/** * '$RCSfile$' * Copyright: 2013 Regents of the University of California and the * National Center for Ecological Analysis and Synthesis * * '$Author$' * '$Date$' * '$Revision$' * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */ package edu.ucsb.nceas.metacat.admin.upgrade; import java.util.Collections; import java.util.List; import java.util.ArrayList; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.dataone.service.types.v1.Identifier; import org.dataone.service.types.v2.Node; import org.dataone.service.types.v2.SystemMetadata; import edu.ucsb.nceas.metacat.DocumentImpl; import edu.ucsb.nceas.metacat.IdentifierManager; import edu.ucsb.nceas.metacat.admin.AdminException; import edu.ucsb.nceas.metacat.dataone.DOIService; import edu.ucsb.nceas.metacat.dataone.MNodeService; import edu.ucsb.nceas.metacat.dataone.hazelcast.HazelcastService; import edu.ucsb.nceas.metacat.util.DocumentUtil; /** * Updates existing DOI registrations for EML versions * @author leinfelder, walker * */ public class UpdateDOI implements UpgradeUtilityInterface { private static Log log = LogFactory.getLog(UpdateDOI.class); private int serverLocation = 1; private String nodeId = null; private String DOISCHEME = "doi:"; /** * Public constructor * @throws Exception */ public UpdateDOI() throws Exception{ Node node = MNodeService.getInstance(null).getCapabilities(); nodeId = node.getIdentifier().getValue(); } public int getServerLocation() { return serverLocation; } public void setServerLocation(int serverLocation) { this.serverLocation = serverLocation; } /** * Update the registration of a list of DOIs * @param identifiers - DOIs to update */ private void updateDOIRegistration(List identifiers) { for (String pid: identifiers) { try { //Create an identifier and retrieve the SystemMetadata for this guid Identifier identifier = new Identifier(); identifier.setValue(pid); SystemMetadata sysMeta = HazelcastService.getInstance().getSystemMetadataMap().get(identifier); if(sysMeta == null) { //The identifier can be a sid, so the sysMeta can be null. we need to check if it is a sid. Identifier sid = new Identifier(); sid.setValue(pid); Identifier head = IdentifierManager.getInstance().getHeadPID(sid); if(head != null) { sysMeta= HazelcastService.getInstance().getSystemMetadataMap().get(head); } } //Update the registration if(sysMeta != null) { DOIService.getInstance().registerDOI(sysMeta); } } catch (Exception e) { // what to do? nothing e.printStackTrace(); continue; } } } /** * Update the DOI registration of all ids in this server with EML formatIds */ public boolean upgrade() throws AdminException { boolean success = true; try { // get only local ids for this server List idList = null; idList = IdentifierManager.getInstance().getGUIDs(DocumentImpl.EML2_0_0NAMESPACE, nodeId, DOISCHEME); //Collections.sort(idList); updateDOIRegistration(idList); idList = IdentifierManager.getInstance().getGUIDs(DocumentImpl.EML2_0_1NAMESPACE, nodeId, DOISCHEME); //Collections.sort(idList); updateDOIRegistration(idList); idList = IdentifierManager.getInstance().getGUIDs(DocumentImpl.EML2_1_0NAMESPACE, nodeId, DOISCHEME); //Collections.sort(idList); updateDOIRegistration(idList); idList = IdentifierManager.getInstance().getGUIDs(DocumentImpl.EML2_1_1NAMESPACE, nodeId, DOISCHEME); //Collections.sort(idList); updateDOIRegistration(idList); } catch (Exception e) { String msg = "Problem updating DOIs: " + e.getMessage(); log.error(msg, e); success = false; throw new AdminException(msg); } return success; } /** * Update the registration of all DOIs with the specified guids in this server * @param ids - a List of DOIs to update */ public boolean upgradeById(List ids) throws AdminException { boolean success = true; try{ updateDOIRegistration(ids); } catch (Exception e) { String msg = "Problem updating DOIs: " + e.getMessage(); log.error(msg, e); success = false; throw new AdminException(msg); } return success; } /** * Update the registration of all DOIs in this server with the specified formatId * @param formatIds - a List of formatIDs used to filter DOI selection */ public boolean upgradeByFormatId(List formatIds) throws AdminException { boolean success = true; try{ for (String formatId: formatIds) { //Get all the docids with this formatId List idList = IdentifierManager.getInstance().getGUIDs(formatId, nodeId, DOISCHEME); //Update the registration for all these guids Collections.sort(idList); updateDOIRegistration(idList); } } catch (Exception e) { String msg = "Problem updating DOIs: " + e.getMessage(); log.error(msg, e); success = false; throw new AdminException(msg); } return success; } }