- callorder - Variable in class edu.ucsb.nceas.metacat.MetacatProfiler.Profile
-
- canInsertOrUpdate(String, String[]) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Check if the specified user can insert the document
- canProcess(String) - Method in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
Determine if the factory can handle the meta data with the given name space
- canProcess(String) - Method in class edu.ucsb.nceas.metacat.doi.datacite.DefaultDataCiteFactory
-
It can handle all namespace
- canProcess(String) - Method in class edu.ucsb.nceas.metacat.doi.datacite.EML2DataCiteFactory
-
Determine if the given name space can be handled by this factory
- CartManager - Class in edu.ucsb.nceas.metacat.cart
-
Class to query data
- CartManager() - Constructor for class edu.ucsb.nceas.metacat.cart.CartManager
-
empty constructor to initialize query
- CartManager(String) - Constructor for class edu.ucsb.nceas.metacat.cart.CartManager
-
- catalogid - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- CatalogMessageHandler - Class in edu.ucsb.nceas.metacat
-
A Class implementing callback bethods for the SAX parser to
call when processing the XML messages from the replication handler
- CatalogMessageHandler() - Constructor for class edu.ucsb.nceas.metacat.CatalogMessageHandler
-
- changePassword(String, String) - Static method in class edu.ucsb.nceas.metacat.util.GeoserverUtil
-
Change the password on the geoserver.
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
Callback method used by the SAX Parser when the text sequences of an
xml stream are detected.
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.CatalogMessageHandler
-
Take the data out of the docid and date_updated fields
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that is called for each XML text node
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
SAX Handler that is called for each XML text node
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
SAX Handler that is called for each XML text node
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.MetacatResultSet
-
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
callback method used by the SAX Parser when the text sequences of an xml
stream are detected.
- characters(char[], int, int) - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
Take the data out of the docid and date_updated fields
- checkAndSetProperty(HttpServletRequest, String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Take input from the user in an HTTP request about an property to be changed
and update the metacat property file with that new value if it has
changed from the value that was originally set.
- checkAndSetProperty(HttpServletRequest, String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- checkAndSetProperty(HttpServletRequest, String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Take input from the user in an HTTP request about an property to be
changed and update the metacat property file with that new value if it
has changed from the value that was originally set.
- checkAndSetProperty(HttpServletRequest, String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Take input from the user in an HTTP request about an property to be changed
and update the metacat property file with that new value if it has
changed from the value that was originally set.
- checkAndSetProperty(HttpServletRequest, String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Take input from the user in an HTTP request about an property to be
changed and update the metacat property file with that new value if it
has changed from the value that was originally set.
- checkAndSetProperty(String, String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Check user input against existing value and update the metacat property
file with that new value if it has changed from the value that was
originally set.
- checkExpandedPermissions(Session, SystemMetadata, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Compare all the session subjects against the expanded subjects (from listSubjects)
of the object rightsholder.
- checkSidInModifyingSystemMetadata(SystemMetadata, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
- checkURLConnection(String) - Static method in class edu.ucsb.nceas.metacat.DBEntityResolver
-
Check URL Connection for @systemId, and return an InputStream
that can be used to read from the systemId URL.
- checkV1SystemMetaPidExist(Identifier, String, String, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
A utility method for v1 api to check the specified identifier exists as a pid
Uses the IdentifierManager to call the Identifier table directly - this detects
Identifiers for deleted objects (where the SystemMetadata doesn't exist, but the Identifier remains)
- cito - Static variable in class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
- CITO_NAMESPACE - Static variable in class edu.ucsb.nceas.metacat.dataone.resourcemap.ResourceMapModifier
-
- clear() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- clearFields() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- clearQueryResultCache() - Static method in class edu.ucsb.nceas.metacat.DBQuery
-
Method to clear the query result cache.
- clearRequestMessages(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add a list of general messages to the request.
- CLIENT_VIEW_BEAN - Static variable in class edu.ucsb.nceas.metacat.clientview.ClientView
-
- clientDeleteRequest(ClientView, ClientViewHelper) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientFgdcHelper
-
Handles a client's request to delete a document.
- ClientFgdcHelper - Class in edu.ucsb.nceas.metacat.clientview
-
- ClientFgdcHelper() - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientFgdcHelper
-
- ClientHtmlHelper - Class in edu.ucsb.nceas.metacat.clientview
-
- ClientHtmlHelper() - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientHtmlHelper
-
- clientRequest(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
Main web API method for handling various actions.
- ClientView - Class in edu.ucsb.nceas.metacat.clientview
-
Description information for the ClientView bean.
- ClientView() - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientView
-
Creates a new instance of ClientView
- ClientViewBeanInfo - Class in edu.ucsb.nceas.metacat.clientview
-
- ClientViewBeanInfo() - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
- ClientViewHelper - Class in edu.ucsb.nceas.metacat.clientview
-
- ClientViewHelper(HttpServletRequest) - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
Creates a new instance of ClientViewHelper, using info in an HttpServletRequest
for initializing.
- ClientViewHelper(String, String, ClientView) - Constructor for class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
Creates a new instance of ClientViewHelper, using parameter values
for initializing.
- clientViewHelperInstance(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
This is a convenience method to reduce the amount of code in a Metacat Client.
- clone() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
Copy a AccessRule to another accessrule object
- close() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Close a DBConnection object
- close() - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
close the repository
- close() - Method in class edu.ucsb.nceas.metacat.util.DeleteOnCloseFileInputStream
-
Delete the file when the InputStream is closed
- closeConnection() - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
- closeDBObjects(PreparedStatement, DBConnection, int, Logger) - Method in class edu.ucsb.nceas.metacat.shared.BaseAccess
-
- CNodeService - Class in edu.ucsb.nceas.metacat.dataone
-
Represents Metacat's implementation of the DataONE Coordinating Node
service API.
- CNodeService - Class in edu.ucsb.nceas.metacat.dataone.v1
-
Represents Metacat's implementation of the DataONE Coordinating Node service
API.
- CNResourceHandler - Class in edu.ucsb.nceas.metacat.restservice.v1
-
CN REST service implementation handler
****************** CNCore -- DONE create() - POST /d1/cn/object/PID
listFormats() - GET /d1/cn/formats getFormat() - GET /d1/cn/formats/FMTID
getLogRecords - GET /d1/cn/log reserveIdentifier() - POST /d1/cn/reserve
listNodes() - Not implemented registerSystemMetadata() - POST /d1/meta/PID
CNRead -- DONE get() - GET /d1/cn/object/PID getSystemMetadata() - GET
/d1/cn/meta/PID resolve() - GET /d1/cn/resolve/PID assertRelation() - GET
/d1/cn/assertRelation/PID getChecksum() - GET /d1/cn/checksum search() - Not
implemented in Metacat
CNAuthorization setOwner() - PUT /d1/cn/owner/PID isAuthorized() - GET
/d1/cn/isAuthorized/PID setAccessPolicy() - POST /d1/cn/accessRules
CNIdentity - not implemented at all on Metacat
CNReplication setReplicationStatus() - PUT /replicaNotifications/PID
updateReplicationMetadata() - PUT /replicaMetadata/PID setReplicationPolicy()
- PUT /replicaPolicies/PID isNodeAuthorized() - GET
/replicaAuthorizations/PID
CNRegister -- not implemented at all in Metacat ******************
- CNResourceHandler(ServletContext, HttpServletRequest, HttpServletResponse) - Constructor for class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
- CNResourceHandler - Class in edu.ucsb.nceas.metacat.restservice.v2
-
CN REST service implementation handler
****************** CNCore -- DONE create() - POST /d1/cn/object/PID
listFormats() - GET /d1/cn/formats getFormat() - GET /d1/cn/formats/FMTID
getLogRecords - GET /d1/cn/log reserveIdentifier() - POST /d1/cn/reserve
listNodes() - Not implemented registerSystemMetadata() - POST /d1/meta/PID
CNRead -- DONE get() - GET /d1/cn/object/PID getSystemMetadata() - GET
/d1/cn/meta/PID resolve() - GET /d1/cn/resolve/PID assertRelation() - GET
/d1/cn/assertRelation/PID getChecksum() - GET /d1/cn/checksum search() - Not
implemented in Metacat
CNAuthorization setOwner() - PUT /d1/cn/owner/PID isAuthorized() - GET
/d1/cn/isAuthorized/PID setAccessPolicy() - POST /d1/cn/accessRules
CNIdentity - not implemented at all on Metacat
CNReplication setReplicationStatus() - PUT /replicaNotifications/PID
updateReplicationMetadata() - PUT /replicaMetadata/PID setReplicationPolicy()
- PUT /replicaPolicies/PID isNodeAuthorized() - GET
/replicaAuthorizations/PID
CNRegister -- not implemented at all in Metacat ******************
- CNResourceHandler(ServletContext, HttpServletRequest, HttpServletResponse) - Constructor for class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
- CNRestServlet - Class in edu.ucsb.nceas.metacat.restservice.v1
-
Routes CN REST service requests to the appropriate handler
- CNRestServlet() - Constructor for class edu.ucsb.nceas.metacat.restservice.v1.CNRestServlet
-
- CNRestServlet - Class in edu.ucsb.nceas.metacat.restservice.v2
-
Routes CN REST service requests to the appropriate handler
- CNRestServlet() - Constructor for class edu.ucsb.nceas.metacat.restservice.v2.CNRestServlet
-
- collectMultipartFiles() - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
Process the MMP request that includes files for each param
- collectMultipartParams() - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
Parse string parameters from the mime multipart entity of the request.
- collectSynchronizationFailed() - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNResourceHandler
-
- collectSynchronizationFailed() - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNResourceHandler
-
- combinateCurrentDateAndGivenTime(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationHandler
-
This method will combine given time string(in short format) to current
date.
- comment(char[], int, int) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
SAX Handler that receives notification of comments in the DTD
- comment(char[], int, int) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of comments in the DTD
- comment(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
SAX Handler that receives notification of comments in the DTD
- comment(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
SAX Handler that receives notification of comments in the DTD
- CommentNode - Class in edu.ucsb.nceas.metacat
-
A Class that represents an XML Comment node and its contents,
- CommentNode(long, long, String) - Constructor for class edu.ucsb.nceas.metacat.CommentNode
-
Construct a new CommentNode instance
- commit() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Method to make a commit command
- compare(Object, Object) - Method in class edu.ucsb.nceas.metacat.NodeComparator
-
compare two objects to determine proper sort order -- delegates to
the compare(NodeRecord, NodeRecord) method.
- compare(NodeRecord, NodeRecord) - Method in class edu.ucsb.nceas.metacat.NodeComparator
-
compare two NodeRecord objects to determine proper sort order.
- compare(Object, Object) - Method in class edu.ucsb.nceas.metacat.SubTree
-
methods from Comparator interface
- compareInlineDataFiles(String, String) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
- compareTo(Version) - Method in class edu.ucsb.nceas.metacat.Version
-
Compare this Version object to another.
- CONCRETE - Static variable in class edu.ucsb.nceas.metacat.lsid.LSIDDataLookup
-
- CONFIG_FILE_DIR - Static variable in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- CONFIG_FILE_NAME - Static variable in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- CONFIG_FILE_NAME - Static variable in class edu.ucsb.nceas.metacat.service.ServiceService
-
- CONFIG_FILE_PATH - Static variable in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- ConfigurableProperties - Class in edu.ucsb.nceas.metacat.properties
-
A suite of utility classes for the metadata configuration utility
- ConfigurableProperties() - Constructor for class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
private constructor since this is a singleton
- ConfigurationUtil - Class in edu.ucsb.nceas.metacat.util
-
A suite of utility classes for the metadata catalog server
- ConfigurationUtil() - Constructor for class edu.ucsb.nceas.metacat.util.ConfigurationUtil
-
- configureAuth(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.AuthAdmin
-
Handle configuration of the Authentication properties
- configureBackup(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.BackupAdmin
-
Handle configuration of the backup directory
- CONFIGURED - Static variable in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- CONFIGURED - Static variable in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- configureDatabase(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Handle configuration of the database the first time that Metacat starts
or when it is explicitly called.
- configureDataONE(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.D1Admin
-
Handle configuration of the database the first time that Metacat starts
or when it is explicitly called.
- configureEZID(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.EZIDAdmin
-
Handle configuration of the database the first time that Metacat starts
or when it is explicitly called.
- configureGeoserver(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.GeoserverAdmin
-
Handle configuration of the database the first time that Metacat starts
or when it is explicitly called.
- configureProperties(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.PropertiesAdmin
-
Handle configuration of the main application properties
- configureSkins(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.SkinsAdmin
-
Handle configuration of the application the first time that Metacat
starts or when it is explicitly called in the url.
- connect() - Method in class edu.ucsb.nceas.protocols.metacat.MetacatURLConnection
-
Make a connection to the URL
- connection - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- connection - Variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- constructDN(String, String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.MetacatHelper
-
Constructs a DN (Distinguished Name) string for the ecoinformatics.org
LDAP.
- constructMetacatURL(String, int, String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.MetacatHelper
-
Constructs a URL to the metacat servlet.
- CONTAINS - Static variable in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- CONTAINS - Static variable in class edu.ucsb.nceas.metacat.QueryTerm
-
- containsExtendedSQL() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Returns true if the parsed query contains and extended xml query (i.e.
- contentEquals(NodeRecord) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
Method compare two records
- ContentTypeProvider - Class in edu.ucsb.nceas.metacat
-
This class will figure out which content type it is for a given data file.
- ContentTypeProvider(String) - Constructor for class edu.ucsb.nceas.metacat.ContentTypeProvider
-
Constructor of ContentTypeProvider
- convert(Log) - Method in class edu.ucsb.nceas.metacat.dataone.convert.LogV2toV1Converter
-
Convert a v2 Log object to a v1 Log object
- convert(LogEntry) - Method in class edu.ucsb.nceas.metacat.dataone.convert.LogV2toV1Converter.LogEntryV2toV1Converter
-
Convert a v2 LogEntry object to a v1 LogEntry object
- convertPermission(Permission) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
- convertPermission(int) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
- copyFile(String, String) - Static method in class edu.ucsb.nceas.metacat.util.MetacatUtil
-
Copy a file between two locations specified as strings.
- copyInlineFile(String, String) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
- copyPermOrderAndAccessRules(AccessSection) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Method to copy a accesssection object to a new one
- create(String, Reader) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Create an XML document into the repository, making it available for
searching using the query() methods.
- create(String, Reader) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
Create an XML document in the repository.
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Adds a new object to the Node, where the object is a science metadata object.
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Adds a new object to the Node, where the object is either a data
object or a science metadata object.
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- create(Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- create(Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- createDate - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- createdate - Variable in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- createDocidQuery(String[]) - Static method in class edu.ucsb.nceas.metacat.DocumentIdQuery
-
Create an squery using some preset values for the query parameters, only
passing in the document ids to be searched.
- createDocidQueryParams(String[], Hashtable) - Static method in class edu.ucsb.nceas.metacat.DocumentIdQuery
-
Create an squery parameters table using an already-initialized hashtable
- createHandler(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Subclasses should override this method to provide the appropriate handler subclass
- createHandler(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNRestServlet
-
Provide a CNResourceHandler subclass of D1ResourceHandler
- createHandler(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNRestServlet
-
Provide an MNResourceHandler subclass of D1ResourceHandler
- createHandler(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNRestServlet
-
Provide a CNResourceHandler subclass of D1ResourceHandler
- createHandler(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNRestServlet
-
Provide an MNResourceHandler subclass of D1ResourceHandler
- createHeader(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Convert a native "item" to a "record" String.
- createJob(String, String, String, Class<Job>, Calendar, Calendar, int, String, HashMap<String, String>) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Create a job in the database.
- createJob(ScheduledJobDAO, HashMap<String, String>) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Create a job in the database
- createJobParams(Long, HashMap<String, String>) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamAccess
-
Insert job parameters into the database.
- createLDAPString(String, String, Vector<String>) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Creates an ldap credentail string from the username, organization
and dn list.
- createMapping(String, String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
create a mapping in the identifier table
- createMetacatConnection(String) - Static method in class edu.ucsb.nceas.metacat.client.MetacatFactory
-
Create a new instance of a Metacat object of raccessing a server.
- createMetadata(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml200
-
Perform the actual crosswalk.
- createMetadata(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml201
-
Perform the actual crosswalk.
- createMetadata(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml210
-
Perform the actual crosswalk.
- createMetadata(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml211
-
Perform the actual crosswalk.
- createMetadata(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml2oai_dc
-
Perform the actual crosswalk.
- createObject(String) - Static method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
Instantiate a class using the name of the class at runtime
- createObject(String) - Static method in class edu.ucsb.nceas.metacat.database.DatabaseService
-
Instantiate a class using the name of the class at runtime
- createQuery(String, String) - Static method in class edu.ucsb.nceas.metacat.DBQuery
-
format a simple free-text value query as an XML document that conforms
to the pathquery.dtd and is appropriate for submission to the DBQuery
structured query engine
- createQuery(String) - Static method in class edu.ucsb.nceas.metacat.DBQuery
-
format a simple free-text value query as an XML document that conforms
to the pathquery.dtd and is appropriate for submission to the DBQuery
structured query engine
- createResultDocument(String, QuerySpecification, Writer, String, String[], boolean) - Method in class edu.ucsb.nceas.metacat.DBQuery
-
Transforms a hashtable of documents to an xml or html result and sent
the content to outputstream.
- createResultDocument(String, QuerySpecification, Writer, String, String[], boolean, int, int, String, String, boolean) - Method in class edu.ucsb.nceas.metacat.DBQuery
-
- createSQuery(Hashtable) - Static method in class edu.ucsb.nceas.metacat.DBQuery
-
format a structured query as an XML document that conforms to the
pathquery.dtd and is appropriate for submission to the DBQuery
structured query engine
- createStatement() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
- createSystemMetadata(String, boolean, boolean) - Static method in class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
Create a system metadata object for insertion into metacat
- createSystemMetadata(boolean, String, boolean, boolean) - Static method in class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
Creates a system metadata object for insertion into metacat
- CREATOR - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- CREATORNAME - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- CREATORS - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- currentDocidsBeingIndexed - Variable in class edu.ucsb.nceas.metacat.IndexingQueue
-
- currentDocument - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- D1Admin - Class in edu.ucsb.nceas.metacat.admin
-
Control the display of the database configuration page and the processing
of the configuration values.
- D1AuthHelper - Class in edu.ucsb.nceas.metacat.dataone
-
This is delegate class for D1NodeService and subclasses.
- D1AuthHelper(HttpServletRequest, Identifier, String, String) - Constructor for class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Each instance should correspond to a single request.
- D1HttpRequest - Class in edu.ucsb.nceas.metacat.restservice
-
- D1HttpRequest(ServletRequest) - Constructor for class edu.ucsb.nceas.metacat.restservice.D1HttpRequest
-
HttpServletRequestWrapper(HttpServletRequest request)
- D1NodeService - Class in edu.ucsb.nceas.metacat.dataone
-
- D1NodeService(HttpServletRequest) - Constructor for class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Constructor - used to set the metacatUrl from a subclass extending D1NodeService
- D1NodeVersionChecker - Class in edu.ucsb.nceas.metacat.dataone
-
This class will contact the CN to figure out the version of the service
for the given node
- D1NodeVersionChecker(NodeReference) - Constructor for class edu.ucsb.nceas.metacat.dataone.D1NodeVersionChecker
-
Constructor
- D1ResourceHandler - Class in edu.ucsb.nceas.metacat.restservice
-
Base class for handling D1 REST calls in Metacat
- D1ResourceHandler(ServletContext, HttpServletRequest, HttpServletResponse) - Constructor for class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
Initializes new instance by setting servlet context,request and response
- D1RestServlet - Class in edu.ucsb.nceas.metacat.restservice
-
Metacat implemantation of Earthgrid (Ecogrid) REST API as a servlet.
- D1RestServlet() - Constructor for class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
- D1URLFilter - Class in edu.ucsb.nceas.metacat.restservice
-
- D1URLFilter() - Constructor for class edu.ucsb.nceas.metacat.restservice.D1URLFilter
-
- DAILY - Static variable in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- DATA_DISTRIBUTION - Static variable in class edu.ucsb.nceas.metacat.DistributionSection
-
- DATAACCESSLEVEL - Static variable in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
- DatabaseService - Class in edu.ucsb.nceas.metacat.database
-
- DatabaseUtil - Class in edu.ucsb.nceas.metacat.util
-
- DATACITE - Static variable in class edu.ucsb.nceas.metacat.dataone.DOIService
-
- DataCiteMetadataFactory - Class in edu.ucsb.nceas.metacat.doi.datacite
-
A factory abstract class to generate the datacite metadata (xml format) for an DOI object.
- DataCiteMetadataFactory() - Constructor for class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- DataONEConfigUtil - Class in edu.ucsb.nceas.metacat.util
-
A utility class for configuring DataONE setting
- DataONEConfigUtil() - Constructor for class edu.ucsb.nceas.metacat.util.DataONEConfigUtil
-
- DATAONEERROR - Static variable in class edu.ucsb.nceas.metacat.ReadOnlyChecker
-
- DatapackageSummarizer - Class in edu.ucsb.nceas.metacat.annotation
-
- DatapackageSummarizer() - Constructor for class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
- DataQuery - Class in edu.ucsb.nceas.metacat.dataquery
-
Class to query data
- DataQuery() - Constructor for class edu.ucsb.nceas.metacat.dataquery.DataQuery
-
empty constructor to initialize query
- DataQuery(String) - Constructor for class edu.ucsb.nceas.metacat.dataquery.DataQuery
-
- DB_DOES_NOT_EXIST - Static variable in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
- dbAdapter - Static variable in class edu.ucsb.nceas.metacat.util.ConfigurationUtil
-
- dbAdapter - Static variable in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
- dbAdapter - Static variable in class edu.ucsb.nceas.metacat.util.MetacatUtil
-
- DBAdmin - Class in edu.ucsb.nceas.metacat.admin
-
Control the display of the database configuration page and the processing
of the configuration values.
- DBConnection - Class in edu.ucsb.nceas.metacat.database
-
A class represent a connection object, it includes connection itself,
index, status, age, createtime, connection time, usageCount, warning message
- DBConnection() - Constructor for class edu.ucsb.nceas.metacat.database.DBConnection
-
Default constructor of the DBConnection class
- DBConnectionPool - Class in edu.ucsb.nceas.metacat.database
-
A class represent a DBConnection pool.
- DBDTDHandler - Class in edu.ucsb.nceas.metacat
-
A database aware Class implementing DTDHandler interface for the SAX
parser to call when processing the XML stream and intercepting notations
and unparsed entities
- DBDTDHandler(DBConnection) - Constructor for class edu.ucsb.nceas.metacat.DBDTDHandler
-
Construct an instance of the DBDTDHandler clas
- DBEntityResolver - Class in edu.ucsb.nceas.metacat
-
A database aware Class implementing EntityResolver interface for the SAX
parser to call when processing the XML stream and intercepting any
external entities (including the external DTD subset and external
parameter entities, if any) before including them.
- DBEntityResolver(DBConnection) - Constructor for class edu.ucsb.nceas.metacat.DBEntityResolver
-
Construct an instance of the DBEntityResolver class
- DBEntityResolver(DBConnection, DefaultHandler, Reader) - Constructor for class edu.ucsb.nceas.metacat.DBEntityResolver
-
Construct an instance of the DBEntityResolver class
- DBQuery - Class in edu.ucsb.nceas.metacat
-
A Class that searches a relational DB for elements and attributes that have
free text matches a query string, or structured query matches to a path
specified node in the XML hierarchy.
- DBQuery() - Constructor for class edu.ucsb.nceas.metacat.DBQuery
-
construct an instance of the DBQuery class
- DBQuery(Vector) - Constructor for class edu.ucsb.nceas.metacat.DBQuery
-
Construct an instance of DBQuery Class
BUT accept a docid Vector that will supersede
the query.printSQL() method
If a docid Vector is passed in,
the docids will be used to create a simple IN query
without the multiple subselects of the printSQL() method
Using this constructor, we just check for
a docidOverride Vector in the findResultDoclist() method
- DBSAXHandler - Class in edu.ucsb.nceas.metacat
-
A database aware Class implementing callback bethods for the SAX parser to
call when processing the XML stream and generating events.
- DBSAXHandler(DBConnection, String, String, String, String, String[], String, int, Date, Date, boolean) - Constructor for class edu.ucsb.nceas.metacat.DBSAXHandler
-
Construct an instance of the handler class In this constructor, user can
specify the version need to upadate
- DBSAXNode - Class in edu.ucsb.nceas.metacat
-
A Class that represents an XML node and its contents and
can write its own representation to a database connection
- DBSAXNode(DBConnection, String) - Constructor for class edu.ucsb.nceas.metacat.DBSAXNode
-
Construct a new node instance for DOCUMENT nodes
- DBSAXNode(DBConnection, String, String, DBSAXNode, long, String, String) - Constructor for class edu.ucsb.nceas.metacat.DBSAXNode
-
Construct a new node instance for ELEMENT nodes
- DBSAXNode(DBConnection, String, String, String, DBSAXNode, long, String) - Constructor for class edu.ucsb.nceas.metacat.DBSAXNode
-
Construct a new node instance for DTD nodes
This Node will write docname, publicId and systemId into db.
- DBSimpleQuery - Class in edu.ucsb.nceas.metacat
-
A Class that searches a relational DB for elements and attributes that
have free text matches to the query string.
- DBSimpleQuery() - Constructor for class edu.ucsb.nceas.metacat.DBSimpleQuery
-
construct an instance of the DBSimpleQuery class
- DBTransform - Class in edu.ucsb.nceas.metacat
-
A Class that transforms XML documents utitlizing XSL style sheets
Building a transformer from the .xsl is expensive, so Templates are used
as an intermediate construct to allow lightweight construction of Transformers.
- DBTransform() - Constructor for class edu.ucsb.nceas.metacat.DBTransform
-
construct a DBTransform instance.
- DBUtil - Class in edu.ucsb.nceas.metacat
-
A suite of utility classes for querying DB
- DBUtil() - Constructor for class edu.ucsb.nceas.metacat.DBUtil
-
Construct an instance of the utility class
- DBValidate - Class in edu.ucsb.nceas.metacat
-
Name: DBValidate.java
Purpose: A Class that validates XML documents
This class is designed to be parser independent
i.e.
- DBValidate() - Constructor for class edu.ucsb.nceas.metacat.DBValidate
-
Construct a new validation object
- DBValidate(String) - Constructor for class edu.ucsb.nceas.metacat.DBValidate
-
Construct a new validation object using an OASIS catalog file
- DBValidate(DBConnection) - Constructor for class edu.ucsb.nceas.metacat.DBValidate
-
Construct a new validation object using a database entity resolver
- DBVersion - Class in edu.ucsb.nceas.metacat.database
-
- DBVersion(String) - Constructor for class edu.ucsb.nceas.metacat.database.DBVersion
-
Create a database version.
- dcterms - Static variable in class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
- dcterms_source - Static variable in class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
- DECLARATIONHANDLERPROPERTY - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- decode(String) - Static method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
A method to decode the given string which is a part of a uri.
- DEFAULT_CN_URI - Static variable in class edu.ucsb.nceas.metacat.dataone.resourcemap.ResourceMapModifier
-
- DEFAULT_ENCODING - Static variable in class edu.ucsb.nceas.metacat.MetaCatServlet
-
- DefaultDataCiteFactory - Class in edu.ucsb.nceas.metacat.doi.datacite
-
Default factory to generate a simple datacite metadata xml string
- DefaultDataCiteFactory() - Constructor for class edu.ucsb.nceas.metacat.doi.datacite.DefaultDataCiteFactory
-
- delete(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Delete an XML document in the repository.
- delete(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Delete an XML document in the repository.
- DELETE - Static variable in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
HTTP Verb DELETE
- delete(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Deletes an object from the Coordinating Node
- delete(String, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Deletes an object from the Member Node, where the object is either a
data object or a science metadata object.
- delete(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.SystemMetadataMap
-
- delete(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Deletes an object from the Member Node, where the object is either a
data object or a science metadata object.
- delete(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- delete(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- delete(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- delete(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- delete(String, String, String[], String, boolean) - Static method in class edu.ucsb.nceas.metacat.DocumentImpl
-
Archive an object from the xml_documents table to the xml_revision table (including other changes as well).
- delete(String, boolean, String, String[], String, boolean) - Static method in class edu.ucsb.nceas.metacat.DocumentImpl
-
Archive an object from the xml_documents table to the xml_revision table (including other changes as well).
- DELETE - Static variable in class edu.ucsb.nceas.metacat.EventLog
-
- delete(Identifier) - Method in class edu.ucsb.nceas.metacat.index.IndexEventMapStore
-
- DELETE - Static variable in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
HTTP Verb DELETE
- delete(String, String) - Method in class edu.ucsb.nceas.metacat.spatial.SpatialDataset
-
Deletes given docid from the spatial cache.
- DELETE_MESSAGE - Static variable in class edu.ucsb.nceas.metacat.clientview.ClientView
-
- DELETE_SCHEDULED_WORKFLOW_ERROR - Static variable in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- deleteAll(Collection<Identifier>) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.SystemMetadataMap
-
- deleteAll(Collection<Identifier>) - Method in class edu.ucsb.nceas.metacat.index.IndexEventMapStore
-
- DELETEDMESSAGE - Static variable in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
- deleteDocument(String) - Method in class edu.ucsb.nceas.metacat.spatial.SpatialHarvester
-
Given a docid, will attempt to delete it from spatial cache
- deleteInlineFiles() - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
- deleteInlineFiles() - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
- deleteJob(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>, String, String[]) - Method in class edu.ucsb.nceas.metacat.scheduler.BaseScheduler
-
- deleteJob(String) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Remove the job from the scheduler and set the job status to deleted in the database
- deleteJob(ScheduledJobDAO) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Remove the job from the scheduler and set the job status to deleted in the database
- deleteJob(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>, String, String[]) - Method in class edu.ucsb.nceas.metacat.workflow.WorkflowSchedulerClient
-
delete job - to be implemented
- deleteJobParams(Long) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamAccess
-
Remove change a job status to deleted in the database.
- deleteObject(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Delete an XML document in the repository.
- deleteObject(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
Delete an XML document in the repository.
- DeleteOnCloseFileInputStream - Class in edu.ucsb.nceas.metacat.util
-
Extension of FileInputSteam that deletes the sourcefile when the
InputStream is closed.
- DeleteOnCloseFileInputStream(String) - Constructor for class edu.ucsb.nceas.metacat.util.DeleteOnCloseFileInputStream
-
- DeleteOnCloseFileInputStream(File) - Constructor for class edu.ucsb.nceas.metacat.util.DeleteOnCloseFileInputStream
-
- deleteRelations(String) - Method in class edu.ucsb.nceas.metacat.RelationHandler
-
Deletes all of the relations with a docid of 'docid'.
- deleteReplica(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Delete the replica entry with the given nodeId for the given pid
- deleteReplica(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Delete the replica entry with the given nodeId for the given pid
- deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Deletes the replica from the given Member Node
NOTE: MN.delete() may be an "archive" operation.
- deleteReplicationMetadata(Identifier, NodeReference, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- deleteReplicationMetadata(Session, Identifier, NodeReference, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- deleteSystemMetadata(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
- deleteXMLAccessForDoc(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Delete xml access.
- deleteXMLAccessForDoc(String, String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Delete xml access.
- deleteXMLQueryresulForDoc(String) - Method in class edu.ucsb.nceas.metacat.XMLQueryresultAccess
-
Delete xml access.
- DELIMITER - Static variable in class edu.ucsb.nceas.metacat.util.AuthUtil
-
- dequoteText(String) - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Normalizes text prior to insertion into the HARVEST_LOG or
HARVEST_DETAIL_LOG tables.
- describe(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
This method provides a lighter weight mechanism than
getSystemMetadata() for a client to determine basic
properties of the referenced object.
- describe(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- describe(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- describe(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- describe(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- DESCRIPTIONS - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- destroy() - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterServlet
-
When the thread is destroyed, sets the Harvester.keepRunning flag to false.
- destroy() - Method in class edu.ucsb.nceas.metacat.harvesterClient.LoginServlet
-
- destroy() - Method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Close all db connections from the pool
- destroy() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServlet
-
- destroy() - Method in class edu.ucsb.nceas.metacat.restservice.D1URLFilter
-
- destroy() - Method in class edu.ucsb.nceas.metacat.spatial.SpatialHarvester
-
Closes the database connection.
- destroy() - Method in class edu.ucsb.nceas.metacat.spatial.WmsFilter
-
- discoverApplicationContext(ServletContext) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the context for this application.
- discoverDeployDir(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the deployment directory for this application.
- discoverExternalDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the external (to the metacat installation)
directory where metacat will hold backup files.
- discoverServerName(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the server name.
- discoverServerPort(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the server port.
- discoverServerSSLPort(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Attempt to discover the server ssl port.
- DistributionSection - Class in edu.ucsb.nceas.metacat
-
A Class that represents an XML access rule.
- DistributionSection(int) - Constructor for class edu.ucsb.nceas.metacat.DistributionSection
-
- doAdminAuthorization(Session) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Does MN/CN admin authorization
- doAuthoritativeMNAuthorization(Session, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Does local and AuthMN admin authorization
- doBypass() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Determine if the system is configured to bypass configuration.
- doBypass() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- doBypass() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Determine if the system is configured to bypass configuration.
- doBypass() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- docid - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- docid - Variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- docid - Variable in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- docid - Variable in class edu.ucsb.nceas.metacat.PathIndexEntry
-
- docId - Variable in class edu.ucsb.nceas.metacat.SubTree
-
- docname - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- DOCNAME - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- docname - Variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- docname - Variable in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- doCNOnlyAuthorization(Session) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Does only localNode(CN)/CN authorization
- doctype - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- doctype - Variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- doctype - Variable in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- docType - Variable in class edu.ucsb.nceas.metacat.PathIndexEntry
-
- Document() - Constructor for class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- DocumentCart - Class in edu.ucsb.nceas.metacat.cart
-
- DocumentCart() - Constructor for class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- DocumentIdentifier - Class in edu.ucsb.nceas.metacat
-
A class to parse document ids
The docid is of the form siteCode.uniqueId.rev
- DocumentIdentifier(String) - Constructor for class edu.ucsb.nceas.metacat.DocumentIdentifier
-
Constructor to build a docid object and parse an incoming string.
- DocumentIdQuery - Class in edu.ucsb.nceas.metacat
-
Generate a pathquery document representing a metacat query for a list of
document IDs.
- DocumentIdQuery() - Constructor for class edu.ucsb.nceas.metacat.DocumentIdQuery
-
- DocumentImpl - Class in edu.ucsb.nceas.metacat
-
A class that represents an XML document.
- DocumentImpl() - Constructor for class edu.ucsb.nceas.metacat.DocumentImpl
-
Default constructor
- DocumentImpl(String, boolean) - Constructor for class edu.ucsb.nceas.metacat.DocumentImpl
-
Constructor used to create a document and read the document information
from the database.
- DocumentImpl(String) - Constructor for class edu.ucsb.nceas.metacat.DocumentImpl
-
Constructor, creates document from database connection, used for reading
the document
- DocumentImpl(DBConnection, long, String, String, String, String, String, String, String, String, int, Date, Date) - Constructor for class edu.ucsb.nceas.metacat.DocumentImpl
-
Construct a new document instance, writing the contents to the database.
- DocumentImplWrapper - Class in edu.ucsb.nceas.metacat
-
This class a wrapper class for documentimpl for insert or update.
- DocumentImplWrapper(String, boolean, boolean) - Constructor for class edu.ucsb.nceas.metacat.DocumentImplWrapper
-
Constructor of DocumentImpleWrapper
- DocumentNotFoundException - Exception in edu.ucsb.nceas.metacat.client
-
Exception thrown when the requested docid does not exist on the server
- DocumentNotFoundException(String) - Constructor for exception edu.ucsb.nceas.metacat.client.DocumentNotFoundException
-
Create a new InsufficientKarmaException.
- DOCUMENTTABLE - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- DocumentUtil - Class in edu.ucsb.nceas.metacat.util
-
A suite of utility classes for the metadata catalog server
- DocumentUtil() - Constructor for class edu.ucsb.nceas.metacat.util.DocumentUtil
-
- doDelete(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Handle "DELETE" method requests from HTTP clients
- doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class edu.ucsb.nceas.metacat.restservice.D1URLFilter
-
- doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class edu.ucsb.nceas.metacat.spatial.WmsFilter
-
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.MetacatAdminServlet
-
Handle "GET" method requests from HTTP clients
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterRegistration
-
Handles GET method requests.
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterRegistrationLogin
-
Handle "GET" method requests from HTTP clients
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.LoginServlet
-
Handle "GET" method requests from HTTP clients
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Handle "GET" method requests from HTTP clients
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Peform the http GET action.
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServlet
-
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Handle "GET" method requests from HTTP clients
- doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.spatial.SldFactory
-
Handle "GET" method requests from HTTP clients
- doGetSysmetaAuthorization(Session, SystemMetadata, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
used by getSystemMetadata, describe, and getPackage, the latter two by delegation to getSystemMetadata
Very similar to doIsAuthorized, but also allows replica nodes administrative access.
- doHead(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Handle "PUT" method requests from HTTP clients
- DOI - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- DOI_SCHEME - Static variable in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- doIsAuthorized(Session, SystemMetadata, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Performs all authorization steps used by isAuthorized.
- DOIService - Class in edu.ucsb.nceas.metacat.dataone
-
Singleton for interacting with the EZID DOI library.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.admin.MetacatAdminServlet
-
Handle "POST" method requests from HTTP clients
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchServlet
-
Executes an advanced search.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.advancedsearch.BrowseServlet
-
Executes a browse-based simple search.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginServlet
-
Executes a metacat login action.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.advancedsearch.SearchServlet
-
Executes a simple search.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterRegistration
-
Handles POST method requests.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterRegistrationLogin
-
Handle "POST" method requests from HTTP clients
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.LoginServlet
-
Handle "POST" method requests from HTTP clients
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.harvesterClient.MetUpload
-
Handle POST requests made to the Harvester MetUpload servlet.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Handle "POST" method requests from HTTP clients
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Perform a POST action.
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServlet
-
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Handle "POST" method requests from HTTP clients
- doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.spatial.SldFactory
-
Handle "POST" method requests from HTTP clients
- doPut(HttpServletRequest, HttpServletResponse) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Handle "PUT" method requests from HTTP clients
- doRefresh() - Method in class edu.ucsb.nceas.metacat.database.DatabaseService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Refresh the Hazelcast service by restarting it
- doRefresh() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.service.SessionService
-
- doRefresh() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
refresh the persistant values in this service.
- doRefresh() - Method in class edu.ucsb.nceas.metacat.shared.BaseService
-
- doTransform(StreamSource, StreamResult, String, Hashtable<String, String[]>, String, String) - Method in class edu.ucsb.nceas.metacat.DBTransform
-
Reads skin's config file if it exists, and populates Transformer paramaters
with its contents.
- doUpdateAuth(Session, SystemMetadata, Permission, NodeReference) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
The locus of updates is limited to the authoritativeMN.
- DOWNLOAD_ACTION - Static variable in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- DTD - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- dueForHarvest() - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestSiteSchedule
-
Boolean to determine whether this site is currently due for its next
harvest.
- geItsDataSetIdWithouAccessEntry() - Method in class edu.ucsb.nceas.metacat.AssociateAccessPolicy
-
Get the docid which it's mapped dataset doesn't has access entry
- GENERAL_UTILITY_ERROR - Static variable in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- generateAnnotation(Identifier) - Method in class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
Generate annotation for given metadata identifier
- generateDocumentId(int) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Create a unique docid for use in inserts and updates using the default
prefix from the document.accNumPrefix property.
- generateDocumentId(String, int) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Create a unique docid for use in inserts and updates using the prefix
that is provided.
- generateDOI() - Method in class edu.ucsb.nceas.metacat.dataone.DOIService
-
Generate a DOI using the EZID service as configured
- GenerateGlobalIdentifiers - Class in edu.ucsb.nceas.metacat.admin.upgrade
-
Optionally upgrade all of the existing identifiers in the tables to be official
DOIs that are assigned by a DOI registration authority.
- GenerateGlobalIdentifiers() - Constructor for class edu.ucsb.nceas.metacat.admin.upgrade.GenerateGlobalIdentifiers
-
- generateIdentifier(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
- generateIdentifier(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- generateIdentifier(String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- generateIdentifier(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- generateIdentifier(String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- generateIdentifier(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- generateLocalId(String, int) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
- generateLocalId(String, int, boolean) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Given a global identifier (guid), create a suitable local identifier that
follows Metacat's docid semantics and format (scope.id.rev), and create
a mapping between these two identifiers.
- generateMetadata(Identifier, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
Method to generate the datacite meta data xml string for an object with the given system meta data.
- generateMetadata(Identifier, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.doi.datacite.DefaultDataCiteFactory
-
Method to generate the data cite xml document
- generateMetadata(Identifier, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.doi.datacite.EML2DataCiteFactory
-
Method to generate the data cite xml document
- GenerateORE - Class in edu.ucsb.nceas.metacat.admin.upgrade.dataone
-
- GenerateORE() - Constructor for class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateORE
-
- generateROOTDoc() - Method in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
Generate the blank DOM document for the datacite name space
- generateSitemaps() - Method in class edu.ucsb.nceas.metacat.Sitemap
-
Generate all of the sitemap files needed to list the URLs from this
instance of Metacat, using the open sitemap format described here:
http://www.sitemaps.org/protocol.html
URLs are written to a single file, unless the maximum number of URLs
allowed in the sitemap file is exceeded, in which subsequent numbered
files are created.
- GenerateSystemMetadata - Class in edu.ucsb.nceas.metacat.admin.upgrade.dataone
-
- GenerateSystemMetadata() - Constructor for class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateSystemMetadata
-
- generateSystemMetadata(List<String>, boolean, boolean) - Static method in class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
Generate SystemMetadata for any object in the object store that does
not already have it.
- GeoserverAdmin - Class in edu.ucsb.nceas.metacat.admin
-
Control the display of the database configuration page and the processing
of the configuration values.
- GeoserverUtil - Class in edu.ucsb.nceas.metacat.util
-
- GET - Static variable in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
HTTP Verb GET
- get(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Return the object identified by the given object identifier
- get(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Return the object identified by the given object identifier
- get(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- get(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- get(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- get(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- get(Identifier) - Method in class edu.ucsb.nceas.metacat.index.IndexEventDAO
-
- GET - Static variable in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
HTTP Verb GET
- get(String, Hashtable<String, String[]>) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
- GET_SCHEDULED_WORKFLOW_ERROR - Static variable in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- getAbouts(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Get the about elements from the item
- getAccessControl(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
- getAccessControl(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
get the access control info for a given document id.
- getAccessFileIDWithRevision(String) - Static method in class edu.ucsb.nceas.metacat.RelationHandler
-
Get the access file id for a package
- getAccessionNumberFromEcogridIdentifier(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Eocgorid identifier will look like: ecogrid://knb/tao.1.1
The AccessionNumber tao.1.1 will be returned.
- getAccessPolicy(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Lookup access policy from Metacat
- getAccessQuery() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Method to append a access control query to SQL.
- getAccessRules() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get all access rule
- getAccessSection() - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
- getAccessString() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Get the access xml for all access on this docid
- getAccessString(Vector<XMLAccessDAO>) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Put together an xml representation of the objects in a given access dao list
- getACL(String, String[]) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Get Access Control List information for document from db connetion.
- getAction() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property action.
- getAction() - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- getAdministrators() - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Get the administrators from metacat.properties
- getAge() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion age from the object
- getAllDocids(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
return a list of all docids that match a given scope.
- getAllDocids(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
return a list of all docids that match a given scope.
- getAllDocids(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
return a list of all docids that match a given scope.
- getAllDocids(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
return a list of all docids that match a given scope.
- getAllDocids(String) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
get the latest Accession Number from a particular scope
- getAllDocidsByType(String, boolean) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
return all docids with a given doctype on all servers
- getAllDocidsByType(String, boolean, int) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
return all docids with a given doctype for a given server
- getAllIdentifiers() - Method in class edu.ucsb.nceas.metacat.index.IndexEventDAO
-
- getAllJobParams() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getAllJobParams() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamAccess
-
Get all job parameters
- getAllJobs(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Get all jobs for a given group.
- getAllLocalIds() - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
return a listing of all local ids in the object store
- getAllOREpids(String) - Static method in class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateORE
-
Retrieves a list of all ORE objects on the given MN
- getAllowedSubmitters() - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Get the allowed submitters from metacat.properties
- getAllSystemMetadataGUIDs() - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
return a listing of all guids in the object store
- getAnyfield() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property anyField.
- getAttribute(String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get an attribute value by name
- getAttributeName(String) - Static method in class edu.ucsb.nceas.metacat.QuerySpecification
-
A method to get attribute name from path
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getAttributes(String, String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getAttributes(String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get attributes describing a user or group
- getAttributes(String, String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get attributes describing a user or group
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get attributes describing a user or group
- getAttributes(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get attributes describing a user or group
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.AuthSession
-
Get attributes describing a user or group
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get attributes describing a user or group
- getAttributes(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get attributes describing a user or group
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get attributes describing a user or group
- getAttributes(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get attributes describing a user or group
- getAttributes() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the attributes as a string
- getAttributes(Properties) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
- getAttributes(String) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
- getAuthBackupProperties() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get the auth backup properties file.
- getAuthBackupProperties() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getAuthBackupProperties() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the auth backup properties file.
- getAuthBackupProperties() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- getAuthMetaData() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get the auth properties metadata.
- getAuthMetaData() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getAuthMetaData() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the auth properties metadata.
- getAuthMetaData() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- getBackupDirStatus(String) - Method in class edu.ucsb.nceas.metacat.admin.BackupAdmin
-
Find the status of the backup base directory.
- getBackupProperties() - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main backup properties file.
- getBackupProperties(String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main backup properties file.
- getBaseUrlFromSchemaURL(String) - Static method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Get a base url from the schema url.
- getBeanDescriptor() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
Gets the bean's BeanDescriptors.
- getBytes() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getCapabilities() - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
- getCapabilities() - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Return a description of the node's capabilities and services.
- getCapabilities() - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getCatalogId() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- getCatalogVect() - Method in class edu.ucsb.nceas.metacat.CatalogMessageHandler
-
- getCatalogXML() - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Returns the xml_catalog table encoded in xml
- getCGI_URL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the CGI URL which is made up of the server URL + file separator + the
CGI directory
- getCheckOutMethodName() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the the name of method checked out the connection from the object
- getCheckOutSerialNumber() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the check out serial number
- getCheckOutTime() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the when a db connetion was checked out
- getChecksum(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Return the checksum of the object given the identifier
- getChecksum(Session, Identifier, String) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Returns a Checksum for the specified object using an accepted hashing algorithm
- getChecksum(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- getChecksum(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- getChecksum(Identifier, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getChecksum(Session, Identifier, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- getChildren() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the an enumeration of the children of this node
- getClassName() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getCNNodeList() - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
A centralized point for accessing the CN Nodelist,
to make it easier to cache the nodelist in the future,
if it's seen as helpful performance-wise
- getCNNodeList() - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
A centralized point for accessing the CN Nodelist,
to make it easier to cache the nodelist in the future,
if it's seen as helpful performance-wise
- getCodeLevelValue(String) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestLog
-
Maps each code level to an integer value.
- getConnection() - Method in class edu.ucsb.nceas.metacat.dataquery.PostgresDatabaseConnectionPool
-
Gets a database connection from the pool
- getConnection() - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Returns a connection to the database.
- getConnection() - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
Returns a connection to the database.
- getConnections() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the connetion from the object
- getConnectionTime() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the how long db connetion used for the object
- getContentStandard() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property contentStandard.
- getContentType() - Method in class edu.ucsb.nceas.metacat.ContentTypeProvider
-
Method to get content type
- getContentType() - Method in class edu.ucsb.nceas.metacat.restservice.InputStreamDataSource
-
- getContentWithoutSystemMetadata(String) - Static method in class edu.ucsb.nceas.metacat.util.ReplicationUtil
-
return the string WITHOUT the contents between start and end tag
- getContextDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the context directory.
- getContextURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the server URL with the context.
- getControlLevel() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get controllevel
- getCookie(HttpServletRequest, String) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Get a cookie from a request by the cookie name
- getCoreMessage() - Method in exception edu.ucsb.nceas.metacat.shared.BaseException
-
- getCreateDate() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the creation date
- getCreateTime() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion created time from the object
- getCreationTime() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getCreatorOrganization() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getCreatorOrganizationQueryType() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getCreatorSurname() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getCreatorSurnameQueryType() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getCurrentNodeId() - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- getCurrentRevisionAndDocTypeForGivenDocument(String) - Method in class edu.ucsb.nceas.metacat.DBUtil
-
Method to get current revision and doctype for a given docid
The output will look like "rev;doctype"
- getD1Report(String[], String[], String[], String, Timestamp, Timestamp, boolean, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.EventLog
-
- getData(LSIDRequestContext) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityData
-
- getDatabaseConnectionPoolInterface() - Static method in class edu.ucsb.nceas.metacat.dataquery.MetacatDatabaseConnectionPoolFactory
-
- getDataByRange(LSIDRequestContext, int, int) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityData
-
- getDataFileLockGrant(String) - Static method in class edu.ucsb.nceas.metacat.DocumentImpl
-
Get a lock for a given document.
- getDataFileLockGrant(String, int) - Static method in class edu.ucsb.nceas.metacat.DocumentImpl
-
The method will check if metacat can get data file lock grant If server
code is 1, it get.
- getDataFileName() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get the dataFileName
- getDataFileName(int) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Indexed getter for property dataFileNames.
- getDataFileName() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property dataFileNames.
- getDataFileName() - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Get the online data file name
- getDataLocations(LSID, String) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMain
-
- getDataReplication() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Get datareplication xml or not option
- getDataReplicationValue(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
To a given server name, try to get its data file replciation option
If couldn't find the server in the server list, false will return
- getDateField() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getDatestamp(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
get the datestamp from the item
- getDateTimeFunction() - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
The function name that gets the current date and time
from the database server
- getDateTimeFunction() - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
The Oracle's function name that gets the current date and time
from the database server: "sysdate"
- getDateTimeFunction() - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
The PostgreSQL function name that gets the current date
and time from the database server
- getDateTimeFunction() - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
The SQL Server's function name that gets the current date and time
from the database server: "getdate()"
- getDBAdapter() - Method in class edu.ucsb.nceas.metacat.database.DatabaseService
-
gets the database adapter
- getDBAdapterName() - Method in class edu.ucsb.nceas.metacat.dataquery.PostgresDatabaseConnectionPool
-
Get dabase adpater name.
- getDBConnection(String) - Static method in class edu.ucsb.nceas.metacat.database.DBConnectionPool
-
Method to get a DBConnection in connection pool
1) try to get a DBConnection from DBConnection pool
2) if 1) failed, then check the size of pool.
- getDBStatus() - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Performs a status check on the database.
- getDBVersion() - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Get the version of the database as a string
- getDefaultEventIndex() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
A bean may have a "default" event that is the event that will
mostly commonly be used by human's when using the bean.
- getDefaultPropertyIndex() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
A bean may have a "default" property that is the property that will
mostly commonly be initially chosen for update by human's who are
customizing the bean.
- getDefaultQueryParams() - Static method in class edu.ucsb.nceas.metacat.DocumentIdQuery
-
Create a paramter list containing default parameters for a query
- getDefaultReplicationPolicy() - Static method in class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
Create a default ReplicationPolicy by reading properties from metacat's configuration
and using those defaults.
- getDefaultStyleURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the default style URL from metacat.properties.
- getDeletesVect() - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
- getDeniedSubmitters() - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Get the denied submitters from metacat.properties
- getDescribedIdList() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get a described id list
- getDeserializer(String, Class, QName) - Static method in class edu.ucsb.nceas.shared.xsd.FileNotFoundException
-
Get Custom Deserializer
- getDeserializer(String, Class, QName) - Static method in class edu.ucsb.nceas.shared.xsd.IOException
-
Get Custom Deserializer
- getDetailLogID() - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Gets the current value of the detailLogID for storage as a primary key in
the DETAIL_LOG_ID field of the HARVEST_DETAIL_LOG table.
- getDistributionId() - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Get the access type
- getDistributionType() - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Get the access type
- getDocHomeServer() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getDocid() - Method in class edu.ucsb.nceas.metacat.AccessionNumber
-
returns the docid encoded in this accession number
- getDocID() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the doc id of this node
- getDocId() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property docId.
- getDocID() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
Get the document identifier (docid)
- getDocid() - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- getDocid() - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Get the current value of the document identifier.
- getDocId() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get the docId
- getDocIdFromAccessionNumber(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
This method will get docid from an AccessionNumber.
- getDocIdFromInlineDataID(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Method to get docidwithrev from eml2 inline data id The eml inline data
id would look like eml.200.2.3
- getDocIdFromString(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Utility method to get docid from a given string
- getDocids() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- getDocIdWithoutRevsion() - Method in class edu.ucsb.nceas.metacat.RemoteDocument
-
Method to get docidWithout revision
- getDocIdWithRevFromOnlineURL(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Get docid from online/url string
- getDocname() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
Get the document name.
- getDocname() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
get the document name
- getDocname() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the document name
- getDoctype() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the document type (which is the PublicID)
- getDoctype() - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- getDocType(LSID) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDDataLookup
-
- getDocType() - Method in class edu.ucsb.nceas.metacat.RemoteDocument
-
Method to get docType
- getDocument() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get the OAI response as a DOM object
- getDocumentCart() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getDocumentInfo(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Gets a docInfo XML snippet for the replication API
- getDocumentInfoMap(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
- getDocumentName() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- getDocuments() - Method in class edu.ucsb.nceas.metacat.MetacatResultSet
-
- getDocumentType() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- getDownloadNewSchema() - Method in class edu.ucsb.nceas.metacat.SchemaLocationResolver
-
Gets the downloadNewSchema's value.
- getEastBound() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getEncoding() - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Returns the character encoding used used when communicating with Metacat.
- getEncoding() - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
- getEncoding() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- getEndDate() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getEndNodeId() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get end node id
- getEndTime() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getErrors() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get the OAI errors
- getEvent() - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Get the current value of the event.
- getEventSetDescriptors() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
Gets the bean's EventSetDescriptors.
- getException() - Method in exception edu.ucsb.nceas.metacat.McdbException
-
Get the tunneled Exception
- getExplanation(String) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestLog
-
Returns an explanation string based on the value of a
harvestOperationCode string.
- getExternalFileUri() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Gets the external file uri
- getField(String) - Method in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- getFields(String) - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- getFields() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- getFile() - Method in class edu.ucsb.nceas.metacat.util.DeleteOnCloseFileInputStream
-
Allow access to the underlying file - careful!
- getFileName() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Gets the file name
- getFileNamespace() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Gets the file namespace
- getFilterDocList() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return a vector of the filter doc types as defined in
the <filterdoctype> tag in the pathquery dtd.
- getFormAllAny() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getFormat(ObjectFormatIdentifier) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Returns the object format registered in the DataONE Object Format
Vocabulary for the given format identifier
- getFormat(ObjectFormatIdentifier) - Method in class edu.ucsb.nceas.metacat.dataone.ObjectFormatService
-
Return the object format based on the given object format identifier
- getFormat(ObjectFormatIdentifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- getFormatId() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Get the format id
- getGeoserverContextURL() - Static method in class edu.ucsb.nceas.metacat.util.GeoserverUtil
-
Get the server URL with the Geoserver context.
- getGroupName() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getGroupNames(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Gets the user group names from the login session on the http request
- getGroupNames() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getGroups(String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getGroups(String, String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getGroups(String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get all groups from the authentication service
- getGroups(String, String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get the groups for a particular user from the authentication service
- getGroups(String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get all groups from the authentication service
- getGroups(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get the groups for a particular user from the authentication service
- getGroups(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthSession
-
Get the all groups in which the given userDN is
- getGroups(String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get all groups from the authentication service
- getGroups(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get the groups for a particular user from the authentication service
- getGroups(String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get all groups from the authentication service
- getGroups(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get the groups for a particular user from the authentication service
- getGroups() - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- getGUID(String, int) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
given a local identifer, look up the guid.
- getGUIDs(String, String, String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Get the list of identifiers which system metadata matches the given format id and original member node id and guid or series id start with the scheme (doi for example).
- getHandler(String) - Method in class edu.ucsb.nceas.metacat.plugin.MetacatHandlerPluginManager
-
- getHarvestLogID() - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Gets the current value of the harvestLogID for storage as a primary key in
the HARVEST_LOG_ID field of the HARVEST_LOG table.
- getHarvestOperationCodeLevel(String) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestLog
-
Returns a code level string based on a harvestOperationCode string.
- getHashParam(String) - Method in class edu.ucsb.nceas.metacat.MetacatURL
-
returns a single parameter from the hash by name
- getHashParams() - Method in class edu.ucsb.nceas.metacat.MetacatURL
-
Returns the parameters in a hashtable.
- getHazelcastInstance() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
- getHeadPID(Identifier) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Get the pid of the head (current) version of objects match the specified sid.
- getHomeServerCodeForDocId(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Returns a home server location given a accnum
- getHomeServerInfoForDocId(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Method to get a host server information for given docid
- getHub() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Get hub option
- getHubValue(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
To a given server name, try to get its hub option
If couldn't find the server in the server list, false will return
- getId() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getIdentifier() - Method in class edu.ucsb.nceas.metacat.DocumentIdentifier
-
returns
- getIdentifier() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.GetRecord
-
Get the oai:identifier from the oai:header
- getIdentifier() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return the identifier of this Query
- getIdentifiers() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Get the identifiers set
- getIncludedSchemaFilePathes() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaParser
-
Get the included schema file paths in this schema
- getIndexEventMap() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Get the index event map
- getIndexFields(Identifier, String) - Method in class edu.ucsb.nceas.metacat.EventLog
-
- getIndexQueue() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Get the index queue
- getInlineDataIdWithoutRev(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
This method will get inline data id without the revision number.
- getInputStream() - Method in class edu.ucsb.nceas.metacat.restservice.InputStreamDataSource
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.AuthAdmin
-
Get the single instance of the MetaCatConfig.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.BackupAdmin
-
Get the single instance of BackupAdmin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.D1Admin
-
Get the single instance of D1Admin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Get the single instance of DBAdmin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.EZIDAdmin
-
Get the single instance of EZIDAdmin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.GeoserverAdmin
-
Get the single instance of GeoserverAdmin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.LoginAdmin
-
Get the single instance of LoginAdmin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.PropertiesAdmin
-
Get the single instance of the MetaCatConfig.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.ReplicationAdmin
-
Get the single instance of D1Admin.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.admin.SkinsAdmin
-
Get the single instance of the MetaCatConfig.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.ArchiveHandler
-
Get the single instance of SessionService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.database.DatabaseService
-
Get the single instance of DatabaseService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.database.DBConnectionPool
-
Returns the single instance, creating one if it's the
first time this method is called.
- getInstance(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
singleton accessor
- getInstance() - Static method in class edu.ucsb.nceas.metacat.dataone.DOIService
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Get the instance of the HazelcastService that has been instantiated,
or instantiate one if it has not been already.
- getInstance(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Singleton accessor to get an instance of MNodeService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.dataone.ObjectFormatService
-
- getInstance(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
singleton accessor
- getInstance(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Singleton accessor to get an instance of MNodeService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.event.MetacatEventService
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.EventLog
-
Return the single instance of the event log after initializing it if it
wasn't previously initialized.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Return the single instance of the manager after initializing it if it
wasn't previously initialized.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.index.IndexEventDAO
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.index.MetacatSolrEngineDescriptionHandler
-
Get an instance of the class.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.index.MetacatSolrIndex
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.IndexingQueue
-
- getInstance() - Static method in class edu.ucsb.nceas.metacat.MetacatProfiler
-
get a singleton instance
- getInstance() - Static method in class edu.ucsb.nceas.metacat.plugin.MetacatHandlerPluginManager
-
- getInstance(ServletContext) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the single instance of PropertyService.
- getInstance(String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the single instance of PropertyService for test purposes.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the single instance of PropertyService for test purposes.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the single instance of SkinPropertyService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Get the single instance of SessionService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Get the single instance of SchedulerService.
- getInstance(ServletContext) - Static method in class edu.ucsb.nceas.metacat.service.ServiceService
-
Get the single instance of ServiceService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.service.SessionService
-
Get the single instance of SessionService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Get the single instance of XMLService.
- getInstance() - Static method in class edu.ucsb.nceas.metacat.workflow.WorkflowSchedulerClient
-
Get the single instance of SchedulerService.
- getInternalContextURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the internal context url.
- getInternalServerURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the internal server URL.
- getIntervalUnit() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getIntervalValue() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getIpAddress() - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Get the current value of the internet protocol address.
- getIsNULLFunction() - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
The function name that is used to return non-NULL value
- getIsNULLFunction() - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
The Oracle's function name that is used to return non-NULL value
- getIsNULLFunction() - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
The PostgreSQL function name that is used to return non-NULL value
- getIsNULLFunction() - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
The SQL Server's function name that is used to return non-NULL value
- getIsRevisionDoc() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
get the the is revision doc
- getJob(Long) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Get a job based on it's id
- getJobByName(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Get a job by it's name
- getJobId() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- getJobInfoXML(Long) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Get information about the job in XML format
- getJobParam(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getJobParamsForJobId(Long) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamAccess
-
Get all the job parameters for a given job id
- getJobs(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>, String, String[]) - Method in class edu.ucsb.nceas.metacat.scheduler.BaseScheduler
-
- getJobs(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>, String, String[]) - Method in class edu.ucsb.nceas.metacat.workflow.WorkflowSchedulerClient
-
get job information for a given workflow in xml format
- getJobsInfoXML(String, String, String) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Get the information for jobs in a group in an xml format.
- getJobsInfoXML(String, String, String, PrintWriter) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Get the information for jobs in a group in an xml format.
- getJobsWithParameter(String, String, String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
Get all jobs that have a given parameter with a given value
- getKey() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- getKnownURIs() - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMain
-
- getLabels() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- getLastAccessedTime() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getLastCheckedDate() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Get last checked date
- getLastCheckedDate(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
To a given server name, try to get its lastcheck date.
- getLastDocid(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Return the highest document id for a given scope.
- getLastDocid(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Return the highest document id for a given scope.
- getLastModifiedDate() - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
returns a list of system metadata-only guids since the given date
- getLatestRevForLocalId(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
return the newest rev for a given localId
- getLatestRevisionInDocumentTable(String) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
Get last revision number from database for a docid If couldn't find an
entry, -1 will return The return value is integer because we want compare
it to there new one
- getLeftJoinQuery(String, String, String, String, String) - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
Syntax for doing a left join
Add 'a.' in front of the fields for first table and
'b.' in front of the fields for the second table
- getLeftJoinQuery(String, String, String, String, String) - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
The Oracles's syntax for doing a left join
Add 'a.' in front of the fields for first table and
'b.' in front of the fields for the second table
- getLeftJoinQuery(String, String, String, String, String) - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
PostgreSQL's syntax for doing a left join
Add 'a.' in front of the fields for first table and
'b.' in front of the fields for the second table
- getLeftJoinQuery(String, String, String, String, String) - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
MSSQL's syntax for doing a left join
Add 'a.' in front of the fields for first table and
'b.' in front of the fields for the second table
- getLocalFileDir() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Gets the local file directory path
- getLocalFileUri() - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Gets the local file uri
- getLocalId(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Lookup a localId given the GUID.
- getLocalIdentifier(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Extract the local identifier from the native item
- getLocalIdsWithNoSystemMetadata(boolean, int) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
return all local ids in the object store that do not have associated
system metadata
- getLocalReplicationServerName() - Static method in class edu.ucsb.nceas.metacat.util.MetacatUtil
-
Method to get the name of local replication server
- getLocationName() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getLock(String) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
- getloggedinuserinfo() - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Get the logged in user for this session.
- getloggedinuserinfo() - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Method used to log in to a metacat server.
- getLogRecords(Session, Date, Date, String, String, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Return the log records associated with a given event between the start and
end dates listed given a particular Subject listed in the Session
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- getLSID(XSLProcessorContext, ElemExtensionCall) - Static method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMetaData
-
get the current LSID for the given thread, for use in XSLT so return a
string
- getLSID() - Static method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMetaData
-
- getMainBackupProperties() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get the main backup properties file.
- getMainBackupProperties() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getMainBackupProperties() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the main backup properties file.
- getMainBackupProperties() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- getMainMetaData() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get the main properties metadata.
- getMainMetaData() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getMainMetaData() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get the main properties metadata.
- getMainMetaData() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- getMaxDateUpdated() - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
Get the most recent date that the xml_documents table was updated
- getMaxDocid(String) - Method in class edu.ucsb.nceas.metacat.DBUtil
-
get the latest Accession Number from a particular scope
- getMaxRevFromRevisionTable(String) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
Method to return max rev number in xml_revision for given docid.
- getMessage() - Method in class edu.ucsb.nceas.metacat.AuthSession
-
Get the message associated with authenticating this session.
- getMessage(int) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Indexed getter for property message.
- getMessage() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property message.
- getMessage() - Method in exception edu.ucsb.nceas.metacat.McdbException
-
Get the message from this exception.
- getMetacatAuthenticatedEcogridEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatAuthenticatedEcogridEndPoint
-
Gets the end point which Metacat implements authenticated ecogrid interface.
- getMetacatClient(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
JSP API: This is a convenience method to reduce the amount of code in a Metacat Client
JSP.
- getMetacatClient() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getMetacatEcogridAuthEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
- getMetacatEcogridEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
Gets the end point which Metacat implements ecogrid interface.
- getMetacatEcogridIdentifierEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
- getMetacatEcogridPutEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
- getMetacatReleaseInfo() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Gets a string that holds some description about the release.
- getMetacatRunning() - Method in class edu.ucsb.nceas.metacat.IndexingQueue
-
- getMetacatVersion() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the metacat version by getting the string representation from
metacat.properties and instantiating a MetacatVersion object.
- getMetaData() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Method to get meta data
- getMetadata(LSIDRequestContext, String[]) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMetaData
-
- getMetaData() - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main properties metadata.
- getMetaData(String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main properties metadata.
- getMetadataDoc() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getMetadataLocations(LSID, String) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMain
-
- getMetaFileDocId() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property isMetaFileDocId.
- getMetaFileName() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property metaFileName.
- getMethodDescriptors() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
Gets the bean's MethodDescriptors.
- getModerators() - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Get the moderators from metacat.properties
- getName() - Method in class edu.ucsb.nceas.metacat.restservice.InputStreamDataSource
-
- getName() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getName() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getNamedTimescale() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getNamedTimescaleQueryType() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getNamespace(String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get an uri of the namespace prefix
- getNamespace() - Method in class edu.ucsb.nceas.metacat.service.XMLNamespaceParser
-
Get the namespace of the document (root element).
- getNameSpaceAndLocation(String) - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Get the all schema-location pairs registered for the formatId.
- getNameSpaceAndLocationStringWithoutFormatId() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Gets the name space and location string.
- getNameSpaceList() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Gets a list of name spaces.
- getNewestDocRevision(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
The method will return the latest revision in metacat server
for a given document id.
- getNewestDocRevision(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
The method will return the latest revision in metacat server
for a given document id.
- getNext() - Method in class edu.ucsb.nceas.metacat.IndexingQueue
-
- getNextObject(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Return the highest document id for a given scope.
- getNextObject(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
Return the highest document id for a given scope.
- getNextRevision(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
The method will return the latest revision in metacat server
for a given document id.
- getNextRevision(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
The method will return the latest revision in metacat server
for a given document id.
- getNode(XPath, String, Node) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getNodeData() - Method in class edu.ucsb.nceas.metacat.CommentNode
-
Get the node data as a string value
- getNodeData() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodeData() - Method in class edu.ucsb.nceas.metacat.PINode
-
Get the node data as a string value
- getNodeData() - Method in class edu.ucsb.nceas.metacat.TextNode
-
Get the node data as a string value
- getNodeDataDate() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodeDataNumerical() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodeID() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the id of this node
- getNodeId() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
Get functions
- getNodeIndex() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get nodeIndex of the node
- getNodeIndex() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodeList(String) - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get a NodeList containing the nodes in the response DOM for the specified
xpath
- getNodeName() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodePrefix() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNodeText(XPath, String, Node) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getNodeTextList(XPath, String, Node) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getNodeTextStack(XPath, String, Node) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getNodeType() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the type of this node
- getNodeType() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getNoNamespaceSchemaLocation() - Method in class edu.ucsb.nceas.metacat.service.XMLNamespaceParser
-
Get the value of noNamespaceSchemaLocation of the document (root element).
- getNoNamespaceSchemaLocation() - Method in class edu.ucsb.nceas.metacat.service.XMLNoNamespaceSchema
-
Get the no-namespace-schemal-location uri
- getNormalizedXMLQuery() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Gets normailized query string in xml format, which can be transformed
to html
- getNorthBound() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getNotFoundDataSetId() - Method in class edu.ucsb.nceas.metacat.AssociateAccessPolicy
-
Get the docid which didn't found a dataset id to map it
- getOAIIdentifier(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Construct an OAI identifier from the native item
- getOAIIdentifierOld(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Construct an OAI identifier from the native item
- getObject(String, String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Read a public XML document , accessed by docid, and returned as a Reader.
- getObject(String, String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
Read a public XML document , accessed by docid, and returned as a Reader.
- getObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Implements REST version of DataONE CRUD API --> get
- getObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNResourceHandler
-
Implements REST version of DataONE CRUD API --> get
- getObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Implements REST version of DataONE CRUD API --> get
- getObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNResourceHandler
-
Implements REST version of DataONE CRUD API --> get
- getObjectFilePath(String, boolean) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Get the the file path for the given object local id
- getOperator() - Method in class edu.ucsb.nceas.metacat.DBQuery
-
- getOptionList(String) - Static method in class edu.ucsb.nceas.metacat.util.MetacatUtil
-
- getOrganization() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- getOrganization() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property organization.
- getOrganizations() - Static method in class edu.ucsb.nceas.metacat.util.OrganizationUtil
-
gets a list of organization names from metacat.properties.
- getOrgDNs(String) - Static method in class edu.ucsb.nceas.metacat.util.OrganizationUtil
-
gets a list of organization names from metacat.properties.
- getOsClass() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the OS for this system.
- getOutputStream() - Method in class edu.ucsb.nceas.metacat.restservice.InputStreamDataSource
-
- getOwnerList() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return a vector of the owner fields as defined in the
<owner> tag in the pathquery dtd.
- getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- getPackage(Session, ObjectFormatIdentifier, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getPackage(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNResourceHandler
-
Retrieve data package as Bagit zip
- getPackage(String, String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNResourceHandler
-
Retrieve data package as Bagit zip
- getPackageId() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
For a given site, return the packageId attribute search string for that
site's EML documents.
- getPagedQuery(String, Integer, Integer) - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
for generating a query for paging
- getPagedQuery(String, Integer, Integer) - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
- getPagedQuery(String, Integer, Integer) - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
- getPagedQuery(String, Integer, Integer) - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
- getParam(int) - Method in class edu.ucsb.nceas.metacat.MetacatURL
-
Returns a single parameter and value as a 1D string array.
- getParameters(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Get a cookie from a request by the cookie name
- getParams() - Method in class edu.ucsb.nceas.metacat.MetacatURL
-
Returns the parameters as a 2D string array.
- getParentID() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the parent id of this node
- getParentNode() - Method in class edu.ucsb.nceas.metacat.DBSAXNode
-
get the parent of this node
- getParentNodeId() - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- getPassword() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- getPassword() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property password.
- getPassword() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getPathContent(File, String) - Static method in class edu.ucsb.nceas.metacat.DBTransform
-
gets the content of a tag in a given xml file with the given path
- getPathExpr() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property pathExpr.
- getPathExpression() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
get the path expression parameter
- getPathInfo() - Method in class edu.ucsb.nceas.metacat.restservice.D1HttpRequest
-
override getPathInfo to handle special characters
- getPaths() - Method in class edu.ucsb.nceas.metacat.cart.DocumentCart
-
- getPathsForIndexing() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get a list of xml paths that need to be indexed
- getPathValue() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property pathValue.
- getPercentageSymbolCount() - Method in class edu.ucsb.nceas.metacat.QueryGroup
-
- getPercentageSymbolCount() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
get the percentage count for one query term
- getPermission() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
Get permission
- getPermissionOrder() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get permissionOrder
- getPermissionType() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
- getPIDForSID(Identifier, String) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Utility method to get the PID for an SID.
- getPointFeature() - Method in class edu.ucsb.nceas.metacat.spatial.SpatialDocument
-
Returns a geotools (multi)point feature with geometry plus attributes
ready to be inserted into our spatial dataset cache
- getPointFeatureType() - Static method in class edu.ucsb.nceas.metacat.spatial.SpatialFeatureSchema
-
Creates the featuretype schema for point centroids
- getPolygonFeature() - Method in class edu.ucsb.nceas.metacat.spatial.SpatialDocument
-
Returns a geotools (multi)polygon feature with geometry plus attributes
ready to be inserted into our spatial dataset cache
- getPolygonFeatureType() - Static method in class edu.ucsb.nceas.metacat.spatial.SpatialFeatureSchema
-
Creates the featuretype schema for polygon bounds
- getPrincipal() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
Get the principle vector
- getPrincipal() - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Get the current value of the principal.
- getPrincipals(String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getPrincipals(String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get all groups and users from authentication service.
- getPrincipals(String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get all groups and users from authentication scheme.
- getPrincipals(String, String) - Method in class edu.ucsb.nceas.metacat.AuthSession
-
Get all groups and users from authentication scheme.
- getPrincipals(String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get all groups and users from authentication scheme.
- getPrincipals(String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get all groups and users from authentication scheme.
- getProfiles() - Method in class edu.ucsb.nceas.metacat.MetacatProfiler
-
return a hashtable of the profiles
- getProperties() - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main backup properties file.
- getProperties(String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get the main backup properties file.
- getPropertiesByGroup(String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get a Map of all properties that start with the groupName prefix.
- getPropertiesByGroup(String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getPropertiesByGroup(String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get a Map of all properties that start with the groupName prefix.
- getPropertiesByGroup(String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Get a Map of all properties that start with the groupName prefix.
- getProperty(String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Utility method to get a property value from the properties file
- getProperty(String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getProperty(String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Utility method to get a property value from the properties file
- getProperty(String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Utility method to get a property value from the properties file
- getProperty(String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Utility method to get a property value from the properties file for a
specific skin.
- getPropertyDescriptors() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewBeanInfo
-
Gets the bean's PropertyDescriptors.
- getPropertyNames() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get a set of all property names.
- getPropertyNames() - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getPropertyNames() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get a set of all property names.
- getPropertyNames() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Get a set of all property names.
- getPropertyNames(String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get a set of all property names for a given skin.
- getPropertyNamesByGroup(String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Get a Set of all property names that start with the groupName prefix.
- getPropertyNamesByGroup(String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- getPropertyNamesByGroup(String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Get a Set of all property names that start with the groupName prefix.
- getPropertyNamesByGroup(String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Get a Set of all property names that start with the groupName prefix.
- getPropertyNamesByGroup(String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Get a Set of all property names that start with the groupName prefix.
- getProtocol() - Method in class edu.ucsb.nceas.metacat.MetacatURL
-
Returns the type of the url.
- getProtocolVersion() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.Identify
-
Get the oai:protocolVersion value from the Identify response
- getPublicaccess() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getPublicSession() - Method in class edu.ucsb.nceas.metacat.service.SessionService
-
Get the public session from the session hash table.
- getQformat() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property qformat.
- getQformat() - Method in class edu.ucsb.nceas.metacat.DBQuery
-
- getQueryEngineDescription(Session, String) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
- getQueryEngineDescription(Session, String) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
- getQueryEngineDescription(String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- getQueryEngineDescription(String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getQueryEngineDescritpion() - Method in class edu.ucsb.nceas.metacat.index.MetacatSolrEngineDescriptionHandler
-
Get the QueryEngineDescription
- getQueryGroup() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
get the QueryGroup used to express query constraints
- getQueryTitle() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return the title of this Query
- getRealApplicationContext() - Static method in class edu.ucsb.nceas.metacat.service.ServiceService
-
Get the servlet context name
- getRealConfigDir() - Static method in class edu.ucsb.nceas.metacat.service.ServiceService
-
Convert the relative config directory to a full path
- getRealSkinDir() - Static method in class edu.ucsb.nceas.metacat.service.ServiceService
-
Convert the relative skins directory to a full path
- getRecommendedExternalDir() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Returns the recommended external base directory.
- GetRecord - Class in edu.ucsb.nceas.metacat.oaipmh.harvester
-
This class represents an GetRecord response on either the server or on the
client
- GetRecord() - Constructor for class edu.ucsb.nceas.metacat.oaipmh.harvester.GetRecord
-
Mock object constructor (for unit testing purposes)
- GetRecord(String, String, String) - Constructor for class edu.ucsb.nceas.metacat.oaipmh.harvester.GetRecord
-
Client-side GetRecord verb constructor
- getRecord(String, String) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
Retrieve the specified metadata for the specified oaiIdentifier
- getReferences() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get the references
- getRegisteredNoNamespaceSchemaList() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Gets the registered schema list without the name space.
- getRegisteredSchemaList() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Gets the registered schema list.
- getRegisteredSession(String) - Method in class edu.ucsb.nceas.metacat.service.SessionService
-
Get a registered session from the session hash table.
- getReplica(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Essentially a get() but with different logging behavior
- getReplica(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getReplica(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- getReplication() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Get replication xml or not option
- getReplicationDocumentListSQL() - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
This method will return the sql command to get document list in xml_document
in replication.
- getReplicationDocumentListSQL() - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
Return a hard code string to get xml_document list in timed replcation
- getReplicationDocumentListSQL() - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
Return a hard code string to get xml_document list in timed replcation
- getReplicationDocumentListSQL() - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
Return a hard code string to get xml_document list in timed replcation
- getReplicationValue(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
To a given server name, try to get its xml replciation option
If couldn't find the server in the server list, false will return
- getReport(String[], String[], String[], String[], Timestamp, Timestamp, boolean) - Method in class edu.ucsb.nceas.metacat.EventLog
-
Get a report of the log events that match a set of filters.
- getRequestURL() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get the OAI request URL for this response
- getResource(Model, String) - Static method in class edu.ucsb.nceas.metacat.dataone.resourcemap.ResourceMapModifier
-
Get the Resource object which has the given identifier
- getResult(HashMap, HttpServletRequest, HttpServletResponse, Transformer, HashMap) - Static method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
- getResultsetXSL(HttpServletRequest) - Method in class edu.ucsb.nceas.metacat.advancedsearch.MetacatHelper
-
Gets the path to the resultset XSL file.
- getResultsJSP() - Method in class edu.ucsb.nceas.metacat.advancedsearch.MetacatHelper
-
Gets the relative path to the advancedsearchresults.jsp file.
- getResumptionToken() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.ListIdentifiers
-
Get the oai:resumptionToken from the response
- getResumptionToken() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.ListRecords
-
Get the oai:resumptionToken from the response
- getResumptionToken() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.ListSets
-
Get the oai:resumptionToken from the response
- getReturnDocList() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return a vector of the return document types as
defined in the <returndoctype> tag in the pathquery dtd.
- getReturnfield() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property returnField.
- getReturnFieldList() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Accessor method to return a vector of the extended return fields as
defined in the <returnfield> tag in the pathquery dtd.
- getRev() - Method in class edu.ucsb.nceas.metacat.AccessionNumber
-
returns the revision number encoded in this accession number
- getRev() - Method in class edu.ucsb.nceas.metacat.DocumentIdentifier
-
returns the revision number encoded in this docid
- getRev() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getRevision() - Method in class edu.ucsb.nceas.metacat.RemoteDocument
-
Method to get revsion
- getRevisionFromAccessionNumber(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
This method will get revision from an AccessionNumber.
- getRevisionStringFromString(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Utility method to get version string from a given string
- getRevisionsVect() - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
- getRevListFromRevisionTable(String) - Static method in class edu.ucsb.nceas.metacat.DBUtil
-
Method to return a rev list in xml_revision for given docid.
- getRootNodeID() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the root node id of this node
- getRootNodeId() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- getRootNodeID() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the root node identifier
- getSchemaFileNameFromUri(String) - Static method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Get a schema file name from the schema uri.
- getSchemaLocation() - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestSiteSchedule
-
Accessor method for the schemaLocation field.
- getSchemaLocation() - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get the xsi:schemaLocation for the OAI response
- getSchemaLocations(String) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
Retrieve a list of schemaLocation values associated with the specified
oaiIdentifier.
- getScriptSuffixes() - Static method in class edu.ucsb.nceas.metacat.util.DatabaseUtil
-
Gets the available upgrade versions for metacat by getting a list of
upgrade script from properties in metacat.properties that start with
"database.upgradeVersion".
- getSearchMode() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
get the searchmode parameter
- getSecureContextURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the secure server URL with the context.
- getSecureServer() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the secure server which is made up of the server name + : + the
https port number.
- getSecureServerURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the secure server URL which is made up of the server name + : + the
https port number.
- getSelectQueryMap() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
Queries Metacat for document listings, and returns the results in a TreeMap,
where the key is the Doc Id, and the value is the Create Date.
- getSeparator() - Method in class edu.ucsb.nceas.metacat.DocumentIdentifier
-
returns the separator used in the accession number
- getSerializer(String, Class, QName) - Static method in class edu.ucsb.nceas.shared.xsd.FileNotFoundException
-
Get Custom Serializer
- getSerializer(String, Class, QName) - Static method in class edu.ucsb.nceas.shared.xsd.IOException
-
Get Custom Serializer
- getServerCodeForServerName(String) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Returns a server code given a server name
- getServerCodes() - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Returns a Map of serverCode=serverName
- getServerLocation() - Method in class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateORE
-
- getServerLocation() - Method in class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateSystemMetadata
-
- getServerLocation() - Method in class edu.ucsb.nceas.metacat.admin.upgrade.RemoveInvalidReplicas
-
- getServerLocation() - Method in class edu.ucsb.nceas.metacat.admin.upgrade.UpdateDOI
-
- getServerlocation() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getServerName() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Get server name
- getServerName() - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
Gets the server name
- getServerNameForServerCode(int) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
Returns the name of a server given a serverCode
- getServerURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the server URL which is made up of the server name + : + the http
port number.
- getServletURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the servlet URL.
- getSession() - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
retrieve the out-of-band session
- getSessionData(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Get the session data from a request.
- getSessionDataFromToken(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Get SessionData from the DataONE auth token
- getSessionId() - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Get the session identifier for this session.
- getSessionId() - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Get the session identifier for this session.
- getSessionId() - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Get the session identifier for this session.
- getSessionId() - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
- getSessionid() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property sessionId.
- getSessionId() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatAuthenticatedEcogridEndPoint
-
- getSessions() - Method in class edu.ucsb.nceas.metacat.AuthSession
-
Get the new session
- getSetSpecs(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
get the setspec from the item
- getSingleString(String) - Method in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
Get the String value for the given XPath location in the response DOM
- getSiteCode() - Method in class edu.ucsb.nceas.metacat.DocumentIdentifier
-
returns the siteCode encoded in this docid
- getSiteDocument() - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestDocument
-
Retrieve the document from the site using its value.
- getSiteKeyword() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
Get the keyword string for this site.
- getSiteValue() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSizeOfDBConnectionPool() - Method in class edu.ucsb.nceas.metacat.database.DBConnectionPool
-
Method to get the size of DBConnectionPool
- getSkinNames() - Static method in class edu.ucsb.nceas.metacat.util.SkinUtil
-
Gets a list of available skin names by parsing a csv property from
metacat.properties.
- getSmartDocId(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
This method will call both getDocIdFromString and
getDocIdFromAccessionNumber.
- getSortedReturnFieldString() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Method to return a String generated after sorting the returnFieldList
Vector
- getSouthBound() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSQLDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the SQL directory.
- getSRBEcogridEndPoint() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
Gets the end point which SRB implements ecogrid interface.
- getSRBMachineName() - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatEcogridEndPoint
-
Gets the machine name which srb protocol will be used.
- getStartDate() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getStartDateFromDelay(String) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Extract the start date from the delay value
- getStartedDescribesNodeId() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get the start described id
- getStartElementName() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get startElementName
- getStartNodeId() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get start node id
- getStartTime() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getStatus() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion status from the object
- getStatus(Session) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Get the status of the system.
- getStatus() - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
- getStoredBackupDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Gets the stored backup location.
- getStoredTmpNodeStack() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Get storedTempNodeStack
- getStringDelimiter() - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
The character that the specific database implementation uses to
indicate string literals in SQL.
- getStringDelimiter() - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
The Oracles's string delimiter character: single quote (')
- getStringDelimiter() - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
PostgreSQL's string delimiter character: single quote (')
- getStringDelimiter() - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
The SQL Server's string delimiter character: single quote (')
- getStringFromInputStream(InputStream) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getStringFromInputStream(InputStream) - Static method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMetaData
-
- getStyleCommonURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the style common URL.
- getStyleSkinsDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the style skins directory.
- getStyleSkinsURL() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the style skins URL.
- getSubjectAllAny() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSubjectField() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSubjectQueryType() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSubjectsOfDocumentedBy(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.resourcemap.ResourceMapModifier
-
Get all subjects of the triple - * is documentedBy metadataId on the resource map
- getSubjectValue() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getSubTreeId() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get the subTreeId
- getSubTreeNodeStack() - Method in class edu.ucsb.nceas.metacat.SubTree
-
Get subtree node stack
- getSubversion(int) - Method in class edu.ucsb.nceas.metacat.Version
-
- getSystem() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
For a given site, return system attribute search string for that
site's EML documents.
- getSystemID() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the system identifier
- getSystemMetadata(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Return the system metadata for a given object
- getSystemMetadata(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Return the system metadata for a given object
- getSystemMetadata(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- getSystemMetadata(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- getSystemMetadata(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- getSystemMetadata(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- getSystemMetadata(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
return a hash of all of the info that is in the systemmetadata table
- getSystemMetadataContent(String) - Static method in class edu.ucsb.nceas.metacat.util.ReplicationUtil
-
return the contents between start and end tag
- getSystemMetadataForPID(Identifier, String, String, String, boolean) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Get the system metadata for the given PID (not a sid).
- getSystemMetadataMap() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Get the system metadata map
- getSystemMetadataObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Implements REST version of DataONE CRUD API --> getSystemMetadata
- getSystemMetadataObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNResourceHandler
-
Retrieve System Metadata
- getSystemMetadataObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Implements REST version of DataONE CRUD API --> getSystemMetadata
- getSystemMetadataObject(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNResourceHandler
-
Retrieve System Metadata
- getSystemMetadataVect() - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
- getTag() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion tag from the object
- getTagName() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Get the name of this node
- getTaxon() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getTaxonQueryType() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getTempDirectory() - Static method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
return the directory where temp files are stored
- getTextContent(XPath, Node) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- getTransformer(String) - Static method in class edu.ucsb.nceas.metacat.DBTransform
-
The method that manages the Templates Map instances that will be used to build
transformers from.
- getTriggerName() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- getType() - Static method in class edu.ucsb.nceas.metacat.service.XMLNoNamespaceSchema
-
Return the type of schema.
- getType() - Static method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Return the type of the schema.
- getTypeDesc() - Static method in class edu.ucsb.nceas.shared.xsd.FileNotFoundException
-
Return type metadata object
- getTypeDesc() - Static method in class edu.ucsb.nceas.shared.xsd.IOException
-
Return type metadata object
- getUnfoundDocId() - Method in exception edu.ucsb.nceas.metacat.McdbDocNotFoundException
-
Method to get the docid which couldn't be found
- getUnfoundRevision() - Method in exception edu.ucsb.nceas.metacat.McdbDocNotFoundException
-
Method to get the docid's revsion which couldn't be found
- getUniqueID(Connection, String) - Method in class edu.ucsb.nceas.dbadapter.AbstractDatabase
-
Unique ID generator
- getUniqueID(Connection, String) - Method in class edu.ucsb.nceas.dbadapter.OracleAdapter
-
The Oracle unique ID generator through use of sequences
The name of the sequence used to generate the unique id
is made from the name of the table that uses the id by
appending "_id_seq" to it.
- getUniqueID(Connection, String) - Method in class edu.ucsb.nceas.dbadapter.PostgresqlAdapter
-
The PostgreSQL unique ID /sequence generator
The name of the sequence used to generate the unique id
is made from the name of the table that uses the id by
appending "_id_seq" to it.
- getUniqueID(Connection, String) - Method in class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
The SQL Server unique ID generator through use of IDENTITY key
The IDENTITY key is a column in the table.
- getUniqueId() - Method in class edu.ucsb.nceas.metacat.DocumentIdentifier
-
returns the uniqueId encoded in this docid
- getUnReadableInlineDataIdList(String, String, String[]) - Static method in class edu.ucsb.nceas.metacat.PermissionController
-
A static method to get Hashtable which cointains a inlinedata object list that
user can't read it.
- getUnRegisteredDBVersion() - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Finds the version of the database for a database that does not have a
dbVersion table yet.
- getUnWritableInlineDataIdList(String, String, String[], boolean) - Static method in class edu.ucsb.nceas.metacat.PermissionController
-
A static method to get Hashtable which cointains a inline data object list that
user can't overwrite it.
- getUpdateClasses() - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
- getUpdateDate() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
get the update date
- getUpdatedSystemMetadataIds(Date) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
returns a list of system metadata-only guids since the given date
- getUpdateScripts() - Method in class edu.ucsb.nceas.metacat.admin.DBAdmin
-
Creates a list of database update script names by looking at the database
version and the metacat version and then getting any script that is
inbetween the two (inclusive of metacat version).
- getUpdateScripts() - Method in class edu.ucsb.nceas.metacat.database.DBVersion
-
Get the update script list for this version
- getUpdatesVect() - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
- getUpgradeVersions() - Static method in class edu.ucsb.nceas.metacat.util.DatabaseUtil
-
Gets the available upgrade versions for metacat by getting a list of
upgrade script from properties in metacat.properties that start with
"database.upgradeVersion".
- getURLBytes(URL) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
This method returns a byte array after opening a url
- getURLContent(URL) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
This method returns the content of a url
- getURLStream(URL) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
This method returns the InputStream after opening a url
- getUsageCount() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion usage times from the object
- getUser() - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- getUserAgent() - Method in class edu.ucsb.nceas.metacat.EventLogData
-
- getUserHomeDir() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the current user's home directory
- getUserInfo(String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getUserInfo(String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get information for a user - name, organization and email address.
- getUserInfo(String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get all users from the authentication service
- getUserInfo(String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get all users from the authentication service
- getUserInfo(String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get all users from the authentication service
- getUserManagementUrl() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Get the url pointing to the user management page.
- getUsername() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- getUsername() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property userName.
- getUserName(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Gets the user name from the login session on the http request
- getUserName() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- getUserowner() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getUsers(String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getUsers(String, String, String) - Method in class edu.ucsb.nceas.metacat.authentication.AuthFile
-
- getUsers(String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get all users from the authentication service
- getUsers(String, String, String) - Method in interface edu.ucsb.nceas.metacat.AuthInterface
-
Get the users for a particular group from the authentication service
- getUsers(String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get all users from the authentication service
- getUsers(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthLdap
-
Get the users for a particular group from the authentication service
- getUsers(String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get all users from the authentication service
- getUsers(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthStub
-
Get the users for a particular group from the authentication service
- getUsers(String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get all users from the authentication service
- getUsers(String, String, String) - Method in class edu.ucsb.nceas.metacat.AuthTest
-
Get the users for a particular group from the authentication service
- getUserupdated() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getValidateType() - Method in class edu.ucsb.nceas.metacat.DocumentImpl
-
- getValue() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
get the Value parameter
- getValue() - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- getVersion(String) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeVersionChecker
-
Get the version of the service name for the node.
- getVERSION() - Static method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Get the VERSION number
- getVersionAsXml() - Static method in class edu.ucsb.nceas.metacat.MetacatVersion
-
Get the version number in an XML document.
- getVersionFromString(String) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
Utility method to get version number from a given string
- getVersionID() - Static method in class edu.ucsb.nceas.metacat.MetacatVersion
-
Get the current version string for this metacat instance.
- getVersionString() - Method in class edu.ucsb.nceas.metacat.Version
-
- getWarningMessage() - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
get the db connetion waring message from the object
- getWestBound() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- getWriter(HttpServletRequest, HttpServletResponse) - Static method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Get a response Writer depending on acceptable encodings
- getXMLAccessForDoc(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Get all xml access for a document
- getXMLAccessForPrincipal(String, String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Get all xml access for a principal for a certain document
- getXMLAccessForPrincipal(String, String, String, String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Get all xml access for a principal/permType/permOrder for a certain document
- getZippedPackage(String, ServletOutputStream, String, String[], String) - Method in class edu.ucsb.nceas.metacat.DBQuery
-
put a data packadge into a zip output stream
- GROUPDESINDEX - Static variable in interface edu.ucsb.nceas.metacat.AuthInterface
-
- GROUPNAMEINDEX - Static variable in interface edu.ucsb.nceas.metacat.AuthInterface
-
- groups - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- identifierExists(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Determine if an identifier exists already, returning true if so.
- IdentifierManager - Class in edu.ucsb.nceas.metacat
-
Manage the relationship between Metacat local identifiers (LocalIDs) that are
codified as the (docid, rev) pair with globally unique string identifiers
(GUIDs) that are opaque strings.
- Identify - Class in edu.ucsb.nceas.metacat.oaipmh.harvester
-
This class represents an Identify response on either the server or on the
client
- Identify() - Constructor for class edu.ucsb.nceas.metacat.oaipmh.harvester.Identify
-
Mock object constructor (for unit testing purposes)
- Identify(String) - Constructor for class edu.ucsb.nceas.metacat.oaipmh.harvester.Identify
-
Client-side Identify verb constructor
- idExists(String) - Method in class edu.ucsb.nceas.metacat.DBUtil
-
return true if the given docid is registered in either the xml_documents
or xml_revisions table
- ignorableWhitespace(char[], int, int) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that is called for each XML text node that is Ignorable
white space
- ignorableWhitespace(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
SAX Handler that is called for each XML text node that is Ignorable
white space
- ignorableWhitespace(char[], int, int) - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
SAX Handler that is called for each XML text node that is Ignorable white
space
- ignoreDenyFirst - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- incChildNum() - Method in class edu.ucsb.nceas.metacat.BasicNode
-
increase childNum when new child for the node is created
- increaseCheckOutSerialNumber(int) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Increase a usage number to this object
- increaseUsageCount(int) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Increase a usage number to this object
- indexEphemeralAnnotation(Identifier) - Method in class edu.ucsb.nceas.metacat.annotation.DatapackageSummarizer
-
- IndexEventDAO - Class in edu.ucsb.nceas.metacat.index
-
- IndexEventMapStore - Class in edu.ucsb.nceas.metacat.index
-
- IndexEventMapStore() - Constructor for class edu.ucsb.nceas.metacat.index.IndexEventMapStore
-
- IndexingQueue - Class in edu.ucsb.nceas.metacat
-
- IndexingTimerTask - Class in edu.ucsb.nceas.metacat
-
- IndexingTimerTask() - Constructor for class edu.ucsb.nceas.metacat.IndexingTimerTask
-
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.admin.MetacatAdminServlet
-
Initialize the servlet
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchServlet
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.advancedsearch.BrowseServlet
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginServlet
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.advancedsearch.SearchServlet
-
Initializes the servlet.
- init() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Initializes the Hazelcast service
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterRegistration
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvesterServlet
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.harvesterClient.MetUpload
-
Initializes the servlet.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Initialize the servlet by creating appropriate database connections
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
init is called one time when the Servlet is loaded.
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServlet
-
Initialize the servlet by creating appropriate database connections
- init(ServletConfig) - Method in class edu.ucsb.nceas.metacat.restservice.D1RestServlet
-
Initalize servlet by setting logger
- init(FilterConfig) - Method in class edu.ucsb.nceas.metacat.restservice.D1URLFilter
-
- init(FilterConfig) - Method in class edu.ucsb.nceas.metacat.spatial.WmsFilter
-
- initLogIDs() - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Initializes the detailLogID and harvestLogID values to their current
maximums + 1.
- initMultipartParams() - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
Collect the multipart params from the request
- initParams() - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
copies request parameters to a hashtable which is given as argument to
native metacathandler functions
- initParser(DefaultHandler) - Static method in class edu.ucsb.nceas.metacat.replication.ReplicationHandler
-
Method to initialize the message parser
- initSecondHalf(ServletContext) - Method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Initialize the remainder of the servlet.
- initService(LSIDServiceConfig) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityData
-
- initService(LSIDServiceConfig) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMain
-
- initService(LSIDServiceConfig) - Method in class edu.ucsb.nceas.metacat.lsid.LSIDAuthorityMetaData
-
- INLINE - Static variable in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
- INLINE - Static variable in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
- INLINE_DATA_DISTRIBUTION - Static variable in class edu.ucsb.nceas.metacat.DistributionSection
-
- InputStreamDataSource - Class in edu.ucsb.nceas.metacat.restservice
-
Encapsulate an InputStream within a DataSource interface so that it is
accessible to MIME processors.
- InputStreamDataSource(String, InputStream) - Constructor for class edu.ucsb.nceas.metacat.restservice.InputStreamDataSource
-
- insert(String, Reader, Reader) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Insert an XML document into the repository, making it available for
searching using the query() methods.
- insert(String, Reader, Reader) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Insert an XML document into the repository.
- insertAccess(String, List<XMLAccessDAO>) - Method in class edu.ucsb.nceas.metacat.accesscontrol.XMLAccessAccess
-
Set permissions for a given document.
- insertDataObject(InputStream, Identifier, Session, Checksum) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Insert a data document
- insertOrUpdate(String, SimpleFeature, String) - Method in class edu.ucsb.nceas.metacat.spatial.SpatialDataset
-
Either inserts or updates the spatial cache with the new
spatial document depending on if it currently exists.
- insertOrUpdateDocument(InputStream, String, Identifier, Session, String, String, Checksum) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Insert or update an XML document into Metacat
- insertOrUpdateSystemMetadata(SystemMetadata) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
creates a system metadata mapping and adds additional fields from sysmeta
to the table for quick searching.
- insertPermissions(XMLAccessDAO) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Insert a single access record into the database based on access DAO
object
- insertPermissions(String, Long, String, String, String, String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Insert a single access record into the database.
- insertPermissions(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlForSingleFile
-
Replace existing permissions with a given block of permissions for this
document.
- insertSystemMetadata(SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Insert a systemMetadata document and return its localId
- InsufficientKarmaException - Exception in edu.ucsb.nceas.metacat.client
-
Exception thrown when an error occurs because a Metacat server operation
requires higher access rights than the currently logged in user has.
- InsufficientKarmaException(String) - Constructor for exception edu.ucsb.nceas.metacat.client.InsufficientKarmaException
-
Create a new InsufficientKarmaException.
- internalEntityDecl(String, String) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of internal entity declarations
- INTERSECT - Static variable in class edu.ucsb.nceas.metacat.QueryGroup
-
- intValue(String) - Static method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
- INVALIDCODE - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- IOException - Class in edu.ucsb.nceas.shared.xsd
-
- IOException() - Constructor for class edu.ucsb.nceas.shared.xsd.IOException
-
- IOException(Object) - Constructor for class edu.ucsb.nceas.shared.xsd.IOException
-
- isAdministrator(String, String[]) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Check if the specified user is part of the administrators list
- isAllowedSubmitter(String, String[]) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Check if the specified user is part of the moderators list
- isAuthConfigured() - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Reports whether LDAP is fully configured.
- isAuthoritativeMNodeAdmin(Session, NodeReference, NodeList) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Compare the session.subject to the authoritativeMN Node.nodeSubjects list of Subjects.
- isAuthoritativeNode(Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Determine if the current node is the authoritative node for the given pid.
- isAuthorized(String, String, String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Method used to log in to a metacat server.
- isAuthorized(Session, Identifier, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Test if the user identified by the provided token has authorization
for the operation on the specified object.
- isAuthorized(Identifier, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- isAuthorized(Session, Identifier, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- isAuthorized(Identifier, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- isAuthorized(Session, Identifier, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- isAuthorized(PrintWriter, Hashtable<String, String[]>, HttpServletRequest, HttpServletResponse) - Static method in class edu.ucsb.nceas.metacat.util.DocumentUtil
-
- isAuthorizedBySysMetaSubjects(Session, SystemMetadata, Permission) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Returns the authorization status of the Session vs.
- isAvailableFor(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml200
-
Can this nativeItem be represented in 'eml-2.0.0' format?
- isAvailableFor(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml201
-
Can this nativeItem be represented in 'eml-2.0.1' format?
- isAvailableFor(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml210
-
Can this nativeItem be represented in 'eml-2.1.0' format?
- isAvailableFor(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml211
-
Can this nativeItem be represented in 'eml-2.1.1' format?
- isAvailableFor(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml2oai_dc
-
Can this nativeItem be represented in DC format?
- isBackupDirConfigured() - Static method in class edu.ucsb.nceas.metacat.util.ConfigurationUtil
-
Check if the application.backupDir property is populated in
metacat.properties and that it points to a writable directory.
- isBoundaryContained() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- isCaseSensitive() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- isCaseSensitive() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
determine if the QueryTerm is case sensitive
- isCNAdmin(Session, NodeList) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
compares session.subject against CN.NodeList
- isD1Enabled() - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
subclasses should provide a more useful implementation
- isD1Enabled() - Method in class edu.ucsb.nceas.metacat.restservice.v1.MNResourceHandler
-
- isD1Enabled() - Method in class edu.ucsb.nceas.metacat.restservice.v2.MNResourceHandler
-
- isDatabaseConfigured() - Static method in class edu.ucsb.nceas.metacat.util.DatabaseUtil
-
Reports whether database is fully configured.
- isDataOneConfigured() - Static method in class edu.ucsb.nceas.metacat.util.DataONEConfigUtil
-
Reports whether dataONE is configured.
- isDeleted(String) - Method in class edu.ucsb.nceas.metacat.EventLog
-
A utility method to determine if the given docid was deleted.
- isDeleted(Object) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatRecordFactory
-
Is the record deleted?
- isDeniedSubmitter(String, String[]) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Check if the specified user is part of the moderators list
- isElementContentWhitespace(Text) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- isEmpty(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
Boolean to determine whether a string is empty.
- isEmpty() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
Method to determine the server list is empty or not
- isEqual(AccessPolicy, AccessPolicy) - Method in class edu.ucsb.nceas.metacat.dataone.SyncAccessPolicy
-
Compare two d1 system metadata access policies for equivalence.
- isEZIDConfigured() - Static method in class edu.ucsb.nceas.metacat.util.ConfigurationUtil
-
- isFGDC(Document) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientFgdcHelper
-
- isFullyInitialized() - Static method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
Reports whether the MetaCatServlet has been fully initialized
- isGeoserverConfigured() - Static method in class edu.ucsb.nceas.metacat.util.GeoserverUtil
-
Reports whether geoserver is configured.
- isGivenServerInList(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
Method to determine if a given server in the replication server list
- isIntegratedWithMetacat() - Static method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Boolean to determine whether the Data Provider code is executing in a
Metacat application.
- isInternalURLReplacedByExternal() - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Check if the internal url has been replaced by external url.
- isInUnionGroup() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
If this query group in Union group
- isLimitedByBoundaries() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- isLimitedByDate() - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- isLocalCNAdmin(Session) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Test if the user identified by the provided token has administrative authorization
on this node because they are calling themselves
(the implementation uses property Settings to build a Node instance)
- isLocalMNAdmin(Session) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Test if the user identified by the provided token has administrative authorization
on this node because they are calling themselves
(the implementation uses property Settings to build a Node instance)
- isLocalNodeAdmin(Session, NodeType) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
Checks Metacat properties representing the local Node document for
matching Node.subjects.
- isLoggedIn() - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
A convenience method to be used by client code that requires
the user to be logged in.
- isMetacatConfigured() - Static method in class edu.ucsb.nceas.metacat.util.ConfigurationUtil
-
Reports whether metacat is fully configured.
- isMetadataFile(File) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.catalog.MetacatCatalog
-
Override this method if some files exist in the filesystem that aren't
metadata records.
- isModerator(String, String[]) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Check if the specified user is part of the moderators list
- isNamespaceRegistered(String) - Static method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Test if the given namespace registered in Metacat
- isNodeAuthorized(Session, Subject, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Verify that a replication task is authorized by comparing the target node's
Subject (from the X.509 certificate-derived Session) with the list of
subjects in the known, pending replication tasks map.
- isNodeAuthorized(Subject, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- isNodeAuthorized(Session, Subject, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- isNodeAuthorized(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Pass the request to get node replication authorization to CNodeService
- isNodeAuthorized(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Pass the request to get node replication authorization to CNodeService
- isNotEqualTerm() - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
- isPercentageSearch() - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Method to indicate this query is a percentage search
- isPublicAccess() - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Getter for property publicAccess.
- isReadOnly(HttpServletResponse) - Static method in class edu.ucsb.nceas.metacat.MetaCatServlet
-
- isReadOnly() - Method in class edu.ucsb.nceas.metacat.ReadOnlyChecker
-
Check if the mode is the read-only.
- isReadOnlyMode() - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
Check if the metacat is in the read-only mode.
- isRegistered(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
return true of the given docid is registered, false if not
- isRegistered(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
return true of the given docid is registered, false if not
- isRegistered(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
return true of the given docid is registered, false if not
- isRegistered(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
return true of the given docid is registered, false if not
- isReplicaMNodeAdmin(Session, SystemMetadata, NodeList) - Method in class edu.ucsb.nceas.metacat.dataone.D1AuthHelper
-
determines if the session represents a replicaMN of the given systemMetadata.
- isSchemaRegistered(XMLSchema) - Static method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
Returns true if the schema is registered.
- isScienceMetadata(SystemMetadata) - Static method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Determine if a given object should be treated as an XML science metadata
object.
- isServiceUnavailable(Properties) - Method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.OAIHandler
-
Should the server report itself down for maintenance? Override this method
if you want to do this check another way.
- isSessionRegistered(String) - Method in class edu.ucsb.nceas.metacat.service.SessionService
-
Check if a session is registered in the session hash table.
- isSuccessXML(String) - Static method in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- isUserLoggedIn(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Checks to see if the user is logged in by grabbing the session from the
request and seeing if it exists in the global session list.
- isUserLoggedInAsAdmin(HttpServletRequest) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Checks to see if the user is logged in as admin by first checking if the
user is logged in and then seeing if the user's account is on the
administrators list in metacat.properties.
- isValidIdentifier(Identifier) - Static method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Check for whitespace in the given pid.
- isValidSite() - Method in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
Boolean to determine whether a given string is a valid LTER site.
- itemAdded(ItemEvent<Identifier>) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Respond to itemAdded events on the hzMissingIdentifiers Set.
- itemRemoved(ItemEvent<Identifier>) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Respond to itemRemoved events on the hzMissingIdentifiers Set
- save() - Method in class edu.ucsb.nceas.metacat.spatial.SpatialDataset
-
Saves the SpatialDataset object to the spatial cache.
- SCHEDULE_WORKFLOW_ERROR - Static variable in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- scheduleDelayedJob(String, String, String, String, HashMap<String, String>, String, String[]) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
schedule a job one time with a given delay.
- ScheduledJobAccess - Class in edu.ucsb.nceas.metacat.scheduler
-
- ScheduledJobAccess() - Constructor for class edu.ucsb.nceas.metacat.scheduler.ScheduledJobAccess
-
- ScheduledJobDAO - Class in edu.ucsb.nceas.metacat.scheduler
-
- ScheduledJobDAO() - Constructor for class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- ScheduledJobParamAccess - Class in edu.ucsb.nceas.metacat.scheduler
-
- ScheduledJobParamAccess() - Constructor for class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamAccess
-
- ScheduledJobParamDAO - Class in edu.ucsb.nceas.metacat.scheduler
-
- ScheduledJobParamDAO() - Constructor for class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- scheduleJob(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>) - Method in class edu.ucsb.nceas.metacat.scheduler.BaseScheduler
-
- scheduleJob(ScheduledJobDAO, String, String[]) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
Schedule a job
- scheduleJob(String, Calendar, Calendar, int, String, String, String, HashMap<String, String>) - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
schedule a job
- scheduleJob(HttpServletRequest, HttpServletResponse, Hashtable<String, String[]>, String, String[]) - Method in class edu.ucsb.nceas.metacat.workflow.WorkflowSchedulerClient
-
Scheduling a workflow
- SchedulerService - Class in edu.ucsb.nceas.metacat.scheduler
-
- scheduleSitemapGeneration(HttpServletRequest) - Method in class edu.ucsb.nceas.metacat.MetacatHandler
-
Schedule the sitemap generator to run periodically and update all
of the sitemap files for search indexing engines.
- SCHEMA - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- SCHEMA_DIR - Static variable in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
- SCHEMA_LOCATION_V2_0 - Static variable in class edu.ucsb.nceas.metacat.oaipmh.harvester.HarvesterVerb
-
- schemaList - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- SCHEMALOCATION - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- SCHEMALOCATIONKEYWORD - Static variable in class edu.ucsb.nceas.metacat.MetaCatServlet
-
- SchemaLocationResolver - Class in edu.ucsb.nceas.metacat
-
A database aware Class to handle schema location.
- SchemaLocationResolver() - Constructor for class edu.ucsb.nceas.metacat.SchemaLocationResolver
-
- SchemaLocationResolver(String) - Constructor for class edu.ucsb.nceas.metacat.SchemaLocationResolver
-
Construct an instance of the SchemaLocationResolver class
- SchemaLocationResolver(String, String) - Constructor for class edu.ucsb.nceas.metacat.SchemaLocationResolver
-
Construct an instance of the SchemaLocationResolver class
- SCHEMAVALIDATIONFEATURE - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- search(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Metacat does not implement this method at the CN level
- search(String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- search(Session, String, String) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- SearchServlet - Class in edu.ucsb.nceas.metacat.advancedsearch
-
- SearchServlet() - Constructor for class edu.ucsb.nceas.metacat.advancedsearch.SearchServlet
-
- searchUser(String, String[][]) - Static method in class edu.ucsb.nceas.metacat.AuthLdap
-
Method for getting index of user DN in User info array
- SECONDHIGHESTVERSION - Static variable in class edu.ucsb.nceas.metacat.dataone.D1NodeVersionChecker
-
- SECONDLY - Static variable in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- SELECT_MESSAGE - Static variable in class edu.ucsb.nceas.metacat.clientview.ClientView
-
- send(HttpServletResponse, String) - Static method in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- sendErrorXML(HttpServletResponse, Long, BaseException) - Static method in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- sendErrorXML(HttpServletResponse, Long, String) - Static method in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- sendParameters(Properties) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Send a request to Metacat.
- sendParametersInverted(Properties) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Send a request to Metacat.
- sendSuccessXML(HttpServletResponse, String) - Static method in class edu.ucsb.nceas.metacat.util.ResponseUtil
-
- serializeDoc(Document) - Method in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
Serialize the given doc object to a string
- serializeException(BaseException, OutputStream) - Method in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
serialize a D1 exception using jibx
- serverAt(int) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
Method to get a server object given a index number
- serverCode - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- ServiceException - Exception in edu.ucsb.nceas.metacat.shared
-
Exception thrown when an error occurs in a configuration administrative
class
- ServiceException(String) - Constructor for exception edu.ucsb.nceas.metacat.shared.ServiceException
-
Create a new AdminException.
- ServiceException(String, BaseException) - Constructor for exception edu.ucsb.nceas.metacat.shared.ServiceException
-
- ServiceService - Class in edu.ucsb.nceas.metacat.service
-
- servletContext - Variable in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
- session - Variable in class edu.ucsb.nceas.metacat.restservice.D1ResourceHandler
-
- session2 - Variable in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
out-of-band session object to be used when not passed in as a method parameter
- SessionData - Class in edu.ucsb.nceas.metacat.util
-
- SessionData(String, String, String[], String, String) - Constructor for class edu.ucsb.nceas.metacat.util.SessionData
-
- SessionService - Class in edu.ucsb.nceas.metacat.service
-
- set_sitemapScheduled(boolean) - Method in class edu.ucsb.nceas.metacat.MetacatHandler
-
- setAccess(String, String, String, String, String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
set the access on an XML document in the repository.
- setAccess(String, String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
- setAccess(String, String, String, String, String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
set the access on an XML document in the repository.
- setAccess(String, String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Set access for a given doc id.
- setAccess(String, String, String, String, String, String, String) - Method in class edu.ucsb.nceas.metacat.MetacatHandler
-
set the access permissions on the document specified
- setAccess(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
set the access perms on a document
- setAccess(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
set the access perms on a document
- setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Set access for a given object using the object identifier and a Subject
under a given Session.
- setAccessPolicy(Identifier, AccessPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- setAccessSection(AccessSection) - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
- setAction(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property action.
- setAction(String) - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- setAge(long) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a connection age to this object
- setAnyfield(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property anyfield.
- setAttribute(String, String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Add a new attribute to this node, or set its value
- setAttribute(String, String, String) - Method in class edu.ucsb.nceas.metacat.DBSAXNode
-
Add a new attribute to this node, or set its value
- setAutoCommit(boolean) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Method to set commit mode
- setBoundaryContained(boolean) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setCaseSensitive(boolean) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setCheckOutMethodName(String) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a method name to the checkOutMethodName
- setCheckOutSerialNumber(int) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set check out serial number to this object
- setCheckOutTime(long) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set check out time to this object
- setClassName(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setConnections(Connection) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a connection to this object
- setConnectionTime(long) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a connection time to this object
It is accumulated
- setContainsExtenedSQL(boolean) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
set if this query sepcification has extendQuery(has return doc type or
not)
- setContentStandard(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property contentStandard.
- setContextRootUrl(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
When the MetacatFactory creates an instance it needs to set the
MetacatUrl to which connections should be made.
- setContextRootUrl(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
- setControlLevel(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set a controllevel
- setCoreMessage(String) - Method in exception edu.ucsb.nceas.metacat.shared.BaseException
-
- setCreateTime(long) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a usage number to this object
- setCreatorOrganization(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setCreatorOrganizationQueryType(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setCreatorSurname(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setCreatorSurnameQueryType(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setDataFileName(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set the dataFileName
- setDataFileName(int, String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Indexed setter for property dataFileName.
- setDataFileName(String[]) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property dataFileName.
- setDataFileName(String) - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Set the online data file name
- setDataReplication(boolean) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Set data replication option
- setDateField(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setDescribedIdList(Vector<String>) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set a described id list (in data access part)
- setDirPath(String) - Static method in class edu.ucsb.nceas.metacat.oaipmh.provider.server.crosswalk.Eml2oai_dc
-
- setDistributionId(int) - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Set the distribution id
- setDistributionType(int) - Method in class edu.ucsb.nceas.metacat.DistributionSection
-
Set the distribution type
- setDocID(String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the doc id of this node
- setDocId(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property docId.
- setDocid(String) - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- setDocid(String) - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Set the document identifier.
- setDocId(String) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set the a docId
- setDoctype(String) - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- setDocumentCart(DocumentCart) - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setEastBound(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setEncoding(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Returns the character encoding used used when communicating with Metacat.
- setEncoding(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
- setEncoding(String) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- setEndDate(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setEndNodeId(long) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set a end node id
- setEndTime(Timestamp) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setEvent(String) - Method in class edu.ucsb.nceas.metacat.dataone.convert.LogV2toV1Converter.V1LogEntryWrapper
-
- setEvent(Event) - Method in class edu.ucsb.nceas.metacat.dataone.convert.LogV2toV1Converter.V2LogEntryWrapper
-
- setEvent(String) - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Set the current value of the event.
- setExternalFileUri(String) - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Sets the external file uri.
- setField(String, String) - Method in class edu.ucsb.nceas.metacat.MetacatResultSet.Document
-
- setFileName(String) - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Set the file name.
- setFileNamespace(String) - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Sets the file namespace
- setFilterDocList(Vector) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the list of filter docs of this query
- setForceRebuild(boolean) - Static method in class edu.ucsb.nceas.metacat.DBTransform
-
Set the field of forceRebuild
- setFormAllAny(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setFormatId(String) - Method in class edu.ucsb.nceas.metacat.service.XMLSchema
-
Set the format id.
- setGroup(String[]) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Method to set user group
- setGroupName(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setGroupNames(String[]) - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setGroups(String[]) - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- setHarvestStartTime(Date) - Method in class edu.ucsb.nceas.metacat.harvesterClient.Harvester
-
Sets the harvest start time for this harvest run.
- setHub(boolean) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Set hub option
- setIdentifier(String) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the identifier of this query
- setIncludeOuterQueryGroup(boolean) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchQueryGroup
-
Sets the boolean value of includeOuterQueryGroup.
- setIntervalUnit(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setIntervalValue(int) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setInUnionGroup(boolean) - Method in class edu.ucsb.nceas.metacat.QueryTerm
-
Set the query term in a union group
- setIpAddress(String) - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Set the current value of the internet protocol address.
- setIsRevisionDoc(boolean) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
Set the the handler is for revisionDoc
- setJobId(Long) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- setKey(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- setLastAccessedTime() - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setLastCheckedDate(Date) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Set a string as last checked date
- setLocationName(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setLoggedIn(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
After calling "login(ldapUserName, pwd)", call this with the username
and servers response message.
- setLoggedIn(boolean) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setMessage(int, String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Indexed setter for property message.
- setMessage(String[]) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property message.
- setMetacatRunning(boolean) - Method in class edu.ucsb.nceas.metacat.IndexingQueue
-
- setMetacatUrl(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
When the MetacatFactory creates an instance it needs to set the
MetacatUrl to which connections should be made.
- setMetacatUrl(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
When the MetacatFactory creates an instance it needs to set the
MetacatUrl to which connections should be made.
- setMetadataDoc(Document) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setMetadataDoc(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setMetadataDoc(InputStream) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setMetaFileDocId(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property isMetaFileDocId.
- setMetaFileName(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property metaFileName.
- setName(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setName(String) - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setNamedTimescale(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setNamedTimescaleQueryType(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setNamespace(String, String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Add a namespace to this node
- setNamespace(String, String, String) - Method in class edu.ucsb.nceas.metacat.DBSAXNode
-
Add a namespace to this node
- setNodeData(String) - Method in class edu.ucsb.nceas.metacat.CommentNode
-
Set the node data to the given string
- setNodeData(String) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node data of the current node
- setNodeData(String) - Method in class edu.ucsb.nceas.metacat.PINode
-
Set the node data to the given string
- setNodeData(String) - Method in class edu.ucsb.nceas.metacat.TextNode
-
Set the node data to the given string
- setNodeDataDate(Timestamp) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
- setNodeDataNumerical(float) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the numerical node data of the current node
- setNodeID(long) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the id of this node
- setNodeId(long) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node id of the current node
- setNodeIndex(int) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the node index of this node
- setNodeIndex(long) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node index of the current node
- setNodeName(String) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node name of the current node
- setNodePrefix(String) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node prefix of the current node
- setNodeType(String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the type of this node
- setNodeType(String) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node type of the current node
- setNoNamespaceSchemaLocation(String) - Method in class edu.ucsb.nceas.metacat.service.XMLNoNamespaceSchema
-
Set the no-namespace-schemal-location uri
- setNorthBound(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setObsoletedBy(Session, Identifier, Identifier, long) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Set the obsoletedBy attribute in System Metadata
- setObsoletedBy(Identifier, Identifier, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- setObsoletedBy(Session, Identifier, Identifier, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- setObsoletedBy(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Update the system metadata for a given pid, setting it to be obsoleted
by the obsoletedByPid
- setObsoletedBy(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Update the system metadata for a given pid, setting it to be obsoleted
by the obsoletedByPid
- setOperator(String) - Method in class edu.ucsb.nceas.metacat.DBQuery
-
Specifies if and how docid overrides should be included in the general query
- setOrganization(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- setOrganization(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property organization.
- setOwnerList(Vector) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the list of owners used to constrain this query
- setParentID(long) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the parent id of this node
- setParentNodeId(long) - Method in class edu.ucsb.nceas.metacat.NodeRecord
-
A method used to set the node parent id of the current node
- setPassword(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- setPassword(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property password.
- setPassword(String) - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setPathExpr(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property pathExpr.
- setPathValue(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property pathValue.
- setPermission(int) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
Set a permission.
- setPermissionOrder(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set a permissionOrder
- setPermissionType(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessRule
-
Set the permssionType
- setPreparedStatementValues(List<Object>, PreparedStatement) - Static method in class edu.ucsb.nceas.metacat.DBQuery
-
Set the parameter values in the prepared statement using instrospection
of the given value objects
- setPrincipal(String) - Method in class edu.ucsb.nceas.metacat.EventLogData
-
Set the current value of the principal.
- setProperty(String, String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Utility method to set a property value both in memory and to the
properties file
- setProperty(String, String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- setProperty(String, String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Utility method to set a property value both in memory and to the
properties file
- setProperty(String, String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Utility method to set a property value both in memory and to the
properties file
- setProperty(String, String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Utility method to set a property value both in memory and to the
properties file
- setPropertyNoPersist(String, String) - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
Utility method to set a property value in memory.
- setPropertyNoPersist(String, String) - Method in interface edu.ucsb.nceas.metacat.properties.PropertiesInterface
-
- setPropertyNoPersist(String, String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Utility method to set a property value in memory.
- setPropertyNoPersist(String, String) - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
Utility method to set a property value in memory.
- setPropertyNoPersist(String, String, String) - Static method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
Utility method to set a property value in memory.
- setPublicAccess(boolean) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property publicAccess.
- setQformat(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property qformat.
- setQformat(String) - Method in class edu.ucsb.nceas.metacat.DBQuery
-
- setQueryGroup(QueryGroup) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
set the querygroup
- setQueryTitle(String) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the title of this query
- setRecommendedExternalDir(String) - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
Sets the recommended external directory.
- setReferences(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set a references
- setReplication(boolean) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Set replication option
- setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Set the replication policy for an object given the object identifier
It only is applied to objects whose authoritative mn is a v1 node.
- setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- setReplicationPolicy(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Pass the request to set the replication policy to CNodeService
- setReplicationPolicy(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Pass the request to set the replication policy to CNodeService
- setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Set the replication status for an object given the object identifier
- setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- setReplicationStatus(String) - Method in class edu.ucsb.nceas.metacat.restservice.v1.CNResourceHandler
-
Pass the request to set the replication status to CNodeService
- setReplicationStatus(String) - Method in class edu.ucsb.nceas.metacat.restservice.v2.CNResourceHandler
-
Pass the request to set the replication status to CNodeService
- setRequestErrors(HttpServletRequest, Vector<String>) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add a list of errors to the request.
- setRequestFormErrors(HttpServletRequest, Vector<String>) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add a list of form errors to the request.
- setRequestHeader(String, String) - Method in class edu.ucsb.nceas.protocols.metacat.MetacatURLConnection
-
Set the request header for the URL
- setRequestMessage(HttpServletRequest, Vector<String>) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add a list of general messages to the request.
- setRequestSuccess(HttpServletRequest, Vector<String>) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add a list of success messages to the request.
- setReturnDocList(Vector) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the list of return docs of this query
- setReturnfield(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property returnfield.
- setReturnFieldList(Vector) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
method to set the list of fields to be returned by this query
- setRightsHolder(Session, Identifier, Subject, long) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
Changes ownership (RightsHolder) of the specified object to the
subject specified by userId
- setRightsHolder(Identifier, Subject, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
- setRightsHolder(Session, Identifier, Subject, long) - Method in class edu.ucsb.nceas.metacat.dataone.v1.CNodeService
-
Deprecated.
- setRootNodeID(long) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the root node id of this node
- setSchemaLocation(String) - Method in class edu.ucsb.nceas.metacat.harvesterClient.HarvestSiteSchedule
-
Accessor method for setting the value of the schemaLocation field.
- setServerLocation(int) - Method in class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateORE
-
- setServerLocation(int) - Method in class edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateSystemMetadata
-
- setServerLocation(int) - Method in class edu.ucsb.nceas.metacat.admin.upgrade.RemoveInvalidReplicas
-
- setServerLocation(int) - Method in class edu.ucsb.nceas.metacat.admin.upgrade.UpdateDOI
-
- setServerName(String) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServer
-
Set a sting as server name
- setSession(Session) - Method in class edu.ucsb.nceas.metacat.dataone.D1NodeService
-
Set the out-of-band session
- setSession(Session) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- setSessionId(String) - Method in interface edu.ucsb.nceas.metacat.client.Metacat
-
Set the session identifier for this session.
- setSessionId(String) - Method in class edu.ucsb.nceas.metacat.client.MetacatClient
-
Set the session identifier for this session.
- setSessionId(String) - Method in interface edu.ucsb.nceas.metacat.client.rest.MetacatRest
-
Set the session identifier for this session.
- setSessionId(String) - Method in class edu.ucsb.nceas.metacat.client.rest.MetacatRestClient
-
- setSessionid(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property sessionid.
- setSessionId(String) - Method in class edu.ucsb.nceas.metacat.dataquery.MetacatAuthenticatedEcogridEndPoint
-
- setSiteValue(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setSouthBound(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setStartDate(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setStartedDescribesNodeId(long) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set the start "describes" node id
- setStartElementName(String) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set a startElementName
- setStartNodeId(long) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set a start node id
- setStartTime(Timestamp) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setStatus(int) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a connection status to this object
- setStoredTmpNodeStack(Stack<NodeRecord>) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessSection
-
Set a storedTempNodeStack
- setSubjectAllAny(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
Sets the subjectAllAny value.
- setSubjectField(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setSubjectQueryType(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setSubjectValue(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setSubTreeId(String) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set the a subtreeId
- setSubTreeNodeStack(Stack) - Method in class edu.ucsb.nceas.metacat.SubTree
-
Set subtree node stack
- setTag(String) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a connection status to this object
- setTagName(String) - Method in class edu.ucsb.nceas.metacat.BasicNode
-
Set the name of this node
- setTaxon(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setTaxonQueryType(int) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- setTextContent(XPath, Node, String) - Static method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setTriggerName(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobDAO
-
- setUsageCount(int) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a usage number to this object
- setUser(String) - Method in class edu.ucsb.nceas.metacat.event.MetacatDocumentEvent
-
- setUserAgent(String) - Method in class edu.ucsb.nceas.metacat.EventLogData
-
- setUserId(HttpServletRequest, String) - Static method in class edu.ucsb.nceas.metacat.util.RequestUtil
-
Add the user's login id to the session on this request
- setUsername(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.LoginBean
-
- setUsername(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientView
-
Setter for property username.
- setUserName(String) - Method in class edu.ucsb.nceas.metacat.clientview.ClientViewHelper
-
- setUserName(String) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
Method to set user name
- setUserName(String) - Method in class edu.ucsb.nceas.metacat.util.SessionData
-
- setValue(String) - Method in class edu.ucsb.nceas.metacat.scheduler.ScheduledJobParamDAO
-
- setWarningMessage(SQLWarning) - Method in class edu.ucsb.nceas.metacat.database.DBConnection
-
Set a warning message to this object
- setWestBound(String) - Method in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- shrinkConnectionPoolSize() - Static method in class edu.ucsb.nceas.metacat.database.DBConnectionPool
-
Method to decrease dbconnection pool size when all dbconnections are idle
If all connections are free and connection pool size greater than initial
value, shrink connection pool size to initial value
- shrinkDBConnectionPoolSize() - Static method in class edu.ucsb.nceas.metacat.database.DBConnectionPool
-
Method to decrease dbconnection pool size when all dbconnections are idle
If all connections are free and connection pool size greater than
initial value, shrink connection pool size to intital value
- SimpleProperties - Class in edu.ucsb.nceas.metacat.properties
-
A suite of utility classes for the metadata configuration utility
- SimpleProperties() - Constructor for class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
private constructor since this is a singleton
- site - Variable in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
- siteKeywords - Variable in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
- Sitemap - Class in edu.ucsb.nceas.metacat
-
A Sitemap represents a document that lists all of the content of the Metacat
server for use by harvesting spiders that wish to index the contents of the
Metacat site.
- Sitemap(File, String, String) - Constructor for class edu.ucsb.nceas.metacat.Sitemap
-
Construct a new instance of the Sitemap.
- siteNames - Variable in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
- sites - Variable in class edu.ucsb.nceas.metacat.advancedsearch.LTERSite
-
- size() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationServerList
-
Method to get the size of serverList
- sizeOfStream(InputStream) - Static method in class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
Find the size (in bytes) of a stream.
- SkinPropertyService - Class in edu.ucsb.nceas.metacat.properties
-
A suite of utility classes for the skin configuration utility
- SkinsAdmin - Class in edu.ucsb.nceas.metacat.admin
-
Control the display of the skins configuration page and the processing
of the configuration values.
- SkinUtil - Class in edu.ucsb.nceas.metacat.util
-
- SLASH - Static variable in class edu.ucsb.nceas.metacat.dataone.resourcemap.ResourceMapModifier
-
- SldFactory - Class in edu.ucsb.nceas.metacat.spatial
-
Class to generate Styled Layer Descriptors allowing geoserver to
filter the feature rendering based on various contraints
such as permissions, non-spatial queries and skin configuration.
- SldFactory() - Constructor for class edu.ucsb.nceas.metacat.spatial.SldFactory
-
- SolrConfigUpgrader - Class in edu.ucsb.nceas.metacat.admin.upgrade.solr
-
This class represents an object to upgrade the solrconfig.xml on the Metacat upgrade process.
- SolrConfigUpgrader() - Constructor for class edu.ucsb.nceas.metacat.admin.upgrade.solr.SolrConfigUpgrader
-
Constructor
- SolrSchemaModificationException - Exception in edu.ucsb.nceas.metacat.admin.upgrade.solr
-
An exception happens when an administrator modified a the schema.xml in the solr home.
- SolrSchemaModificationException(String) - Constructor for exception edu.ucsb.nceas.metacat.admin.upgrade.solr.SolrSchemaModificationException
-
Constructor
- SolrSchemaUpgrader - Class in edu.ucsb.nceas.metacat.admin.upgrade.solr
-
This class will overwrite the existing schema under the /solr-home/conf/schema.xml
Here is the algorithm:
1.
- SolrSchemaUpgrader() - Constructor for class edu.ucsb.nceas.metacat.admin.upgrade.solr.SolrSchemaUpgrader
-
Constructor
- sortProfiles(String) - Method in class edu.ucsb.nceas.metacat.MetacatProfiler
-
sort the profiles by "callorder", "callcount" or "total"
- SpatialDataset - Class in edu.ucsb.nceas.metacat.spatial
-
Class providing direct read/write access to the
persistent spatial cache.
- SpatialDataset() - Constructor for class edu.ucsb.nceas.metacat.spatial.SpatialDataset
-
empty constructor for SpatialDataset
- SpatialDocument - Class in edu.ucsb.nceas.metacat.spatial
-
Class representing the spatial portions of an xml document as a geotools
Feature.
- SpatialDocument(String, DBConnection) - Constructor for class edu.ucsb.nceas.metacat.spatial.SpatialDocument
-
Constructor that queries the db
- SpatialFeatureSchema - Class in edu.ucsb.nceas.metacat.spatial
-
Class representing the geotools feature schemas and file paths
for the spatial data cache.
- SpatialFeatureSchema() - Constructor for class edu.ucsb.nceas.metacat.spatial.SpatialFeatureSchema
-
empty constructor
- SpatialHarvester - Class in edu.ucsb.nceas.metacat.spatial
-
Harvests spatial data from metacat database
and saves to persistent cache
- SpatialHarvester() - Constructor for class edu.ucsb.nceas.metacat.spatial.SpatialHarvester
-
constructor to initialize db connection
- SpatialQuery - Class in edu.ucsb.nceas.metacat.spatial
-
Class to query the persistent spatial cache
and returns docids matching spatial constraints
- SpatialQuery() - Constructor for class edu.ucsb.nceas.metacat.spatial.SpatialQuery
-
empty constructor to initialize spatial query
- split(String, String, String) - Static method in class edu.ucsb.nceas.metacat.util.AuthUtil
-
Convert a delimited string to a Vector by splitting on a particular character
- SqlserverAdapter - Class in edu.ucsb.nceas.dbadapter
-
The MS SQL Server db adapter implementation.
- SqlserverAdapter() - Constructor for class edu.ucsb.nceas.dbadapter.SqlserverAdapter
-
- srid - Static variable in class edu.ucsb.nceas.metacat.spatial.SpatialFeatureSchema
-
- start - Variable in class edu.ucsb.nceas.metacat.MetacatProfiler.Profile
-
- start() - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
- startCDATA() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
SAX Handler that receives notification of the start of CDATA sections
- startCDATA() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of the start of CDATA sections
- startDocument() - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
Callback method used by the SAX Parser when beginning of the document
- startDocument() - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of beginning of the document
- startDocument() - Method in class edu.ucsb.nceas.metacat.MetacatResultSet
-
- startDTD(String, String, String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
SAX Handler that receives notification of DOCTYPE.
- startDTD(String, String, String) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of DOCTYPE.
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
Callback method used by the SAX Parser when the start tag of an
element is detected.
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.CatalogMessageHandler
-
This method starts a new vector for each updatedDocument tag.
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that is called at the start of each XML element
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
SAX Handler that is called at the start of each XML element
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
SAX Handler that is called at the start of each XML element
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.MetacatResultSet
-
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.QuerySpecification
-
callback method used by the SAX Parser when the start tag of an element
is detected.
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.replication.ReplMessageHandler
-
This method starts a new vector for each updatedDocument tag.
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.service.XMLNamespaceParser
-
SAX Handler that is called at the start of each XML element
- startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaParser
-
SAX Handler that is called at the start of each XML element
- startElementName - Variable in class edu.ucsb.nceas.metacat.SubTree
-
- startEntity(String) - Method in class edu.ucsb.nceas.metacat.accesscontrol.AccessControlList
-
SAX Handler that receives notification of the start of entities.
- startEntity(String) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that receives notification of the start of entities
- startNodeId - Variable in class edu.ucsb.nceas.metacat.SubTree
-
- startPrefixMapping(String, String) - Method in class edu.ucsb.nceas.metacat.DBSAXHandler
-
SAX Handler that is called at the start of Namespace
- startPrefixMapping(String, String) - Method in class edu.ucsb.nceas.metacat.Eml200SAXHandler
-
SAX Handler that is called at the start of Namespace
- startPrefixMapping(String, String) - Method in class edu.ucsb.nceas.metacat.Eml210SAXHandler
-
SAX Handler that is called at the start of Namespace
- startReplication(Hashtable<String, String[]>) - Method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
- STARTS_WITH - Static variable in class edu.ucsb.nceas.metacat.advancedsearch.AdvancedSearchBean
-
- startTag - Static variable in class edu.ucsb.nceas.metacat.util.ReplicationUtil
-
- startTime(String) - Method in class edu.ucsb.nceas.metacat.MetacatProfiler
-
start the timing on a profile
- stateChanged(LifecycleEvent) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
In cases where this cluster is paused, we want to
check that the local store accurately reflects the shared
SystemMetadata map
- stop() - Method in class edu.ucsb.nceas.metacat.database.DatabaseService
-
- stop() - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService
-
Stop the HazelcastService.
- stop - Variable in class edu.ucsb.nceas.metacat.MetacatProfiler.Profile
-
- stop() - Method in class edu.ucsb.nceas.metacat.properties.ConfigurableProperties
-
- stop() - Method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
- stop() - Method in class edu.ucsb.nceas.metacat.properties.SimpleProperties
-
- stop() - Method in class edu.ucsb.nceas.metacat.properties.SkinPropertyService
-
- stop() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
- stop() - Method in class edu.ucsb.nceas.metacat.scheduler.SchedulerService
-
- stop() - Method in class edu.ucsb.nceas.metacat.service.SessionService
-
- stop() - Method in class edu.ucsb.nceas.metacat.service.XMLSchemaService
-
- stop() - Method in class edu.ucsb.nceas.metacat.shared.BaseService
-
- stopAllServices() - Static method in class edu.ucsb.nceas.metacat.service.ServiceService
-
- stopReplication() - Method in class edu.ucsb.nceas.metacat.replication.ReplicationService
-
- stopTime(String) - Method in class edu.ucsb.nceas.metacat.MetacatProfiler
-
stop the timing on a profile
- store(Identifier, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.SystemMetadataMap
-
- store(Identifier, IndexEvent) - Method in class edu.ucsb.nceas.metacat.index.IndexEventMapStore
-
- storeAll(Map<Identifier, SystemMetadata>) - Method in class edu.ucsb.nceas.metacat.dataone.hazelcast.SystemMetadataMap
-
- storeAll(Map<Identifier, IndexEvent>) - Method in class edu.ucsb.nceas.metacat.index.IndexEventMapStore
-
- storeExternalDirLocation(String) - Static method in class edu.ucsb.nceas.metacat.util.SystemUtil
-
Store the location of the backup file location into a file at
//backup-location
- Stylizer - Class in edu.ucsb.nceas.metacat.advancedsearch
-
- Stylizer() - Constructor for class edu.ucsb.nceas.metacat.advancedsearch.Stylizer
-
- SUB_DOCS_PATH - Static variable in class edu.ucsb.nceas.metacat.clientview.ClientFgdcHelper
-
- SUBJECTS - Static variable in class edu.ucsb.nceas.metacat.doi.datacite.DataCiteMetadataFactory
-
- submit(Identifier, SystemMetadata, Map<String, List<Object>>, boolean) - Method in class edu.ucsb.nceas.metacat.index.MetacatSolrIndex
-
- submitDeleteTask(Identifier, SystemMetadata) - Method in class edu.ucsb.nceas.metacat.index.MetacatSolrIndex
-
Submit a deleting-index task
- SubTree - Class in edu.ucsb.nceas.metacat
-
A Class that represents an XML Subtree
- SubTree() - Constructor for class edu.ucsb.nceas.metacat.SubTree
-
Defualt constructor
- SubTree(String, String, long, long) - Constructor for class edu.ucsb.nceas.metacat.SubTree
-
Constructor of subtree
- subTreeId - Variable in class edu.ucsb.nceas.metacat.SubTree
-
- subversions - Variable in class edu.ucsb.nceas.metacat.Version
-
- sync(List<String>) - Method in class edu.ucsb.nceas.metacat.dataone.SyncAccessPolicy
-
Convenience function that accepts a list of guids to sync
- SyncAccessPolicy - Class in edu.ucsb.nceas.metacat.dataone
-
- SyncAccessPolicy() - Constructor for class edu.ucsb.nceas.metacat.dataone.SyncAccessPolicy
-
- syncAll() - Method in class edu.ucsb.nceas.metacat.dataone.SyncAccessPolicy
-
For all guids for which current MN is authoritative, check that access
policy is synced with CN.
- synchronizationFailed(Session, SynchronizationFailed) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
A callback method used by a CN to indicate to a MN that it cannot
complete synchronization of the science metadata identified by pid.
- synchronizationFailed(SynchronizationFailed) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- synchronizationFailed(Session, SynchronizationFailed) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- synchronize(Session, Identifier) - Method in class edu.ucsb.nceas.metacat.dataone.CNodeService
-
- syncToSettings() - Static method in class edu.ucsb.nceas.metacat.properties.PropertyService
-
The properties on the Setting class isn't synchronized with the change the Metacat properties file.
- systemid - Variable in class edu.ucsb.nceas.metacat.DBSAXHandler
-
- SYSTEMID - Static variable in class edu.ucsb.nceas.metacat.DocumentImpl
-
- systemMetadataChanged(Session, Identifier, long, Date) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
A method to notify the Member Node that the authoritative copy of
system metadata on the Coordinating Nodes has changed.
- systemMetadataChanged(boolean, Session, Identifier, long, Date) - Method in class edu.ucsb.nceas.metacat.dataone.MNodeService
-
A method to notify the Member Node that the authoritative copy of
system metadata on the Coordinating Nodes has changed.
- systemMetadataChanged(Identifier, long, Date) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
- systemMetadataChanged(Session, Identifier, long, Date) - Method in class edu.ucsb.nceas.metacat.dataone.v1.MNodeService
-
Deprecated.
- SystemMetadataFactory - Class in edu.ucsb.nceas.metacat.dataone
-
- SystemMetadataFactory() - Constructor for class edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory
-
- SystemMetadataMap - Class in edu.ucsb.nceas.metacat.dataone.hazelcast
-
Storage implementation for Hazelcast System Metadata
- SystemMetadataMap() - Constructor for class edu.ucsb.nceas.metacat.dataone.hazelcast.SystemMetadataMap
-
- systemMetadataPIDExists(Identifier) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Determine if the specified identifier object exists or not.
- systemMetadataPIDExists(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
- systemMetadataSIDExists(Identifier) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Check if the specified sid object exists on the serial id field on the system metadata table
- systemMetadataSIDExists(String) - Method in class edu.ucsb.nceas.metacat.IdentifierManager
-
Check if the specified sid exists on the serial id field on the system metadata table
- SystemUtil - Class in edu.ucsb.nceas.metacat.util
-