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<h1 title="Package" class="title">Package edu.ucsb.nceas.metacat</h1>
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<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Interface Summary table, listing interfaces, and an explanation">
<caption><span>Interface Summary</span><span class="tabEnd"> </span></caption>
<tr>
<th class="colFirst" scope="col">Interface</th>
<th class="colLast" scope="col">Description</th>
</tr>
<tbody>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthInterface.html" title="interface in edu.ucsb.nceas.metacat">AuthInterface</a></td>
<td class="colLast">
<div class="block">An interface representing the methods that should be
implemented by an authentication service.</div>
</td>
</tr>
</tbody>
</table>
</li>
<li class="blockList">
<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
<caption><span>Class Summary</span><span class="tabEnd"> </span></caption>
<tr>
<th class="colFirst" scope="col">Class</th>
<th class="colLast" scope="col">Description</th>
</tr>
<tbody>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AccessionNumber.html" title="class in edu.ucsb.nceas.metacat">AccessionNumber</a></td>
<td class="colLast">
<div class="block">(on insert of XML document)
Generates a unique Accession Number or if provided check it
for uniqueness and register it into the db connection
(on update or delete of XML document)
Check for existance of provided Accession Number</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/ArchiveHandler.html" title="class in edu.ucsb.nceas.metacat">ArchiveHandler</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AssociateAccessPolicy.html" title="class in edu.ucsb.nceas.metacat">AssociateAccessPolicy</a></td>
<td class="colLast">
<div class="block">This class is in order to fix a problem.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthLdap.html" title="class in edu.ucsb.nceas.metacat">AuthLdap</a></td>
<td class="colLast">
<div class="block">An implementation of the AuthInterface interface that allows Metacat to use
the LDAP protocol for directory services.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthSession.html" title="class in edu.ucsb.nceas.metacat">AuthSession</a></td>
<td class="colLast">
<div class="block">A Class that implements session tracking for MetaCatServlet users.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthStub.html" title="class in edu.ucsb.nceas.metacat">AuthStub</a></td>
<td class="colLast">
<div class="block">An implementation of the AuthInterface interface that
allows Metacat to use the LDAP protocol for directory services.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthTest.html" title="class in edu.ucsb.nceas.metacat">AuthTest</a></td>
<td class="colLast">
<div class="block">An implementation of the AuthInterface interface that
allows Metacat to use the LDAP protocol for directory services.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/BasicNode.html" title="class in edu.ucsb.nceas.metacat">BasicNode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML node and its contents</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/CatalogMessageHandler.html" title="class in edu.ucsb.nceas.metacat">CatalogMessageHandler</a></td>
<td class="colLast">
<div class="block">A Class implementing callback bethods for the SAX parser to
call when processing the XML messages from the replication handler</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/CommentNode.html" title="class in edu.ucsb.nceas.metacat">CommentNode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML Comment node and its contents,</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/ContentTypeProvider.html" title="class in edu.ucsb.nceas.metacat">ContentTypeProvider</a></td>
<td class="colLast">
<div class="block">This class will figure out which content type it is for a given data file.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBDTDHandler.html" title="class in edu.ucsb.nceas.metacat">DBDTDHandler</a></td>
<td class="colLast">
<div class="block">A database aware Class implementing DTDHandler interface for the SAX
parser to call when processing the XML stream and intercepting notations
and unparsed entities</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBEntityResolver.html" title="class in edu.ucsb.nceas.metacat">DBEntityResolver</a></td>
<td class="colLast">
<div class="block">A database aware Class implementing EntityResolver interface for the SAX
parser to call when processing the XML stream and intercepting any
external entities (including the external DTD subset and external
parameter entities, if any) before including them.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBQuery.html" title="class in edu.ucsb.nceas.metacat">DBQuery</a></td>
<td class="colLast">
<div class="block">A Class that searches a relational DB for elements and attributes that have
free text matches a query string, or structured query matches to a path
specified node in the XML hierarchy.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBSAXHandler.html" title="class in edu.ucsb.nceas.metacat">DBSAXHandler</a></td>
<td class="colLast">
<div class="block">A database aware Class implementing callback bethods for the SAX parser to
call when processing the XML stream and generating events.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBSAXNode.html" title="class in edu.ucsb.nceas.metacat">DBSAXNode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML node and its contents and
can write its own representation to a database connection</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBSimpleQuery.html" title="class in edu.ucsb.nceas.metacat">DBSimpleQuery</a></td>
<td class="colLast">
<div class="block">A Class that searches a relational DB for elements and attributes that
have free text matches to the query string.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBTransform.html" title="class in edu.ucsb.nceas.metacat">DBTransform</a></td>
<td class="colLast">
<div class="block">A Class that transforms XML documents utitlizing XSL style sheets
Building a transformer from the .xsl is expensive, so Templates are used
as an intermediate construct to allow lightweight construction of Transformers.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBUtil.html" title="class in edu.ucsb.nceas.metacat">DBUtil</a></td>
<td class="colLast">
<div class="block">A suite of utility classes for querying DB</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DBValidate.html" title="class in edu.ucsb.nceas.metacat">DBValidate</a></td>
<td class="colLast">
<div class="block">Name: DBValidate.java
Purpose: A Class that validates XML documents
This class is designed to be parser independent
i.e.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DistributionSection.html" title="class in edu.ucsb.nceas.metacat">DistributionSection</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML access rule.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DocumentIdentifier.html" title="class in edu.ucsb.nceas.metacat">DocumentIdentifier</a></td>
<td class="colLast">
<div class="block">A class to parse document ids
The docid is of the form siteCode.uniqueId.rev</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DocumentIdQuery.html" title="class in edu.ucsb.nceas.metacat">DocumentIdQuery</a></td>
<td class="colLast">
<div class="block">Generate a pathquery document representing a metacat query for a list of
document IDs.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DocumentImpl.html" title="class in edu.ucsb.nceas.metacat">DocumentImpl</a></td>
<td class="colLast">
<div class="block">A class that represents an XML document.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/DocumentImplWrapper.html" title="class in edu.ucsb.nceas.metacat">DocumentImplWrapper</a></td>
<td class="colLast">
<div class="block">This class a wrapper class for documentimpl for insert or update.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/ElementNode.html" title="class in edu.ucsb.nceas.metacat">ElementNode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML element and its contents,
and can build itself from a database connection</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/Eml200SAXHandler.html" title="class in edu.ucsb.nceas.metacat">Eml200SAXHandler</a></td>
<td class="colLast">
<div class="block">A database aware Class implementing callback methods for the SAX parser to
call when processing the XML stream and generating events
Here is the rules for user which has write permission in top level access
rules(he can update metadata but can't update access module) try to update
a document:
1.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/EML201DocumentCorrector.html" title="class in edu.ucsb.nceas.metacat">EML201DocumentCorrector</a></td>
<td class="colLast">
<div class="block">Before Metacat 1.8.1 release, Metacat uses the eml201 schema with the tag
RELEASE_EML_2_0_1_UPDATE_5.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/Eml210SAXHandler.html" title="class in edu.ucsb.nceas.metacat">Eml210SAXHandler</a></td>
<td class="colLast">
<div class="block">A database aware Class implementing callback methods for the SAX parser to
call when processing the XML stream and generating events</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/EventLog.html" title="class in edu.ucsb.nceas.metacat">EventLog</a></td>
<td class="colLast">
<div class="block">EventLog is used to intialize and store a log of events that occur in an
application.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/EventLogData.html" title="class in edu.ucsb.nceas.metacat">EventLogData</a></td>
<td class="colLast">
<div class="block">A data structure holding the information to be logged about an event.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/EventLogFilter.html" title="class in edu.ucsb.nceas.metacat">EventLogFilter</a></td>
<td class="colLast">
<div class="block">This class represents a filter to prevent the events generated by some ip addresses and subjects
to be logged into db</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/IdentifierManager.html" title="class in edu.ucsb.nceas.metacat">IdentifierManager</a></td>
<td class="colLast">
<div class="block">Manage the relationship between Metacat local identifiers (LocalIDs) that are
codified as the (docid, rev) pair with globally unique string identifiers
(GUIDs) that are opaque strings.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/IndexingQueue.html" title="class in edu.ucsb.nceas.metacat">IndexingQueue</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/IndexingTimerTask.html" title="class in edu.ucsb.nceas.metacat">IndexingTimerTask</a></td>
<td class="colLast"> </td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetacatHandler.html" title="class in edu.ucsb.nceas.metacat">MetacatHandler</a></td>
<td class="colLast">
<div class="block">General entry point for the Metacat server which is called from various
mechanisms such as the standard MetacatServlet class and the various web
service servlets such as RestServlet class.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetacatProfiler.html" title="class in edu.ucsb.nceas.metacat">MetacatProfiler</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetacatResultSet.html" title="class in edu.ucsb.nceas.metacat">MetacatResultSet</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetaCatServlet.html" title="class in edu.ucsb.nceas.metacat">MetaCatServlet</a></td>
<td class="colLast">
<div class="block">A metadata catalog server implemented as a Java Servlet
Valid actions are:
action=login
username
password
qformat
action=logout
qformat
action=query -- query the values of all elements and attributes and return a result set of nodes
meta_file_id --
returndoctype --
filterdoctype --
returnfield --
owner --
site --
operator --
casesensitive --
searchmode --
anyfield --
action=spatial_query -- run a spatial query.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetacatURL.html" title="class in edu.ucsb.nceas.metacat">MetacatURL</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/MetacatVersion.html" title="class in edu.ucsb.nceas.metacat">MetacatVersion</a></td>
<td class="colLast"> </td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/NodeComparator.html" title="class in edu.ucsb.nceas.metacat">NodeComparator</a></td>
<td class="colLast">
<div class="block">A utility class that sorts two node records.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/NodeRecord.html" title="class in edu.ucsb.nceas.metacat">NodeRecord</a></td>
<td class="colLast">
<div class="block">A utility class that encapsulates a node and its data</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/PathIndexEntry.html" title="class in edu.ucsb.nceas.metacat">PathIndexEntry</a></td>
<td class="colLast">
<div class="block">PathIndexEntry contains all of the data fields needed to insert an path into
the xml_index table or the xml_path_index table, depending on which
constructor is used.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/PermissionController.html" title="class in edu.ucsb.nceas.metacat">PermissionController</a></td>
<td class="colLast"> </td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/PINode.html" title="class in edu.ucsb.nceas.metacat">PINode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML PI node and its contents,</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/QueryGroup.html" title="class in edu.ucsb.nceas.metacat">QueryGroup</a></td>
<td class="colLast">
<div class="block">a utility class that represents a group of terms in a query</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/QueryResultTableBuilder.html" title="class in edu.ucsb.nceas.metacat">QueryResultTableBuilder</a></td>
<td class="colLast">
<div class="block">QueryResutlTableBuilder is class to build xml_queryresult table during metacat initialization.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/QuerySpecification.html" title="class in edu.ucsb.nceas.metacat">QuerySpecification</a></td>
<td class="colLast">
<div class="block">A Class that represents a structured query, and can be constructed from an
XML serialization conforming to</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/QueryTerm.html" title="class in edu.ucsb.nceas.metacat">QueryTerm</a></td>
<td class="colLast">
<div class="block">a utility class that represents a single term in a query</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/ReadOnlyChecker.html" title="class in edu.ucsb.nceas.metacat">ReadOnlyChecker</a></td>
<td class="colLast">
<div class="block">A checker to determine if the Metacat is in the read-only mode by checking
the property of database.readOnly.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/RelationHandler.html" title="class in edu.ucsb.nceas.metacat">RelationHandler</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/RemoteDocument.html" title="class in edu.ucsb.nceas.metacat">RemoteDocument</a></td>
<td class="colLast">
<div class="block">A class represents a document in remote metacat server.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/SchemaLocationResolver.html" title="class in edu.ucsb.nceas.metacat">SchemaLocationResolver</a></td>
<td class="colLast">
<div class="block">A database aware Class to handle schema location.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/Sitemap.html" title="class in edu.ucsb.nceas.metacat">Sitemap</a></td>
<td class="colLast">
<div class="block">A Sitemap represents a document that lists all of the content of the Metacat
server for use by harvesting spiders that wish to index the contents of the
Metacat site.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/SubTree.html" title="class in edu.ucsb.nceas.metacat">SubTree</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML Subtree</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/TextNode.html" title="class in edu.ucsb.nceas.metacat">TextNode</a></td>
<td class="colLast">
<div class="block">A Class that represents an XML Text node and its contents,</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/Version.html" title="class in edu.ucsb.nceas.metacat">Version</a></td>
<td class="colLast"> </td>
</tr>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/XMLQueryresultAccess.html" title="class in edu.ucsb.nceas.metacat">XMLQueryresultAccess</a></td>
<td class="colLast"> </td>
</tr>
</tbody>
</table>
</li>
<li class="blockList">
<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Exception Summary table, listing exceptions, and an explanation">
<caption><span>Exception Summary</span><span class="tabEnd"> </span></caption>
<tr>
<th class="colFirst" scope="col">Exception</th>
<th class="colLast" scope="col">Description</th>
</tr>
<tbody>
<tr class="altColor">
<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AccessionNumberException.html" title="class in edu.ucsb.nceas.metacat">AccessionNumberException</a></td>
<td class="colLast">
<div class="block">Exception thrown when an error occurs because an AccessionNumber was
invalid or used incorrectly.</div>
</td>
</tr>
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<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/AuthTLSException.html" title="class in edu.ucsb.nceas.metacat">AuthTLSException</a></td>
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<div class="block">Exception thrown when an error occurs in a configuration administrative
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<div class="block">Exception thrown when an error occurs in a configuration administrative
class</div>
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<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/McdbDocNotFoundException.html" title="class in edu.ucsb.nceas.metacat">McdbDocNotFoundException</a></td>
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<div class="block">Exception thrown when an error occurs because a document with a
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<td class="colFirst"><a href="../../../../edu/ucsb/nceas/metacat/McdbException.html" title="class in edu.ucsb.nceas.metacat">McdbException</a></td>
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<div class="block">Exception thrown when an error occurs because a problem occurred in
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