
<skos:definition>The respiration rate of heterotrophic organisms (animals and microbes) summed per unit area and time, and occuring in soil.</skos:definition>
<odo:ECSO_01000003>Adapted from ECSO_00000018, Heterotrophic Respiration Carbon Flux</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000533 -->
<owl:Class rdf:about="&odo;ECSO_00000533">
<rdfs:label>Grassland Above Ground NPP Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000301"/>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition>Gross primary productivity (GPP) minus autotrophic respiration (AR) in a GRASSLAND of plant segments other than the roots, e.g. leaves and shoots.
Often abbreviated to ANPP, and in grasslands, measured by peak biomass.</skos:definition>
<odo:ECSO_01000003>Adapted form ECSO_00000021 (Net Primary Production Carbon FLux) and ECSO_00000301 (Above Ground Net Primary Production Carbon Flux)</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000534 -->
<owl:Class rdf:about="&odo;ECSO_00000534">
<rdfs:label>Phytoplankton Primary Production Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000015"/>
<skos:definition>The process of carbon fixation by autotrophic phytoplankton per unit area or volume and time. May occur in aquatic environments of all types.</skos:definition>
<odo:ECSO_01000003>Adapted from
https://en.wikipedia.org/wiki/Primary_production</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<rdfs:comment>http-en.wikipedia.org/wiki/Primary_production
Gross primary production (GPP) is the _amount_ of chemical energy as biomass that primary producers create in a given length of time. (GPP is sometimes confused with Gross Primary productivity, which is the _rate_ at which photosynthesis or chemosynthesis occurs.)
For most purposes (including this one) the two can be the same. It's most practical to measure production over a given time interval and area (or volume), and that amounts to an areal (or volumetric) rate.</rdfs:comment>
<rdfs:comment>From Moigis and Gocke, 2003, 10.1093/plankt/fbg089
The primary production of phytoplankton has been estimated for decades by the 14C (Steemann-Nielsen, 1952) and O2 (Gaarder and Gran, 1927) methods. </rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000535 -->
<owl:Class rdf:about="&odo;ECSO_00000535">
<rdfs:label>Oceanic total inorganic carbon concentration</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000539"/>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<rdfs:comment>This might be a subclass of CO2 concentration (rather than it's sibling). Margaret needs to talk to her local CO2 system experts.
generally, CO2 that enters the ocean dissociates into bicarbonate, carbonate, (and some stays as CO2). but not sure what people in that domain call the total. (or if this is actually what they would search for! will confirm that, too, this week.</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000536 -->
<owl:Class rdf:about="&odo;ECSO_00000536">
<rdfs:label>CO2 Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000011"/>
<skos:definition>The rate at which a Carbon Dioxide (CO2) moves to or from a particular component of the ecosystem per unit time.</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>ECSO_00000011 (Carbon Flux), adapted for CO2</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000537 -->
<owl:Class rdf:about="&odo;ECSO_00000537">
<rdfs:label>CO2 flux under manipulated conditions</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000536"/>
<odo:ECSO_01000003>ECSO_00000011 (Carbon Flux), adapted for (a) CO2 and (b) a manipulated experiment</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition>The rate at which a Carbon Dioxide (CO2) moves to or from a particular component of the ecosystem per unit time, during a experiment in which some condition has been manipulated or altered to understand its effect.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000538 -->
<owl:Class rdf:about="&odo;ECSO_00000538">
<rdfs:label>Earth_terrestrial</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000524"/>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition> areas of land as distinguished from sea and air</skos:definition>
<odo:ECSO_01000003>Merriam-Webster:
http://www.merriam-webster.com/dictionary/earth
definition 3a</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000539 -->
<owl:Class rdf:about="&odo;ECSO_00000539">
<rdfs:label>Aquatic total inorganic carbon concentration</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000512"/>
<rdfs:comment>This class is an analog to "Oceanic total inorganic Carbon", for any aquatic environment.
The class for 'Oceanic ...' should be a subclass of this one.
This might be a subclass of CO2 concentration (rather than it's sibling). Margaret needs to talk to her local CO2 system experts.
generally, CO2 that enters water dissociates into bicarbonate, carbonate, (and some stays as CO2). but not sure what people in that domain call the total.</rdfs:comment>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000540 -->
<owl:Class rdf:about="&odo;ECSO_00000540">
<rdfs:label>Growth</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000546"/>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>adapted from:
http://www.bbc.co.uk/bitesize/higher/biology/control_regulation/growth/revision/1/
http://www.biology-online.org/dictionary/Growth
Google (no ref to src material)</odo:ECSO_01000003>
<skos:definition>The process of increasing in physical size, mass or number, gradually and irreversibly. the process of developing or maturing. the increase in number and spread of small or microscopic organisms.
potential synonyms: development, maturation, growing, germination, sprouting; blooming, expansion, extension, development, progress, advance, advancement
</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000541 -->
<owl:Class rdf:about="&odo;ECSO_00000541">
<rdfs:label>Tree Height</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000501"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresCharacteristic"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000511"/>
</owl:Restriction>
</rdfs:subClassOf>
<skos:definition>Height of a tree, by various methods.</skos:definition>
<odo:ECSO_01000003>https://en.wikipedia.org/wiki/Tree_height_measurement</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000542 -->
<owl:Class rdf:about="&odo;ECSO_00000542">
<rdfs:label>Marine Macroalgae NPP Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000021"/>
<odo:ECSO_01000003>adapted from ECSO_00000021 (Net Primary Production Carbon FLux)</odo:ECSO_01000003>
<skos:definition>Gross primary production (GPP) minus autotrophic respiration (AR) by marine macroalgae. Usually expressed per unit area (substrate or water surface) and time. Marine macroalgae occur in oceanic or estuarine environments.</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000543 -->
<owl:Class rdf:about="&odo;ECSO_00000543">
<rdfs:label>Oceanic CO2 Carbon Flux</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000200"/>
<odo:ECSO_01000003>ECSO_00000200, Areal Carbon Flux, adapted for the ocean.</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<skos:definition>A flux of carbon across the surface of the ocean, per unit area.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000544 -->
<owl:Class rdf:about="&odo;ECSO_00000544">
<rdfs:label>Tree Diameter</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresCharacteristic"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000509"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&oboe-core;measuresEntity"/>
<owl:someValuesFrom rdf:resource="&odo;ECSO_00000501"/>
</owl:Restriction>
</rdfs:subClassOf>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprdb5202838.pdf</odo:ECSO_01000003>
<skos:definition>Diameter of a tree. Often measured at a specified, average distance from the ground, eg 4.5 ft (or average person's breast height). May be measured as circumference, then divided by pi.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000545 -->
<owl:Class rdf:about="&odo;ECSO_00000545">
<rdfs:label>Tree Circumference</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;MeasurementType"/>
<skos:definition>Girth. Distance around the tree, often a specified, average distance from the ground, eg 4.5 ft (or average person's breast height). </skos:definition>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprdb5202838.pdf</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000546 -->
<owl:Class rdf:about="&odo;ECSO_00000546">
<rdfs:label>Process</rdfs:label>
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000547 -->
<owl:Class rdf:about="&odo;ECSO_00000547">
<rdfs:label>Tree growth</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000540"/>
<skos:definition>Tree growth is computed from sequential measurements of a tree that often depend on the species and its form. Measurements include (but are not limited to) height, circumference and diamater, eg, diameter at breast height, or DBH.</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://www.fia.fs.fed.us/library/fact-sheets/p3-factsheets/tree-growth.pdf
https://en.wikipedia.org/wiki/Tree_measurement</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_00000549 -->
<owl:Class rdf:about="&odo;ECSO_00000549">
<rdfs:label>DBH Tree diameter at breast height</rdfs:label>
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000544"/>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprdb5202838.pdf</odo:ECSO_01000003>
<skos:definition>Domain protocol for measuring the diameter of a tree. Measured at a specified, average distance from the ground, eg 4.5 ft (or average person's breast height). May be measured as circumference, then divided by pi.</skos:definition>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_Leaf_Decomposition -->
<owl:Class rdf:about="&odo;ECSO_Leaf_Decomposition">
<rdfs:subClassOf rdf:resource="&skosdl;Concept"/>
<owl:deprecated rdf:datatype="&xsd;boolean">true</owl:deprecated>
<rdfs:comment>this concept is used for "related term' to "leaf litter carbon pool' and should not have class status. Possibly re-use as skos:altLabel {MPS, 28APR15}</rdfs:comment>
</owl:Class>
<!-- http://purl.dataone.org/odo/ECSO_Leaves -->
<owl:Class rdf:about="&odo;ECSO_Leaves">
<rdfs:subClassOf rdf:resource="&skosdl;Concept"/>
<owl:deprecated rdf:datatype="&xsd;boolean">true</owl:deprecated>
<rdfs:comment>this concept was used as a related term for 'leaf carbon pool' and does not merit class status (although we coud leave it here as a SKOS concept if we want all potential "labels" to show up in our class hierarchy that is now a "class/concept" hierarchy due to importing SKOS-dl {MPS, 28APR15}</rdfs:comment>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_24431 -->
<rdf:Description rdf:about="&obo;CHEBI_24431">
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000527"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24835 -->
<owl:Class rdf:about="&obo;CHEBI_24835">
<rdfs:subClassOf rdf:resource="&obo;CHEBI_23367"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_33582 -->
<owl:Class rdf:about="&obo;CHEBI_33582"/>
<!-- http://purl.obolibrary.org/obo/CHEBI_50860 -->
<owl:Class rdf:about="&obo;CHEBI_50860"/>
<!-- http://purl.obolibrary.org/obo/ENVO_00001998 -->
<owl:Class rdf:about="&obo;ENVO_00001998">
<skos:definition>Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms. [database_cross_reference: Adapted from Wikipedia:Soil]</skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/ENVO_00001998</odo:ECSO_01000003>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ENVO_00002297 -->
<rdf:Description rdf:about="&obo;ENVO_00002297">
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_00010483 -->
<rdf:Description rdf:about="&obo;ENVO_00010483">
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_01000254 -->
<rdf:Description rdf:about="&obo;ENVO_01000254">
<rdfs:subClassOf rdf:resource="&oboe-core;Entity"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_01000307 -->
<owl:Class rdf:about="&obo;ENVO_01000307"/>
<!-- http://purl.obolibrary.org/obo/PATO_0000001 -->
<rdf:Description rdf:about="&obo;PATO_0000001"/>
<!-- http://purl.obolibrary.org/obo/PATO_0001305 -->
<rdf:Description rdf:about="&obo;PATO_0001305">
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000518"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/PATO_0001985 -->
<rdf:Description rdf:about="&obo;PATO_0001985">
<rdfs:subClassOf rdf:resource="&odo;ECSO_00000518"/>
</rdf:Description>
<!-- http://www.w3.org/TR/skos-reference/skos-owl1-dl#Concept -->
<owl:Class rdf:about="&skosdl;Concept">
<rdfs:label>Concept</rdfs:label>
<rdfs:isDefinedBy>http://www.w3.org/2004/02/skos/core</rdfs:isDefinedBy>
<skos:definition>An idea or notion; a unit of thought</skos:definition>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.dataone.org/odo/ECSO_00000010 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000010">
<rdfs:label>Carbon Cycle Component</rdfs:label>
<odo:ECSO_01000003>"carbon cycle." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/carbon+cycle</odo:ECSO_01000003>
<skos:definition>The parts that make up the combined processes that cycle carbon, (including photosynthesis, decomposition, and respiration) between its major reservoirs (the atmosphere, oceans, and living organisms).</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000011 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000011">
<rdfs:label>Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000004>Carbon fluxes are the movement of Carbon from one place (Source) to another (Sink). Carbon fluxes all have dimensions of {mass or amount of} Carbon per area (or volume) per time
biochemically-oriented projects use moles (e.g., for Stoichiometry) rather than kg to quantify the amount of Carbon, whereas Climate-oriented projects use kg</odo:ECSO_01000004>
<odo:ECSO_01000003>Litton, C.M. et al. Carbon allocation in forest ecosystems. Global Change Biology. V 13 I 10. pp. 2089 - 2109. July 2007.</odo:ECSO_01000003>
<odo:ECSO_01000005>unknown.</odo:ECSO_01000005>
<skos:definition>The rate at which a mass of carbon moves to or from a particular component of the ecosystem per unit time.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000012 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000012">
<rdfs:label>Dissolved Organic Carbon Flux</rdfs:label>
<odo:ECSO_01000003>Wangersky, P.J. Dissolved organic carbon methods: a critical review. Marine Chemistry. V 41 I 1-3. pp. 61-74. 1993.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000006>DOC flux</odo:ECSO_01000006>
<skos:definition>The rate at which a mass of dissolved organic carbon moves to or from a particular component of an ecosystem per unit time. Dissolved organic cabon is defined as the fraction of organic matter which is neither excluded nor adsorbed by the filter used to remove particulate organic carbon, and which is not volatile enough to be lost by the acidification and purging technique used to remove inorganic carbon.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000013 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000013">
<rdfs:label>Fire Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Johnson, E.A. and Miyanishi, K. Forest Fires: Behavior and Ecological Effects. Academic Press. 2001</odo:ECSO_01000003>
<skos:definition>The mass of carbon released from burning vegetation per unit time.</skos:definition>
<odo:ECSO_01000004>Fire Carbon Flux is a measure of carbon released into the atmosphere due to fire (MPS, 2015)</odo:ECSO_01000004>
<skos:altLabel>Fire Emissions</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000014 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000014">
<rdfs:label>Net Ecosystem Exchange Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000006>NEE</odo:ECSO_01000006>
<skos:altLabel>Net Ecosystem Exchange</skos:altLabel>
<odo:ECSO_01000003>Hayes, D.J. et al. Reconciling estimates of the contemporary North American carbon balance among terrestrial biosphere models, atmospheric inversions, and a new approach for estimating net ecosystem exchange from inventory-based data. Global Change Biology. V 8, i 4. pp. 1282-1299. April 2012. DOI: 10.1111/j.1365-2486.2011.02627.x</odo:ECSO_01000003>
<skos:altLabel>NEE</skos:altLabel>
<skos:definition>The magnitude of carbon sources and sinks is defined as the vertical exchange of CO2 between the surface (land or ocean) and the atmosphere.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000015 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000015">
<rdfs:label>Primary Production Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The process of carbon fixation by autotrophic carbon-fixing tissues per unit ground or water area and time.</skos:definition>
<rdfs:comment>http-en.wikipedia.org/wiki/Primary_production
Gross primary production (GPP) is the _amount_ of chemical energy as biomass that primary producers create in a given length of time. (GPP is sometimes confused with Gross Primary productivity, which is the _rate_ at which photosynthesis or chemosynthesis occurs.)
For most purposes (including this one) the two can be the same. It's most practical to measure production over a given time interval and area (or volume), and that amounts to an areal (or volumetric) rate.</rdfs:comment>
<odo:ECSO_01000003>Inferred from: Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>Primary productivity</skos:altLabel>
<skos:altLabel>Primary production</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000016 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000016">
<rdfs:label>Respiration Carbon Flux</rdfs:label>
<skos:altLabel>Total Respiration</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:definition>CO2 produced by organisms and emitted to the environment per unit ground or water area and time.</skos:definition>
<skos:definition>CO2 produced by organisms and emitted to the environment per unit ground or water area and time. Equivalent to the sum of autotrophic and heterotrophic respiration.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000017 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000017">
<rdfs:label>Autotrophic Respiration Carbon Flux</rdfs:label>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:definition>The sum of respiration (CO2 production) by all living parts of primary producers per unit ground or water area and time.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Autotrophic Respiration</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000018 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000018">
<rdfs:label>Heterotrophic Respiration Carbon Flux</rdfs:label>
<skos:definition>The respiration rate of heterotrophic organisms (animals and microbes) summed per unit ground or water area and time.</skos:definition>
<skos:altLabel>Heterotrophic Respiration</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000020 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000020">
<rdfs:label>Gross Primary Production Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>GPP</skos:altLabel>
<rdfs:comment>primary production before the autotrphs' own respiration is subtracted.
also called photosynthetic rate, or carbon fixation rate.
Synonyms: GPP</rdfs:comment>
<skos:definition>The sum of gross carbon fixation by autotrophic carbon-fixing tissues per unit ground or water area and time.</skos:definition>
<skos:altLabel>Gross Primary Production</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<rdfs:comment>Primary production before the autotrophs' own respiration is subtracted.
Also called photosynthetic rate, or carbon fixation rate.</rdfs:comment>
<skos:altLabel>Gross Primary Productivity</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000021 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000021">
<rdfs:label>Net Primary Production Carbon Flux</rdfs:label>
<rdfs:comment>the amount of primary production available for export (ie, gross, minus losses, like the autotrophs' own respiration, or other loss (exudation) not used by the carbon-fixing organism itself)
= gross primary production - autotrophic respiration
synonyms: NPP</rdfs:comment>
<skos:definition>Gross primary production (GPP) minus autotrophic respiration (AR) per unit ground or water area and time.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Net Primary Productivity</skos:altLabel>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>NPP</skos:altLabel>
<skos:altLabel>Net Primary Production</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000025 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000025">
<rdfs:label>Carbon Pool</rdfs:label>
<skos:definition>Carbon Pools are amounts of carbon in the system. dimensions are mass Carbon per area (eg, kg per m2
(can these be moles?)
{contributor, citation unkknown}</skos:definition>
<odo:ECSO_01000004>Carbon Pools are reservoirs in the system with the capacity to exchange. Usually scientists are interested in the size of carbon pools, and the movement of carbon between pools. Carbon pools can vary widely in scale, from an ecosystem to an species functional level. The dimensions are likely to be mass or moles Carbon per area (eg, kg per m2).</odo:ECSO_01000004>
<skos:definition>A reservoir with the capacity to store and release carbon, such as soil, terrestrial vegetation, the ocean, and the atmosphere {contributed by margaret, from</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Name of Each Carbon Pool</skos:altLabel>
<odo:ECSO_01000003>"carbon pool." McGraw-Hill Dictionary of Scientific & Technical Terms, 6E. 2003. The McGraw-Hill Companies, Inc. 20 Feb. 2015 http-encyclopedia2.thefreedictionary.com/carbon+pool</odo:ECSO_01000003>
<odo:ECSO_01000004>Carbon Pools are reservoirs in the system with the capacity to exchange carbon. Usually scientists are interested in the size of pools, and the movement of carbon between pools. The dimensions of a carbon pool are likely to be mass or moles Carbon per area or volume (eg, kg per m2).</odo:ECSO_01000004>
<odo:ECSO_01000005>O'Brien, pers comm. 2015-02-20</odo:ECSO_01000005>
<rdfs:comment>Carbon Pools are amounts of carbon in the system. diimensions are mass Carbon per area (eg, kg per m2
(can these be moles?)</rdfs:comment>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000027 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000027">
<rdfs:label>Soil Carbon Pool</rdfs:label>
<skos:definition>The mass of carbon contained within the top layer of the earth's surface in which plants can grow, consisting of rock and mineral particles mixed with decaying organic matter and having the capability of retaining water.</skos:definition>
<odo:ECSO_01000003>"soil." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/soil</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:altLabel>Total Soil Carbon</skos:altLabel>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000028 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000028">
<rdfs:label>Plankton Carbon Pool
</rdfs:label>
<skos:definition>The mass of carbon contained in free-floating organisms of the sea and fresh water that for the most part move passively with the water currents and consist mostly of microorganisms and small plants and animals.</skos:definition>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000030 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000030">
<rdfs:label>Leaf Carbon Pool</rdfs:label>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<odo:ECSO_01000008>leaves</odo:ECSO_01000008>
<rdfs:comment>'leaf carbon pool' and 'leaf litter carbon pool' also had associated with them the concepts 'leaves' and 'leaf decomposition' as related terms. These latter two concepts have been removed at this time as too general (leaves) or too processual (leaf decomposition as opposed to 'leaf decompositional pool'). Might consider adding these back in as skos:alLabel.</rdfs:comment>
<skos:definition>The mass of carbon contained within flattened photosynthetic structures emerging laterally from a main axis or stem and possessing true vascular tissue.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000031 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000031">
<rdfs:label>Benthic Algae Carbon Pool</rdfs:label>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
<skos:definition>The mass of carbon present in algae on the seafloor.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000032 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000032">
<rdfs:label>Grass Carbon Pool</rdfs:label>
<odo:ECSO_01000003>"grass." Collins English Dictionary – Complete and Unabridged. 1991, 1994, 1998, 2000, 2003. HarperCollins Publishers 24 Feb. 2015 http-www.thefreedictionary.com/grass</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The mass of carbon contained within monocotyledonous plants of the family Poaceae, having jointed stems sheathed by long, narrow leaves, flowers in spikes, and seedlike fruits.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000033 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000033">
<rdfs:label>Wood Carbon Pool</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>"wood." American Heritage® Dictionary of the English Language, Fifth Edition. 2011. Houghton Mifflin Harcourt Publishing Company 24 Feb. 2015 http-www.thefreedictionary.com/wood</odo:ECSO_01000003>
<skos:definition>The mass of carbon contained in the tough, fibrous substance lying beneath the bark of trees and shrubs, consisting of the vascular tissue known as xylem and composed chiefly of cellulose and lignin.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000034 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000034">
<rdfs:label>Leaf Litter Carbon Pool</rdfs:label>
<skos:definition>The mass of carbon contained in the partly decomposed remains of plants on the surface and in the upper layers of the soil.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000008>leaves</odo:ECSO_01000008>
<rdfs:comment>synonyms from LTER searched terms (mob, 2015-03-24)</rdfs:comment>
<odo:ECSO_01000008>leaf decomposition</odo:ECSO_01000008>
<odo:ECSO_01000003>Purves, W.K. et al. Life, the science of biology. Sinauer Associates, Inc. 5th Edition. 1998.</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000035 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000035">
<rdfs:label>Dissolved Organic Carbon Pool</rdfs:label>
<odo:ECSO_01000003>TO DO, Margaret</odo:ECSO_01000003>
<skos:definition>TO DO, Margaret</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000037 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000037">
<rdfs:label>Annual Net Primary Productivity Flux</rdfs:label>
<skos:altLabel>ANPP</skos:altLabel>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chapin, F.J. et al. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems. V 9 I 7. pp. 1041-1050. 2006. DOI: 10.1007/s10021-005-0105-7</odo:ECSO_01000003>
<skos:altLabel>Annual Net Primary Productivity</skos:altLabel>
<skos:altLabel>Annual Net Primary Production</skos:altLabel>
<skos:definition>Gross primary production (GPP) minus autotrophic respiration (AR) over one year.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000039 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000039"/>
<!-- http://purl.dataone.org/odo/ECSO_00000040 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000040"/>
<!-- http://purl.dataone.org/odo/ECSO_00000043 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000043">
<rdfs:label>Total_Living_Biomass_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total carbon content of the living biomass (leaves+roots+wood)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000044 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000044">
<rdfs:label>Net_Longwave_Radiation_MOV</rdfs:label>
<skos:definition>Incident longwave radiation minus simulated outgoing longwave radiation (positive into grnd)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000045 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000045">
<rdfs:label>Total_Soil_Wetness_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Vertically integrated soil moisture divided by maximum allowable soil moisture above wilting point</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000046 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000046">
<rdfs:label>Near_Surface_CO2_Concentration_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<rdfs:comment>EquivalentTo: concentration and measurementFor only ofEntity only partOf only Air</rdfs:comment>
<skos:definition>Near surface dry air CO2 mole fraction</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000047 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000047">
<rdfs:label>Total_Respiration_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total respiration (TotalResp=AutoResp+heteroResp, always positive)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000048 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000048">
<rdfs:label>Absorbed_Fraction_Incoming_PAR_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Absorbed fraction incoming photosyntetically active radiation</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000049 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000049">
<rdfs:label>Near_Surface_Air_Temperature_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Near surface air temperature</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000050 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000050">
<rdfs:label>Leaf_Area_Index_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Area of leaves per area ground</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000051 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000051">
<rdfs:label>Surface_Pressure_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Surface pressure</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000052 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000052">
<rdfs:label>Average_Layer_Soil_Moisture_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Soil water content in each soil layer, including liquid, vapor and ice</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000053 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000053">
<rdfs:label>Average_Layer_Soil_Temperature_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Average soil temperature in each soil layer</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000054 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000054">
<rdfs:label>Surface_Runoff_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Runoff from the landsurface and/or subsurface stormflow</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000055 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000055">
<rdfs:label>Soil_Layer_Top_Depth_MOV</rdfs:label>
<skos:definition>Depth from soil surface to top of soil layer</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000056 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000056">
<rdfs:label>Near_Surface_Module_Of_The_Wind_MOV</rdfs:label>
<skos:definition>Near surface wind magnitude</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000057 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000057">
<rdfs:label>Size_Of_Each_Carbon_Pool_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total size of each carbon pool vertically integrated over the entire soil column</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000058 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000058">
<rdfs:label>Soil_Layer_Node_Depth_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Depth from soil surface to layer prognostic variables; typically center of soil layer</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000059 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000059">
<rdfs:label>Snow_Water_Equivalent_MOV</rdfs:label>
<skos:definition>Total water mass of snow pack, including ice and liquid water</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000060 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000060">
<rdfs:label>Total_Soil_Carbon_MOV</rdfs:label>
<skos:definition>Total soil and litter carbon content vertically integrated over the enire soil column</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000061 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000061">
<rdfs:label>Autotrophic_Respiration_MOV</rdfs:label>
<skos:definition>Autotrophic respiration rate (always positive)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000062 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000062">
<rdfs:label>Rainfall_Rate_MOV</rdfs:label>
<skos:definition>Rainfall rate</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000063 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000063">
<rdfs:label>Longwave_Albedo_MOV</rdfs:label>
<skos:definition>Longwave Albedo</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000064 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000064">
<rdfs:label>Gross_Primary_Productivity_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>MsTMIP Output: Rate of photosynthesis (always positive)</skos:definition>
<odo:ECSO_01000001>mob</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000065 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000065">
<rdfs:label>Name_Of_Each_Carbon_Pool_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Name of each carbon pool (i.e., "wood," or "Coarse Woody Debris")</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000066 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000066">
<rdfs:label>Soil_Layer_Bottom_Depth_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Depth from soil surface to bottom of soil layer</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000067 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000067">
<rdfs:label>Heterotrophic_Respiration_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Heterotrophic respiration rate (always positive)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000068 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000068">
<rdfs:label>Active_Layer_Thickness_MOV</rdfs:label>
<skos:definition>Thaw depth; depth to zero centigrade isotherm in permafrost</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000069 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000069">
<rdfs:label>Net_Shortwave_Radiation_MOV</rdfs:label>
<skos:definition>Incident shortwave radiation minus simulated outgoing shortwave radiation (positive into grnd)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000070 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000070">
<rdfs:label>Total_Snow_Depth_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Total snow depth</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000071 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000071">
<rdfs:label>Fire_Emissions_MOV</rdfs:label>
<skos:definition>Flux of carbon due to fires (always positive)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000072 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000072">
<rdfs:label>Surface_Incident_Longwave_Radiation_MOV</rdfs:label>
<skos:definition>Surface incident longwave radiation</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000073 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000073">
<rdfs:label>Above_Ground_Woody_Biomass_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Total above ground wood biomass</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000074 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000074">
<rdfs:label>Subsurface_Runoff_MOV</rdfs:label>
<skos:definition>Gravity soil water drainage and/or soil water lateral flow</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000075 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000075">
<rdfs:label>Sensible_Heat_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Sensible heat flux into the boundary layer (positive into atmosphere)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000076 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000076">
<rdfs:label>Net_Ecosystem_Exchange_MOV</rdfs:label>
<skos:definition>Net Ecosystem Exchange (NEE=HeteroResp+AutoResp-GPP, positive into atmosphere)</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000077 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000077">
<rdfs:label>Net_Primary_Productivity_MOV</rdfs:label>
<rdfs:label>Shortwave_Albedo_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Net Primary Productivity (NPP=GPP-AutoResp, positive into plants)</skos:definition>
<skos:definition>Shortwave albedo</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000078 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000078">
<rdfs:label>Surface_Incident_Shortwave_Radiation_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<skos:definition>Surface incident shortwave radiation</skos:definition>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000079 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000079">
<rdfs:label>Total_Evaporation_MOV</rdfs:label>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Sum of all evaporation sources (positive into atmosphere)</skos:definition>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000080 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000080">
<rdfs:label>Latent_Heat_MOV</rdfs:label>
<odo:ECSO_01000003>http-nacp.ornl.gov/MsTMIP_variables.shtml, accessed 2015-03-25</odo:ECSO_01000003>
<odo:ECSO_01000001>Chung-Yi Hou, orcid.org/0000-0002-8087-1775</odo:ECSO_01000001>
<skos:definition>Latent heat flux into the boundary layer (positive into atmosphere)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000081 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000081"/>
<!-- http://purl.dataone.org/odo/ECSO_00000082 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000082">
<rdfs:label>Field Method</rdfs:label>
<skos:definition>strawman definition from margaret:
a Field_Method is a method for determining a component of primary production that involves observations or measurements of the real world. A field method may have steps which could be considered 'modeling' (such as development of an allometric model of tree growth based on height), but measurements "in the field" (eg, of trees) are always involved. compare to Modeled_Method.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000083 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000083">
<rdfs:label>Modeled Method</rdfs:label>
<skos:definition>strawman definition from Margaret
a Modeled_Method (is Simulated_Method better?) uses only data obtained from some source. It does not directly measure any real phenomenon.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000090 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000090">
<rdfs:label>Peak Biomass Harvest Method</rdfs:label>
<odo:ECSO_01000005>Fahey and Knapp, 2007, p33</odo:ECSO_01000005>
<skos:definition>Peak_Biomass_Harvest_Method is an estimate of above ground NPP based on the above ground biomass harvested once, usually near the end of the growing season, at or just after the time of peak biomass</skos:definition>
<odo:ECSO_01000003>Fahey and Knapp, 2007, p33</odo:ECSO_01000003>
<odo:ECSO_01000004>The "Peak Standing Biomass Harvest" method is recommended for grasslands that meet the following criteria:
1) there is little carryover of living biomass from previous years due to distinct dormant season or fire during the dormant season or the previous year's biomass can be easily recognized and separated from the current year's biomass (living and dead)
2) the growing season is sufficiently short or plant material is of such low quality that decomposition of biomass produced can be ignored
3) consumption of plants by herbivores is minimal (i.e., large grazers are absent and small vertebrates and invertebrates can be ignored).</odo:ECSO_01000004>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000091 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000091">
<rdfs:label>Eddy Covariance Method</rdfs:label>
<skos:definition>The eddy covariance method is an atmospheric measurement technique to measure and calculate vertical turbulent fluxes within atmospheric boundary layers, and analyzes high-frequency wind and scalar atmospheric data series, to yield exchange rates (fluxes) of trace gasses.</skos:definition>
<odo:ECSO_01000003>http-en.wikipedia.org/wiki/Eddy_covariance</odo:ECSO_01000003>
<odo:ECSO_01000004>It is frequently used to estimate momentum, heat, water vapor, carbon dioxide and methane fluxes. The technique is mathematically complex, and requires significant care in setting up and processing data. To date, there is no uniform terminology or a single methodology for the Eddy Covariance technique.
The technique has additionally proven applicable under water to the benthic zone for measuring oxygen fluxes between seafloor and overlying water.[6] In these environments, the technique is generally known as the eddy correlation technique, or just eddy correlation.
For CO2.... tbd</odo:ECSO_01000004>
<rdfs:comment>add these synonyms (near? exact?): also known as eddy correlation and eddy flux</rdfs:comment>
<odo:ECSO_01000005>http-en.wikipedia.org/wiki/Eddy_covariance</odo:ECSO_01000005>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000093 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000093">
<rdfs:label>Oxygen Evolution LightDark Method</rdfs:label>
<skos:definition>The stoichiometry of phtotsynthesis is well known. So you can measure O2 evolution, and back calculate to CO2 use.
usually, there is a "iight bottle" and "dark bottle". O2 evolution in the Light bottle is the net result, or sum, of all processes (GPP, Autotrophic resp, and probably some heterotrophic respiration too, because heterotrophs are hard to exclude). So Light bottle = NPP.
Dark bottle is respiration, probably total, eg, autotrophs + heterotrophs.
So light + dark = GPP (or about as close as you can get with a field measurement, and assume that heterotrophs aren't respiring much.)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000094 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000094">
<rdfs:label>Allometric Method</rdfs:label>
<skos:definition>A method determining the relationship between a physical or physiological property of an organism relative to the size of the organism.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000004>an allometric method is usually accomplished with a combination of measurements that are tailored to the organism, e.g, size, growth rate, carbon content, plus some loss terms. SBC's dataset 21 has a good example of an allometric method for kelp.</odo:ECSO_01000004>
<odo:ECSO_01000003>O'Brien, pers comm, 2014-10-15</odo:ECSO_01000003>
<odo:ECSO_01000003>Begon, M., Harper, J.L., Townsend, C.R. Ecology: Individuals, Populations, and Communities. Third Edition. Blackwell Science. 1996.</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000095 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000095">
<rdfs:label>LIDAR Method</rdfs:label>
<odo:ECSO_01000003>Available from: https-www.researchgate.net/publication/233137060_Use_of_ground_and_LiDAR_data_to_model_the_NPP_of_a_Mediterranean_pine_forest [accessed Mar 25, 2015].</odo:ECSO_01000003>
<skos:definition>A LIDAR_Method for NPP is a methodology to predict the net primary production (NPP) from ground and LiDAR data</skos:definition>
<skos:altLabel>LIDAR</skos:altLabel>
<odo:ECSO_01000001>mob, 2015-03-25</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000096 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000096">
<rdfs:label>MsTMIP_Simulation</rdfs:label>
<odo:ECSO_01000003>adapted from wikipedia, Simulation</odo:ECSO_01000003>
<skos:definition>Simulation is the imitation of the operation of a real-world process or system over time. (wikipedia). A MsTMIP Simulation is a simulation carried out by the MsTMIP project (margaret)</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000200 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000200">
<rdfs:label>Areal Carbon Flux</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>A flux of carbon per unit area.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000201 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000201">
<rdfs:label>Carbon Dioxide Diffusion Flux</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The process by which carbon dioxide in the atmosphere moves across a phase boundary and into the ocean. This is a major sink of atmospheric carbon dioxide. Dissolved carbon dioxide subsequently reacts to form carbonic acid, bicarbonate ions, and carbonate ions, leading to ocean acidification.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000202 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000202">
<rdfs:label>Bicarbonate Pool</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The pool of carbon oxoanions resulting from the removal of a proton from carbonic acid.</skos:definition>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_17544</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000205 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000205">
<rdfs:label>Methane Pool</rdfs:label>
<odo:ECSO_01000003> http://purl.obolibrary.org/obo/CHEBI_16183</odo:ECSO_01000003>
<skos:definition>A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC).
</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000207 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000207">
<rdfs:label>Atmospheric Carbon Dioxide Pool</rdfs:label>
<skos:definition>Gas phase carbon dioxide molecules in the air surrounding Earth. A principle contributor to climate change and the main source of carbon used by photoautotrophs to store energy during primary production.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000208 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000208">
<rdfs:label>Dissolved Carbon Dioxide Pool</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>Carbon dioxide that has passed from the gas phase into the dissolved phase, with the the ocean begin the largest component of this pool. This process contributes to acidification by forming carbonic acid with water molecules.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000300 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000300">
<rdfs:label>CO2 Enrichment Method</rdfs:label>
<skos:definition>A method of artificially raising the atmospheric CO2 concentration in field plots in order to study effects on the ecosystem.</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000301 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000301">
<rdfs:label>Aboveground Net Primary Production Carbon Flux</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>Gross primary productivity (GPP) minus autotrophic respiration (AR) in plant segments other than the roots, e.g. leaves and shoots.</skos:definition>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000308 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000308">
<rdfs:label>Functional Level</rdfs:label>
<skos:definition>Functional levels defined here:
http://www.physicalgeography.net/fundamentals/9d.html
maybe others.
</skos:definition>
<odo:ECSO_01000001>Margaret O'Brien</odo:ECSO_01000001>
<rdfs:comment>This class and all subclasses should be incorporated into ENVO.</rdfs:comment>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000309 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000309">
<rdfs:label>Ecosystem</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
<skos:definition>Ecosystems are dynamic entities composed of the biological community and the abiotic environment.
</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000310 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000310">
<rdfs:label>Community</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>In ecology, a community is an assemblage of two or more populations of different species occupying the same geographical area. (wikipedia) An ecological unit composed of a group of organisms or a population of different species occupying a particular area, usually interacting with each other and their environment. (biology-online.org)</skos:definition>
<odo:ECSO_01000003>http://ecoinformatics.org/oboe/oboe.1.0/oboe-ecology.owl#EcologicalCommunity</odo:ECSO_01000003>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000311 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000311">
<rdfs:label>Population</rdfs:label>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<skos:definition>A population comprises all the individuals of a given species in a specific area or region at a certain time.
</skos:definition>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000312 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000312">
<rdfs:label>Organism</rdfs:label>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<skos:definition>An organism is a single indivual. do we really have any carbon cycle data for a single organism? maybe not.
no ref today.</skos:definition>
<odo:ECSO_01000001>Margaret O'brien</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000313 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000313">
<rdfs:label>Species</rdfs:label>
<odo:ECSO_01000001>Margaret O'brien</odo:ECSO_01000001>
<rdfs:comment>This class should be incorporated into ENVO.</rdfs:comment>
<odo:ECSO_01000003>http://www.physicalgeography.net/fundamentals/9d.html</odo:ECSO_01000003>
<skos:definition>A group of interbreeding organisms that do not ordinarily breed with members of other groups.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000318 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000318">
<rdfs:label>has State</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436
</odo:ECSO_01000003>
<skos:definition>Describes the physical state of a substance</skos:definition>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436
</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000319 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000319">
<rdfs:label>has Location</rdfs:label>
<skos:definition>Defines where a class exists or takes place</skos:definition>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000320 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000320">
<rdfs:label>Dissolution Carbon Flux</rdfs:label>
<odo:ECSO_01000003>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000003>
<odo:ECSO_01000001>Chase LeCroy, orcid.org/0000-0002-1338-9436</odo:ECSO_01000001>
<skos:definition>The rate at which carbon dissolves, moving from one pool to another.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000325 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000325">
<rdfs:label>Carbonate</rdfs:label>
<skos:altLabel>CO3</skos:altLabel>
<odo:ECSO_01000003> http://purl.obolibrary.org/obo/CHEBI_41609
</odo:ECSO_01000003>
<skos:definition>Carbon oxoanions that have formula CO3.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000326 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000326">
<rdfs:label>Bicarbonate</rdfs:label>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_17544</odo:ECSO_01000003>
<skos:altLabel>HCO3</skos:altLabel>
<skos:definition>Carbon oxoanions resulting from the removal of a proton from carbonic acid.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_00000327 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_00000327">
<rdfs:label>Carbohydrate</rdfs:label>
<skos:definition>Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates.</skos:definition>
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/CHEBI_16646</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000001 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000001">
<rdfs:label>definition_Contributor</rdfs:label>
<skos:definition>"contributor" is an OWL "Annotation property" that names the person contributing the content, so s/he can be contacted, especially during development.</skos:definition>
<odo:ECSO_01000004>The "contributor" Annotation Property" is to record the name of the those contributing to the resource.
If there is any potential ambiguity, an identifier should be added, including the system to which it belongs.</odo:ECSO_01000004>
<odo:ECSO_01000007>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000007>
<odo:ECSO_01000003>O'Brien, pers comm. 2015-02-15</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322, Shild</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000003 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000003">
<rdfs:label rdf:datatype="&rdfs;Literal">definition_Source</rdfs:label>
<odo:ECSO_01000003>Schildhauer, pers comm, 05Feb2015, orcid.org/0000-0003-0632-7576</odo:ECSO_01000003>
<skos:definition>"definitionSource" is the Annotation property that can be used to provide the reference source or Authority for the "definition" (of interest), as an ISBN,DOI, bibliographic citation, etc. to the source of the "definition" contained in an associated "definition" Annotation property that is attached (annotated) to the concept.
Ideally a definition Source is structured in a well-known and accepted format, that provides an unambiguous pointer to a source reference, but often even some accurate indication of a reference source is better than nothing at all.</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000004 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000004">
<rdfs:label>description</rdfs:label>
<skos:definition rdf:datatype="&rdfs;Literal">"description" is an OWL "Annotation property" that contains a a more verbose, less prescriptive natural language explication of the concept to which it is attached (or applied, or annotated) in contrast to a "definition" Annotation property.
Use the "definition" Annotation property for scientific concepts when possible, as opposed to the "description" Annotation property</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
<odo:ECSO_01000003>Schildhauer, pers comm, 05Feb2014, orcid.org/0000-000300632-7576</odo:ECSO_01000003>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000005 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000005">
<rdfs:label>description_Source</rdfs:label>
<skos:definition>"description_Source" is the Annotation property that can be used to provide the reference source or Authority, as an ISBN,DOI, bibliographic citation, etc. to the source of the "description" contained in an associated "description" Annotation property that is attached (annotated) to some concept.
Ideally a descriptionSource is structured in a well-known and accepted format, that provides an unambiguous pointer to a source reference, but often even some accurate indication of a reference source is better than nothing at all.
As description Annotation properties are often not as rigorous, and hence looser and more verbose than definition Annotation properties, these fields may be more readily used for informal pedagogical advice and direction rather than being proscriptive</skos:definition>
<odo:ECSO_01000001>Schildhauer, orcid.org/0000-0003-0632-7576</odo:ECSO_01000001>
<odo:ECSO_01000005>Schildhauer, pers comm, 05Feb2015, orcid.org/0000-0003-0632-7576</odo:ECSO_01000005>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000006 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000006">
<rdfs:label>has_Exact_Synonym</rdfs:label>
<rdfs:comment>We are not planning to use has_Broad_Synonym or has_Narrow_Synonym at this time. although other ontologies do. the concepts of "broad" and "narrow" imply relationships that could be better described with the class hierarchy.</rdfs:comment>
<skos:definition>has_Exact_Synonym is an OWL annotation property that holds an alternate name or lexical variant of an owl class.</skos:definition>
<odo:ECSO_01000001>mobb</odo:ECSO_01000001>
<odo:ECSO_01000005>Margaret O'Brien, 2015-03-18</odo:ECSO_01000005>
<odo:ECSO_01000003>ad hoc</odo:ECSO_01000003>
<odo:ECSO_01000004>The DataONE carbon flux ontology uses synonyms for terms that may not be well defined. But we know that they are used, and refer to an owl class. I.e., a concept can have a synonym, but a concept should not be a synonym.</odo:ECSO_01000004>
<rdfs:seeAlso>has_Related_Synonym</rdfs:seeAlso>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000007 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000007">
<rdfs:label>example_Of_Usage</rdfs:label>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003>O'Brien, pers comm, 2015-02-19</odo:ECSO_01000003>
<odo:ECSO_01000004>"example_Of_Usage" is for providing examples. It should contain actual sample strings for the resource it applies to. longer, text descriptions of good practice for the resource belong in the "description" annotation.</odo:ECSO_01000004>
<skos:definition>"example_Of_Usage" is an OWL annotation property to record examples of how the concept or property should be used.</skos:definition>
<odo:ECSO_01000005>O'Brien, pers comm, 2015-02-19</odo:ECSO_01000005>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO_01000008 -->
<owl:NamedIndividual rdf:about="&odo;ECSO_01000008">
<rdfs:label>has_Related_Synonym</rdfs:label>
<odo:ECSO_01000005>Margaret O'Brien, 2015-03-18</odo:ECSO_01000005>
<odo:ECSO_01000001>mobb</odo:ECSO_01000001>
<odo:ECSO_01000003>ad hoc!</odo:ECSO_01000003>
<rdfs:seeAlso>has_Exact_Synonym</rdfs:seeAlso>
<odo:ECSO_01000004>The DataONE carbon flux ontology uses synonyms for terms that may not be well defined. But we know that they are used, and refer to an owl class. I.e., a concept can have a synonym, but a concept should not be a synonym.</odo:ECSO_01000004>
<skos:definition>has_Related_Synonym is an owl annotation property to hold a term that is not an owl class, but is a primary term found in the literature but is not necessarily correct.</skos:definition>
</owl:NamedIndividual>
<!-- http://purl.dataone.org/odo/ECSO__tons -->
<owl:NamedIndividual rdf:about="&odo;ECSO__tons"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:NamedIndividual rdf:about="&rdfs;label">
<rdfs:label>rdfs:label</rdfs:label>
<skos:definition>rdfs:label is an instance of rdf:Property that may be used to provide a human-readable version of a resource's name</skos:definition>
<odo:ECSO_01000005>O'Brien, 2015-02-19</odo:ECSO_01000005>
<odo:ECSO_01000004>rdfs:label is a built in annotation property, and W3C does not give guidelines beyond the definition. In the DataONe Carbon Flux ontology, we use rdfs:label for a human-readable version of the resource's name, but adhere to a particular pattern. Our goal is that content of rdfs:label are not broken into individual terms arbitrarily.
1. Our practice is to separate individual words in the rdfs:label with underscores, but maintain capitalization consistent with the conventions of the resources type (e.g., camel case for properties, capitalized words for classes, capitalized abbreviations and acronyms).
2. include namespace in the label, if resource is imported.
See example_Of_Usage, presentation_Label</odo:ECSO_01000004>
<odo:ECSO_01000007>Carbon_Flux_NASA, definition_Source, rdfs:label</odo:ECSO_01000007>
<odo:ECSO_01000001>Margaret O'Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<odo:ECSO_01000003 rdf:resource="http://www.w3.org/TR/rdf-schema/#ch_label"/>
</owl:NamedIndividual>
<!-- http://www.w3.org/TR/skos-reference/skos-owl1-dl#Concept -->
<owl:NamedIndividual rdf:about="&skosdl;Concept">
<rdfs:label>Concept</rdfs:label>
<rdfs:isDefinedBy>http://www.w3.org/2004/02/skos/core</rdfs:isDefinedBy>
<skos:definition>An idea or notion; a unit of thought</skos:definition>
</owl:NamedIndividual>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotations
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description rdf:about="&obo;ENVO_01000177">
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/ENVO_01000177</odo:ECSO_01000003>
<skos:definition>A grassland biome is a terrestrial biome which includes, across its entire spatial extent, an unbroken layer of grasses (Gramineae), sedges (Cyperaceae) or rushes (Juncaceae).</skos:definition>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
</rdf:Description>
<rdf:Description rdf:about="&obo;ENVO_00000015">
<odo:ECSO_01000003>http://purl.obolibrary.org/obo/ENVO_00000015</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322
</odo:ECSO_01000001>
</rdf:Description>
<rdf:Description rdf:about="&obo;ENVO_00002030">
<skos:definition>The aquatic biome includes the habitats around the world that are dominated by water. Three-dimensional environments classified based on characteristics such as depth, tidal flow, temperature, and proximity to landmasses, salinty of their water.
</skos:definition>
<odo:ECSO_01000003>adapted from http://animals.about.com/od/habitat-facts/fl/aquatic-biome.htm
http://www.ucmp.berkeley.edu/exhibits/biomes/aquatic.php
</odo:ECSO_01000003>
<odo:ECSO_01000001>Margaret O&apos;Brien, orcid.org/0000-0002-1693-8322</odo:ECSO_01000001>
<rdfs:comment>LTER:41
note: ENVO also references LTER:41</rdfs:comment>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// General axioms
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description>
<rdf:type rdf:resource="&owl;AllDisjointClasses"/>
<owl:members rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000012"/>
<rdf:Description rdf:about="&odo;ECSO_00000013"/>
<rdf:Description rdf:about="&odo;ECSO_00000014"/>
<rdf:Description rdf:about="&odo;ECSO_00000015"/>
<rdf:Description rdf:about="&odo;ECSO_00000016"/>
</owl:members>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="&owl;AllDisjointClasses"/>
<owl:members rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000097"/>
<rdf:Description rdf:about="&odo;ECSO_00000098"/>
<rdf:Description rdf:about="&odo;ECSO_00000099"/>
<rdf:Description rdf:about="&odo;ECSO_00000100"/>
<rdf:Description rdf:about="&odo;ECSO_00000101"/>
<rdf:Description rdf:about="&odo;ECSO_00000102"/>
<rdf:Description rdf:about="&odo;ECSO_00000103"/>
<rdf:Description rdf:about="&odo;ECSO_00000104"/>
<rdf:Description rdf:about="&odo;ECSO_00000105"/>
<rdf:Description rdf:about="&odo;ECSO_00000106"/>
<rdf:Description rdf:about="&odo;ECSO_00000107"/>
<rdf:Description rdf:about="&odo;ECSO_00000108"/>
<rdf:Description rdf:about="&odo;ECSO_00000109"/>
<rdf:Description rdf:about="&odo;ECSO_00000110"/>
<rdf:Description rdf:about="&odo;ECSO_00000111"/>
</owl:members>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="&owl;AllDisjointClasses"/>
<owl:members rdf:parseType="Collection">
<rdf:Description rdf:about="&odo;ECSO_00000309"/>
<rdf:Description rdf:about="&odo;ECSO_00000310"/>
<rdf:Description rdf:about="&odo;ECSO_00000311"/>
<rdf:Description rdf:about="&odo;ECSO_00000312"/>
<rdf:Description rdf:about="&odo;ECSO_00000313"/>
</owl:members>
</rdf:Description>
</rdf:RDF>
<!-- Generated by the OWL API (version 3.2.2.1785) http://owlapi.sourceforge.net -->