A B C D E F G H I J L M N O P R S T U V W X

A

AbstractPostProcessor - Class in org.dataone.cn.indexer.parser

User: Porter

AbstractPostProcessor() - Constructor for class org.dataone.cn.indexer.parser.AbstractPostProcessor

addDocumentedBy(String) - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

addDocuments(String) - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

addField(SolrElementField) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

addGeohashLevelField(int, String, String, List<SolrElementField>) - Method in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

AggregateSolrField - Class in org.dataone.cn.indexer.parser

ISolrField implementation that aggregates multiple other SolrField instance configurations into a new field value.

AggregateSolrField() - Constructor for class org.dataone.cn.indexer.parser.AggregateSolrField

allowedValue(String) - Method in class org.dataone.cn.indexer.parser.SolrField

AnnotatorSubprocessor - Class in org.dataone.cn.indexer.annotation

The intent of this subprocessor is to fetch annotations about the given documents as housed in an external store and add them to the solr index.

AnnotatorSubprocessor() - Constructor for class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

App - Class in org.dataone.cn.index

App() - Constructor for class org.dataone.cn.index.App

assumeDate - Variable in class org.dataone.cn.indexer.convert.SolrDateConverter

ATTRIBUTE_ABOUT - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

ATTRIBUTE_NAME - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

ATTRIBUTE_RESOURCE - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

B

BaseDocumentDeleteSubprocessor - Class in org.dataone.cn.indexer.parser

BaseDocumentDeleteSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

BaseReprocessSubprocessor - Class in org.dataone.cn.indexer.parser

BaseReprocessSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

BaseXPathDocumentSubprocessor - Class in org.dataone.cn.indexer.parser

Base functionality for document processors.

BaseXPathDocumentSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

BEGIN_FIELD_NAME - Static variable in class org.dataone.cn.indexer.parser.TemporalPeriodSolrField

BooleanMatchConverter - Class in org.dataone.cn.indexer.convert

Compares values and returns "true" or "false" if value matches expected

BooleanMatchConverter(String) - Constructor for class org.dataone.cn.indexer.convert.BooleanMatchConverter

boxParsingUtility - Static variable in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

boxXPath - Variable in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

boxXPathExpression - Variable in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

buildResourceMap(String) - Static method in class org.dataone.cn.indexer.resourcemap.ResourceMapFactory

buildResourceMap(Document) - Static method in class org.dataone.cn.indexer.resourcemap.ResourceMapFactory

buildResourceMap(String, IndexVisibilityDelegate) - Static method in class org.dataone.cn.indexer.resourcemap.ResourceMapFactory

C

canProcess(String) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

Returns true if subprocessor should be run against object

canProcess(String) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

Returns true if subprocessor should be run against object

canProcess(String) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

Returns true if subprocessor should be run against object

canProcess(String) - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

canProcess(String) - Method in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

canProcess(String) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

Returns true if subprocessor should be run against object

canProcess(String) - Method in interface org.dataone.cn.indexer.parser.IDocumentSubprocessor

Determines if subprocessor should be run on document

canProcess(String) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Returns true if subprocessor should be run against object

canProcess(String) - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

combineNodes - Variable in class org.dataone.cn.indexer.parser.SolrField

CommonRootSolrField - Class in org.dataone.cn.indexer.parser

A complex data value mining SolrField.

CommonRootSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.CommonRootSolrField

consumeContent() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

convert(String) - Method in class org.dataone.cn.indexer.convert.BooleanMatchConverter

convert(String) - Method in class org.dataone.cn.indexer.convert.FgdcDateConverter

convert(String) - Method in class org.dataone.cn.indexer.convert.FormatIdToFormatTypeConverter

convert(String) - Method in class org.dataone.cn.indexer.convert.GeohashConverter

convert(String) - Method in interface org.dataone.cn.indexer.convert.IConverter

Method to process or format data *

convert(String) - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeConverter

convert(String) - Method in class org.dataone.cn.indexer.convert.SolrDateConverter

Converts date to solr consumable format.

convert(String) - Method in class org.dataone.cn.indexer.convert.SolrLatitudeConverter

Given a string representation of a potential latitude value, ensure it is a valid floating point number and check the range.

convert(String) - Method in class org.dataone.cn.indexer.convert.SolrLongitudeConverter

Given a string representation of a potential longitude value, ensure it is a valid floating point number and check the range.

converter - Variable in class org.dataone.cn.indexer.parser.DerivedSolrField

converter - Variable in class org.dataone.cn.indexer.parser.SolrField

copy(IndexTask) - Method in class org.dataone.cn.index.task.ResourceMapIndexTask

Copy the fields of the given task to this object

D

DataCiteSpatialBoxBoundingCoordinatesSolrField - Class in org.dataone.cn.indexer.parser

DataCiteSpatialBoxBoundingCoordinatesSolrField() - Constructor for class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

DataCiteSpatialBoxGeohashSolrField - Class in org.dataone.cn.indexer.parser

DataCiteSpatialBoxGeohashSolrField() - Constructor for class org.dataone.cn.indexer.parser.DataCiteSpatialBoxGeohashSolrField

dateSysmModified - Variable in class org.dataone.cn.index.IndexingTask

DC_BOX_EAST_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

DC_BOX_NORTH_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

DC_BOX_SOUTH_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

DC_BOX_WEST_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

DecadePostProcessor - Class in org.dataone.cn.indexer.parser

User: Porter

DecadePostProcessor() - Constructor for class org.dataone.cn.indexer.parser.DecadePostProcessor

dedupe - Variable in class org.dataone.cn.indexer.parser.SolrField

defaultValue - Variable in class org.dataone.cn.indexer.parser.SolrField

DerivedSolrField - Class in org.dataone.cn.indexer.parser

Derive a Solr field value based on other values in the document.

DerivedSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.DerivedSolrField

destoryDataset(Dataset) - Method in class org.dataone.cn.indexer.annotation.TripleStoreService

Destroy the given dataset (delete the backup store)

destroy() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorDaemon

disallowedValues - Variable in class org.dataone.cn.indexer.parser.SolrField

DOCUMENT_PARSERS - Static variable in class org.dataone.cn.index.App

documentExists(Identifier) - Method in class org.dataone.cn.index.processor.IndexVisibilityDelegateHazelcastImpl

documentExists(Identifier) - Method in interface org.dataone.cn.indexer.resourcemap.IndexVisibilityDelegate

DublinCoreOAIRelationSolrField - Class in org.dataone.cn.indexer.parser

This class represents the parser to handle the "relation" element on the DublinCoreOAI document

DublinCoreOAIRelationSolrField() - Constructor for class org.dataone.cn.indexer.parser.DublinCoreOAIRelationSolrField

DublinCoreOAIRelationSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.DublinCoreOAIRelationSolrField

Constructor

DublinCoreSpatialBoxBoundingCoordinatesSolrField - Class in org.dataone.cn.indexer.parser

DublinCoreSpatialBoxBoundingCoordinatesSolrField() - Constructor for class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxBoundingCoordinatesSolrField

DublinCoreSpatialBoxBoundingCoordinatesSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxBoundingCoordinatesSolrField

DublinCoreSpatialBoxGeohashSolrField - Class in org.dataone.cn.indexer.parser

DublinCoreSpatialBoxGeohashSolrField() - Constructor for class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxGeohashSolrField

DublinCoreSpatialBoxGeohashSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxGeohashSolrField

E

ELEMENT_DOC_CLOSE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrDoc

ELEMENT_DOC_OPEN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrDoc

ELEMENT_FIELD_CLOSE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

ELEMENT_FIELD_OPEN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

ElementCombiner - Class in org.dataone.cn.indexer.parser.utility

A complex data value mining SolrField.

ElementCombiner() - Constructor for class org.dataone.cn.indexer.parser.utility.ElementCombiner

EmlAnnotationSubprocessor - Class in org.dataone.cn.indexer.annotation

A subprocessor that extracts semantic annotations from EML records and materializes the superclass hierarchy for all extracted concepts using a pre-defined set of ontologies.

EmlAnnotationSubprocessor() - Constructor for class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

END_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

END_FIELD_NAME - Static variable in class org.dataone.cn.indexer.parser.TemporalPeriodSolrField

escapeQueryChars(String) - Static method in class org.dataone.cn.indexer.solrhttp.HTTPService

Borrowed from http://www.docjar.com/html/api/org/apache/solr/client/solrj/ util/ClientUtils.java.html

execute(JobExecutionContext) - Method in class org.dataone.cn.index.processor.IndexTaskProcessorJob

expandConcepts(String) - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

expandConcepts(String) - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

extractDublinCoreDirectionalValue(String, String) - Method in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

extractNodeValue(Document, XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

extractTextValue(Document, XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Returns the text from the given doc, extracted with the given xPathExpression.

F

FgdcDateConverter - Class in org.dataone.cn.indexer.convert

FgdcDateConverter() - Constructor for class org.dataone.cn.indexer.convert.FgdcDateConverter

FIELD_ANNOTATED_BY - Static variable in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

FIELD_ANNOTATES - Static variable in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

FIELD_ANNOTATION - Static variable in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

FIELD_ANNOTATION - Static variable in class org.dataone.cn.indexer.annotation.OntologyModelService

FIELD_AUTH_MN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_BEGIN_DATE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_BLOCKED_REP_MN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_CHANGEPERMISSION - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_CHECKSUM - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_CHECKSUMALGORITHM - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_COMMENT - Static variable in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

FIELD_DATEMODIFIED - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_DATEUPLOADED - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_DECADE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_DOCUMENTS - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_END_DATE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_EXECUTEPERMISSION - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_ID - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_ISDOCUMENTEDBY - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_ISPUBLIC - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_N_REPLICAS - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_OBJECTFORMAT - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_OBJECTFORMATTYPE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_OBSOLETED_BY - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_OBSOLETES - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_ORIGIN_MN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_PREF_REP_MN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_READPERMISSION - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_REP_ALLOWED - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_REPLICA_MN - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_RESOURCEMAP - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_RIGHTSHOLDER - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_SERIES_ID - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_SIZE - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_SUBMITTER - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FIELD_WRITEPERMISSION - Static variable in class org.dataone.cn.indexer.solrhttp.SolrElementField

FilterCommonRootSolrField - Class in org.dataone.cn.indexer.parser

A complex data value mining SolrField.

FilterCommonRootSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.FilterCommonRootSolrField

FilterGroupProcessor - Class in org.dataone.cn.indexer.parser.utility

Assemble a query string based on a set of filters in a DataONE collection document.

FilterGroupProcessor() - Constructor for class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

FilterProcessor - Class in org.dataone.cn.indexer.parser.utility

For each matching 'filter' element in a document, build a query term from it.

FilterProcessor() - Constructor for class org.dataone.cn.indexer.parser.utility.FilterProcessor

FilterRootElement - Class in org.dataone.cn.indexer.parser.utility

Assembled a query string based on a set of filters in a DataONE collection document.

FilterRootElement() - Constructor for class org.dataone.cn.indexer.parser.utility.FilterRootElement

fmtid - Variable in class org.dataone.cn.index.IndexingTask

ForesiteResourceEntry - Class in org.dataone.cn.indexer.resourcemap

ForesiteResourceEntry(String, ForesiteResourceMap) - Constructor for class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

Public constructor

ForesiteResourceMap - Class in org.dataone.cn.indexer.resourcemap

ForesiteResourceMap(String) - Constructor for class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

ForesiteResourceMap(Document) - Constructor for class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

ForesiteResourceMap(String, IndexVisibilityDelegate) - Constructor for class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

Constructor for testing, allows test class to override the index visibility delegate object.

formatDate(String, String) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Converts a dateString to a valid solr consumable format.

FormatIdToFormatTypeConverter - Class in org.dataone.cn.indexer.convert

FormatIdToFormatTypeConverter() - Constructor for class org.dataone.cn.indexer.convert.FormatIdToFormatTypeConverter

FullTextSolrField - Class in org.dataone.cn.indexer.parser

Simple extension of SolrField.

FullTextSolrField(String, String) - Constructor for class org.dataone.cn.indexer.parser.FullTextSolrField

G

generateXmlDocument(InputStream) - Static method in class org.dataone.cn.indexer.XmlDocumentUtility

GEOHASH_LEVEL_1_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_2_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_3_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_4_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_5_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_6_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_7_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_8_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GEOHASH_LEVEL_9_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

GeohashConverter - Class in org.dataone.cn.indexer.convert

Convert latitude, longitude coordinates of a rectangle to the geohash of the center of the rectangle.

GeohashConverter() - Constructor for class org.dataone.cn.indexer.convert.GeohashConverter

getAbout() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getAllDocumentIDs() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

getAllDocumentIDs() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceMap

getAllDocumentIDs() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

getAllFieldValues(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getAltEntryList() - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

getBase() - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

getBase() - Method in interface org.dataone.cn.indexer.parser.ISolrDatasetField

getBaseURI() - Method in class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

getBoxXPath() - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

getCatalogQuery() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the 'catalogQuery' portion of a query filter

getClient() - Method in class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

getCombineDelimiter() - Method in class org.dataone.cn.indexer.parser.SolrField

If set results are concatenated (see SolrField.isCombineNodes()), this returns the delimiter used between items in the set.

getConcatValues() - Method in class org.dataone.cn.indexer.annotation.SparqlField

getContains() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

getContains() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceMap

getContains() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

getContent() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

getContentEncoding() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

Content-Type: text/xml; charset=

getContentLength() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

Content length is unknown always returns -1

getContentType() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

Default ContentType is UTF-8

getContext() - Method in class org.dataone.cn.index.App

getConverter() - Method in class org.dataone.cn.indexer.annotation.SparqlField

Get the converter

getConverter() - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

Get the method that is used to convert this value to a form that will be stored in Solr.

getConverter() - Method in class org.dataone.cn.indexer.parser.SolrField

getDataset() - Method in class org.dataone.cn.indexer.annotation.TripleStoreService

getDefaults() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get default filter element values

getDefaultValue() - Method in class org.dataone.cn.indexer.parser.SolrField

getDeleteSubprocessors() - Method in class org.dataone.cn.indexer.SolrIndexService

getDelimiter() - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

getDelimiter() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the token delimeter used to separate values

getDelimiter() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the delimeter used to separate string tokens

getDelimiter() - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

getDelimiter() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getDisallwedValues() - Method in class org.dataone.cn.indexer.parser.SolrField

getDocList() - Method in class org.dataone.cn.indexer.solrhttp.SolrElementAdd

getDocument(String) - Method in interface org.dataone.cn.indexer.parser.IDocumentProvider

getDocument(String) - Method in class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

getDocumentBuilder() - Method in class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

getDocumentById(String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getDocumentBySeriesId(String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

Gets a single solr document that is at the top of the version chain for the given seriesId

getDocumentedBy() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

getDocumentedBy() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

getDocumentedBy() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getDocuments() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

getDocuments() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

getDocuments() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getDocumentsByField(String, List<String>, String, boolean) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getDocumentsById(String, List<String>) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

Return the SOLR records for the specified PIDs

getDocumentsByResourceMap(String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getDocumentsByResourceMapFieldAndDocumentsField(String, String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getDocumentsByResourceMapFieldAndIsDocumentedByField(String, String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getElements() - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

getElementValues(Dataset, boolean) - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

Retrieve the component values from the document that will be used to construct a new value.

getEscapeSpecialChars() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the setting that determines if special characters should be escaped in this filter value

getExecutorService() - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Not sure if this is/should be used outside the class...

getField(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getFieldList() - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

getFieldList() - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

getFieldList() - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

getFieldList() - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

getFieldList() - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

getFieldList() - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

getFieldList() - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Get the list of the Solr field names the subprocessor can handle

getFieldList() - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getFields(byte[], String) - Method in class org.dataone.cn.indexer.annotation.SparqlField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.CommonRootSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxGeohashSolrField

getFields(Dataset) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

Get the field values, which could be multiple values

getFields(byte[], String) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.DublinCoreOAIRelationSolrField

Returns one or more elements of a single SOLR record.

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxBoundingCoordinatesSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.DublinCoreSpatialBoxGeohashSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.FilterCommonRootSolrField

Prepare a Solr fields by extracting information from an input XML document, using the document processor configured by Spring context files

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.FullTextSolrField

getFields(byte[], String) - Method in interface org.dataone.cn.indexer.parser.ISolrDataField

Method for extracting data from document

getFields(Dataset) - Method in interface org.dataone.cn.indexer.parser.ISolrDatasetField

getFields(Document, String) - Method in interface org.dataone.cn.indexer.parser.ISolrField

Method for extracting data from document via XPath or other means.

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.ResolveSolrField

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.SolrField

Returns one or more elements of a single SOLR record.

getFields(Document, String) - Method in class org.dataone.cn.indexer.parser.TemporalPeriodSolrField

getFieldsToMerge() - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

getFieldsToMerge() - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

getFieldsToMerge() - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

getFieldsToMerge() - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

getFieldValue(String, String) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Extracts the value for the fieldName from the text.

getFilterGroup() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get defined filter group processor

getFilterGroupValue(Object, List<FilterProcessor>, FilterGroupProcessor, String, String, String) - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get the document processor values for the document or node

getFilters() - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get all defined filter processors

getFilters() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get all defined filter processors

getFilterValue(Node) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Convert an XML '' entry into a Solr query string.

getFirstFieldValue(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getFormattedEndDate(String, String) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Returns a formatted end date value for the given text.

getFormattedStartDate(String, String) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Returns a formatted start date value for the given text.

getFutureQueue() - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Get the list of index task futures submitted to the executor service.

getHttpClient() - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getHttpClientFactory() - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeDocumentService

getHttpService() - Method in class org.dataone.cn.indexer.SolrIndexService

getIdentifier() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

getIdentifier() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

getIdentifier() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

getIdentifier() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceMap

getIdentifier() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getIdentifier() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

getIdentifier() - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getIdFilterMatch() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the terms used to identify a 'id' filter

getInstance() - Static method in class org.dataone.cn.indexer.annotation.OntologyModelService

getInstance() - Static method in class org.dataone.cn.indexer.annotation.TripleStoreService

getIsPartOfFilterMatch() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the terms used to identify an 'isPartOf' filter

getLeafs() - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get the 'leaf' elements defined for a filter

getLeafs() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the leaf (child element) of a filter

getLeafs() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the 'leaf' elements defined for a filter

getLeafs() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getLeafValue(Node) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

getLength() - Method in class org.dataone.cn.indexer.convert.GeohashConverter

getMappedReferences() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

getMappedReferences() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceMap

getMappedReferences() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

getMatchDocuments() - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

getMatchDocuments() - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

getMatchDocuments() - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

getMatchDocuments() - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

getMatchDocuments() - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Get the list of format ids which the subprocessor can process

getMatchDocuments() - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

getMatchElement() - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get the string used to match this filter to an application context description

getMatchElement() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the string used to match this filter to an application context description

getMatchField() - Method in class org.dataone.cn.indexer.parser.AbstractPostProcessor

getMatchingPatterns() - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationType

getMatchValue() - Method in class org.dataone.cn.indexer.convert.BooleanMatchConverter

getMatchValue() - Method in class org.dataone.cn.indexer.parser.AbstractPostProcessor

getMemberNodeServiceRegistrationTypeDocument() - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeDocumentService

getName() - Method in class org.dataone.cn.indexer.annotation.SparqlField

getName() - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationType

getName() - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

getName() - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

getName() - Method in interface org.dataone.cn.indexer.parser.ISolrDataField

Returns the search field name.

getName() - Method in interface org.dataone.cn.indexer.parser.ISolrField

Returns the search field name.

getName() - Method in class org.dataone.cn.indexer.parser.SolrField

getName() - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

getName() - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Set the name of this processor

getName() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the name of this filter

getName() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the name of this processor

getName() - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

getName() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getName() - Method in class org.dataone.cn.indexer.solrhttp.SolrElementField

getNamespace() - Method in class org.dataone.cn.indexer.XMLNamespace

getNameSpaceContext() - Static method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

getNamespaceURI(String) - Method in class org.dataone.cn.indexer.XMLNamespaceConfig

getOptions() - Method in class org.dataone.cn.index.App

getParentMap() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

getParentMap() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

getParentMap() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getPerfLog() - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

getPid(Identifier) - Static method in class org.dataone.cn.indexer.parser.utility.SeriesIdResolver

Method to find HEAD PID for a given SID.

getPointXPath() - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

getPrefix() - Method in class org.dataone.cn.indexer.XMLNamespace

getPrefix(String) - Method in class org.dataone.cn.indexer.XMLNamespaceConfig

getPrefixes(String) - Method in class org.dataone.cn.indexer.XMLNamespaceConfig

getProcessorUtility() - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

getQuery() - Method in class org.dataone.cn.indexer.annotation.SparqlField

getQuoteMultipleWords() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the setting that determines if multiple word values are quoted

getReferencedIds() - Method in class org.dataone.cn.index.task.ResourceMapIndexTask

getRelationFields() - Method in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

getRelationSourceField() - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

getRelationSourceFormatId() - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

getResourceMaps() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

getResourceMaps() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

getResourceMaps() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

getRoot() - Method in class org.dataone.cn.indexer.parser.CommonRootSolrField

getRoot() - Method in class org.dataone.cn.indexer.parser.FilterCommonRootSolrField

Get the root element that will be processed

getRootValues(Object) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the document processor values for the document or node

getRootValues(Object, boolean) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getScheme(String) - Method in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

Returns the scheme value from the given text.

getSeparator() - Method in class org.dataone.cn.indexer.annotation.SparqlField

getSeriesId() - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

getServiceTypeDocUrl() - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeDocumentService

getServiceTypes() - Method in class org.dataone.cn.indexer.parser.utility.MemberNodeServiceRegistrationTypeCache

getSolrFields() - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

getSolrIndexUri() - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

getSolrindexUri() - Method in class org.dataone.cn.indexer.SolrIndexService

getSolrQueryUri() - Method in class org.dataone.cn.indexer.SolrIndexService

getSplitOnString() - Method in class org.dataone.cn.indexer.parser.SolrField

getSubprocessors() - Method in class org.dataone.cn.indexer.SolrIndexService

getSubRoots() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the children filter nodes

getSubRoots() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getSystemMetadataProcessor() - Method in class org.dataone.cn.indexer.SolrIndexService

getTemplate() - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

getTemplate() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the template used by this filter

getTemplate() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getValue() - Method in class org.dataone.cn.indexer.solrhttp.SolrElementField

getValueSeparator() - Method in class org.dataone.cn.indexer.parser.SolrField

getXpath() - Method in class org.dataone.cn.indexer.parser.SolrField

getxPath() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the XPath used by this filter

getxPath() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the XPath of the filter node this processor operates on

getxPath() - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

getxPath() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

getxPathExpression() - Method in class org.dataone.cn.indexer.parser.SolrField

getxPathExpression() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Get the XPath expression used to process this filter

getxPathExpression() - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Return the xPath expression applied to the filter node that this processor operates on

getxPathExpression() - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

getxPathExpression() - Method in class org.dataone.cn.indexer.parser.utility.RootElement

H

hasField(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

hasFieldWithValue(String, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

HTTPService - Class in org.dataone.cn.indexer.solrhttp

User: Porter Date: 7/26/11 Time: 11:37 AM

HTTP Services based on Apache httpcomponents.

HTTPService(HttpComponentsClientHttpRequestFactory) - Constructor for class org.dataone.cn.indexer.solrhttp.HTTPService

I

IConverter - Interface in org.dataone.cn.indexer.convert

Interface is used to convert values obtained through XPath to values consumable by indexing server.

IDocumentDeleteSubprocessor - Interface in org.dataone.cn.indexer.parser

IDocumentProvider - Interface in org.dataone.cn.indexer.parser

IDocumentProvider use to retrieve resourcemap data from different repositories.

IDocumentSubprocessor - Interface in org.dataone.cn.indexer.parser

Subprocessors test xml expression with return type of boolean.

INDEX_EAST_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

INDEX_NORTH_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

INDEX_SOUTH_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

INDEX_WEST_PROPERTY - Static variable in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

IndexingTask - Class in org.dataone.cn.index

Candidate for removal - unused - replaced by IndexTask.

IndexingTask() - Constructor for class org.dataone.cn.index.IndexingTask

IndexingTask() - Method in class org.dataone.cn.index.IndexingTask

IndexingTask(String, String, String, String, long) - Method in class org.dataone.cn.index.IndexingTask

IndexingTaskList - Class in org.dataone.cn.index

Candidate for removal - unused.

IndexingTaskList(String) - Constructor for class org.dataone.cn.index.IndexingTaskList

Load indexing tasks from the temporary hack textfile

IndexingTaskList(String, String) - Constructor for class org.dataone.cn.index.IndexingTaskList

IndexTaskDeleteProcessor - Class in org.dataone.cn.index.processor

IndexTaskDeleteProcessor() - Constructor for class org.dataone.cn.index.processor.IndexTaskDeleteProcessor

IndexTaskProcessingStrategy - Interface in org.dataone.cn.index.processor

Interface for defining IndexTask processing strategies.

IndexTaskProcessor - Class in org.dataone.cn.index.processor

IndexTaskProcessor is the controller class for processing IndexTasks.

IndexTaskProcessor() - Constructor for class org.dataone.cn.index.processor.IndexTaskProcessor

IndexTaskProcessorDaemon - Class in org.dataone.cn.index.processor

IndexTaskProcessorDaemon() - Constructor for class org.dataone.cn.index.processor.IndexTaskProcessorDaemon

IndexTaskProcessorJob - Class in org.dataone.cn.index.processor

The scope of each job is processing a list of IndexTasks.

IndexTaskProcessorJob() - Constructor for class org.dataone.cn.index.processor.IndexTaskProcessorJob

IndexTaskProcessorScheduler - Class in org.dataone.cn.index.processor

IndexTaskProcessorScheduler() - Constructor for class org.dataone.cn.index.processor.IndexTaskProcessorScheduler

IndexTaskUpdateProcessor - Class in org.dataone.cn.index.processor

IndexTaskUpdateProcessor() - Constructor for class org.dataone.cn.index.processor.IndexTaskUpdateProcessor

IndexVisibilityDelegate - Interface in org.dataone.cn.indexer.resourcemap

Interface definition regarding what documents are placed in the index (visible).

IndexVisibilityDelegateHazelcastImpl - Class in org.dataone.cn.index.processor

IndexVisibilityDelegateHazelcastImpl() - Constructor for class org.dataone.cn.index.processor.IndexVisibilityDelegateHazelcastImpl

init(DaemonContext) - Method in class org.dataone.cn.index.processor.IndexTaskProcessorDaemon

initExpression(XPath) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.CommonRootSolrField

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.FilterCommonRootSolrField

Inialize the XPath expression that will be used to location XML nodes to process

initExpression(XPath) - Method in interface org.dataone.cn.indexer.parser.ISolrField

Method for initializing xpath expression from main document builder.

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.ResolveSolrField

initExpression(XPath) - Method in class org.dataone.cn.indexer.parser.SolrField

Initializes the xPath expression parser object using xpath instance variable.

initXPathExpression(XPath) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

initXPathExpressions() - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Initialize an XPath expression used to find the nodes in a filter.

initXPathExpressions(XPath) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Initialize the XPath object for XML node which includes all filters for this collection document.

initXPathExpressions(XPath) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

insertIntoIndex(String, InputStream, String) - Method in class org.dataone.cn.indexer.SolrIndexService

Given a PID, system metadata input stream, and an optional document path, populate the set of SOLR fields for the document and update the index.

insertIntoIndex(List<IndexTask>) - Method in class org.dataone.cn.indexer.SolrIndexService

interrupt() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorJob

Interrupt calls the held processor's executor service.

interruptCurrent() - Static method in class org.dataone.cn.index.processor.IndexTaskProcessorJob

Interrupt calls the held processor's executor service.

IPostProcessor - Interface in org.dataone.cn.indexer.parser

User: porter Date: 10/26/11

isAssumeDate() - Method in class org.dataone.cn.indexer.convert.SolrDateConverter

isChunked() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

isCombineNodes() - Method in class org.dataone.cn.indexer.parser.SolrField

isDocumentVisible(Identifier) - Method in class org.dataone.cn.index.processor.IndexVisibilityDelegateHazelcastImpl

isDocumentVisible(Identifier) - Method in interface org.dataone.cn.indexer.resourcemap.IndexVisibilityDelegate

isHttps(List) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Determine if the expanded jsonld object uses the schema of https://schema.org

isMerged() - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

isMultivalue() - Method in class org.dataone.cn.indexer.annotation.SparqlField

Can this field contain multiple values.

isMultivalue() - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

Can this field contain multiple values.

isMultivalue() - Method in class org.dataone.cn.indexer.parser.SolrField

ISolrDataField - Interface in org.dataone.cn.indexer.parser

Solr field processing interface.

ISolrDatasetField - Interface in org.dataone.cn.indexer.parser

ISolrField - Interface in org.dataone.cn.indexer.parser

Solr field processing interface.

isRepeatable() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

isSeriesId(Identifier) - Static method in class org.dataone.cn.indexer.parser.utility.SeriesIdResolver

Check if the given identifier is a PID or a SID

isStreaming() - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

isSubstringAfter() - Method in class org.dataone.cn.indexer.parser.SolrField

isSubstringBefore() - Method in class org.dataone.cn.indexer.parser.SolrField

J

JsonLdSubprocessor - Class in org.dataone.cn.indexer.parser

This sub-processor handles the index of the json-ld documents.

JsonLdSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.JsonLdSubprocessor

L

LeafElement - Class in org.dataone.cn.indexer.parser.utility

A LeafElement object represents the ends of the common root element expressions.

LeafElement() - Constructor for class org.dataone.cn.indexer.parser.utility.LeafElement

loadAltEntries() - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

loadConfig() - Method in class org.dataone.cn.index.App

Load options from properties file

loadDocument(String) - Static method in class org.dataone.cn.indexer.XmlDocumentUtility

loadFromElement(Element, List<String>) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

loadTasks(String) - Method in class org.dataone.cn.index.App

Load a list of tasks from the task file.

loadTasks(String) - Method in class org.dataone.cn.index.IndexingTaskList

LOCKFILE - Static variable in class org.dataone.cn.index.App

log - Static variable in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

log - Static variable in class org.dataone.cn.indexer.parser.utility.SeriesIdResolver

LogicalOrPostProcessor - Class in org.dataone.cn.indexer.parser.utility

LogicalOrPostProcessor() - Constructor for class org.dataone.cn.indexer.parser.utility.LogicalOrPostProcessor

M

main(String[]) - Static method in class org.dataone.cn.index.App

match(SolrDoc) - Method in class org.dataone.cn.indexer.parser.AbstractPostProcessor

matchField - Variable in class org.dataone.cn.indexer.parser.AbstractPostProcessor

matchValue - Variable in class org.dataone.cn.indexer.parser.AbstractPostProcessor

MemberNodeServiceRegistrationType - Class in org.dataone.cn.indexer.convert

MemberNodeServiceRegistrationType() - Constructor for class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationType

MemberNodeServiceRegistrationTypeCache - Class in org.dataone.cn.indexer.parser.utility

MemberNodeServiceRegistrationTypeCache() - Constructor for class org.dataone.cn.indexer.parser.utility.MemberNodeServiceRegistrationTypeCache

MemberNodeServiceRegistrationTypeConverter - Class in org.dataone.cn.indexer.convert

MemberNodeServiceRegistrationTypeConverter() - Constructor for class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeConverter

MemberNodeServiceRegistrationTypeDocumentService - Class in org.dataone.cn.indexer.convert

MemberNodeServiceRegistrationTypeDocumentService() - Constructor for class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationTypeDocumentService

MemberNodeServiceRegistrationTypesParser - Class in org.dataone.cn.indexer.parser.utility

Helper class for parsing a Document of service types into service names and the corresponding regex expressions that are used to match fields in a service type doc to the proper service name.

MemberNodeServiceRegistrationTypesParser() - Constructor for class org.dataone.cn.indexer.parser.utility.MemberNodeServiceRegistrationTypesParser

mergeIndexedDocuments(List<SolrDoc>) - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

mergeIndexedDocuments(List<SolrDoc>) - Method in interface org.dataone.cn.indexer.resourcemap.ResourceMap

mergeIndexedDocuments(List<SolrDoc>) - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

MergeSolrField - Class in org.dataone.cn.indexer.parser

Extension of SolrField.

MergeSolrField(String, String) - Constructor for class org.dataone.cn.indexer.parser.MergeSolrField

MergeSolrField(String, String, String) - Constructor for class org.dataone.cn.indexer.parser.MergeSolrField

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

Merge updates with existing solr documents

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

Merge updates with existing solr documents

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in interface org.dataone.cn.indexer.parser.IDocumentSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

mergeWithIndexedDocument(SolrDoc) - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

Merge updates with existing solr documents

mergeWithIndexedDocument(SolrDoc, List<String>) - Method in class org.dataone.cn.indexer.parser.SubprocessorUtility

multivalue - Variable in class org.dataone.cn.indexer.annotation.SparqlField

multivalue - Variable in class org.dataone.cn.indexer.parser.DerivedSolrField

multivalue - Variable in class org.dataone.cn.indexer.parser.SolrField

N

name - Variable in class org.dataone.cn.indexer.parser.DerivedSolrField

name - Variable in class org.dataone.cn.indexer.parser.SolrField

NS_CITO - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

NS_DCTERMS - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

NS_RDF - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

O

objectPath - Variable in class org.dataone.cn.index.IndexingTask

OntologyModelService - Class in org.dataone.cn.indexer.annotation

org.dataone.cn.index - package org.dataone.cn.index

org.dataone.cn.index.processor - package org.dataone.cn.index.processor

org.dataone.cn.index.task - package org.dataone.cn.index.task

org.dataone.cn.indexer - package org.dataone.cn.indexer

org.dataone.cn.indexer.annotation - package org.dataone.cn.indexer.annotation

org.dataone.cn.indexer.convert - package org.dataone.cn.indexer.convert

org.dataone.cn.indexer.parser - package org.dataone.cn.indexer.parser

org.dataone.cn.indexer.parser.utility - package org.dataone.cn.indexer.parser.utility

org.dataone.cn.indexer.resourcemap - package org.dataone.cn.indexer.resourcemap

org.dataone.cn.indexer.solrhttp - package org.dataone.cn.indexer.solrhttp

OUTPUT_DATE_FORMAT - Static variable in class org.dataone.cn.indexer.convert.SolrDateConverter

OutputStreamHttpEntity - Class in org.dataone.cn.indexer.solrhttp

Serializes SolrElementAdd command and child documents to HTTP stream

OutputStreamHttpEntity(SolrElementAdd, String) - Constructor for class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

P

parseAnnotation(InputStream) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

Parse the annotation for fields

parseDataCiteBoundingCoordinates(Document, XPathExpression, XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

parseDataCiteGeohash(Document, XPathExpression, XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

parserList - Variable in class org.dataone.cn.index.App

parseServiceTypes(Document) - Static method in class org.dataone.cn.indexer.parser.utility.MemberNodeServiceRegistrationTypesParser

Extracts a Collection of MemberNodeServiceRegistrationTypes (each containing the name and match patterns for a type of service) from a given service types Document.

ParseSolrDate(String) - Static method in class org.dataone.cn.indexer.convert.SolrDateConverter

pid - Variable in class org.dataone.cn.index.IndexingTask

pointXPath - Variable in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

pointXPathExpression - Variable in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

process(IndexTask) - Method in class org.dataone.cn.index.processor.IndexTaskDeleteProcessor

process(List<IndexTask>) - Method in class org.dataone.cn.index.processor.IndexTaskDeleteProcessor

process(IndexTask) - Method in interface org.dataone.cn.index.processor.IndexTaskProcessingStrategy

process(List<IndexTask>) - Method in interface org.dataone.cn.index.processor.IndexTaskProcessingStrategy

process(IndexTask) - Method in class org.dataone.cn.index.processor.IndexTaskUpdateProcessor

process(List<IndexTask>) - Method in class org.dataone.cn.index.processor.IndexTaskUpdateProcessor

process(String, Map<String, SolrDoc>) - Method in class org.dataone.cn.indexer.parser.DecadePostProcessor

process(String, Map<String, SolrDoc>) - Method in interface org.dataone.cn.indexer.parser.IPostProcessor

process(String) - Method in class org.dataone.cn.indexer.parser.utility.LogicalOrPostProcessor

process(String, Map<String, String>) - Method in class org.dataone.cn.indexer.parser.utility.TemplateStringProcessor

processDocForDelete(String, Map<String, SolrDoc>) - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

processDocForDelete(String, Map<String, SolrDoc>) - Method in interface org.dataone.cn.indexer.parser.IDocumentDeleteSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

Default functionality is to process fields like XPathDocumentProcessor and add fields to Solr Document This method maybe overridden to add functionality such as retrieving and updating existing documents in the index.

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in interface org.dataone.cn.indexer.parser.IDocumentSubprocessor

Method allows for manipulation of indexed fields that should be added to solr index

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

Implements IDocumentSubprocessor.processDocument method.

processDocument(String, Map<String, SolrDoc>, InputStream) - Method in class org.dataone.cn.indexer.parser.ScienceMetadataDocumentSubprocessor

processFailedIndexTaskQueue() - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Index the index task which currently has the failed status on the index task repository

processField(Document) - Method in class org.dataone.cn.indexer.parser.MergeSolrField

processField(Document) - Method in class org.dataone.cn.indexer.parser.SolrField

Process incoming xml doc object for the data value this SolrField instance is configured to derive.

processIndexTaskQueue() - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Start a round of IndexTask processing.

processIndexTaskQueue(List<IndexTask>) - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Index the given index queue

processNodeValue(String, Set<String>) - Method in class org.dataone.cn.indexer.parser.SolrField

processObject(String, InputStream, String) - Method in class org.dataone.cn.indexer.SolrIndexService

Given a PID, system metadata input stream, and an optional document path, populate the set of SOLR fields for the document.

R

RdfXmlSubprocessor - Class in org.dataone.cn.indexer.annotation

A solr index parser for an RDF/XML file.

RdfXmlSubprocessor() - Constructor for class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

RemoteAnnotatorSubprocessor - Class in org.dataone.cn.indexer.annotation

The intent of this subprocessor is to fetch annotations about the given documents as housed in an external store and add them to the solr index.

RemoteAnnotatorSubprocessor() - Constructor for class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

removeAllFields(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

removeField(SolrElementField) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

removeFieldsWithValue(String, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

removeFromIndex(String) - Method in class org.dataone.cn.indexer.SolrIndexService

removeFromIndex(List<IndexTask>) - Method in class org.dataone.cn.indexer.SolrIndexService

removeOneFieldWithValue(String, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

representsResourceMap(String) - Static method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceMap

representsResourceMap(String) - Static method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

ResolveSolrField - Class in org.dataone.cn.indexer.parser

Simple SolrField which configures the resolve url for the document being processed.

ResolveSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.ResolveSolrField

ResourceEntry - Interface in org.dataone.cn.indexer.resourcemap

ResourceMap - Interface in org.dataone.cn.indexer.resourcemap

Defines interface used by resource map index processing Methods derive information from underlying ORE document

ResourceMapDataSource - Class in org.dataone.cn.indexer.resourcemap

This class needs updated.

ResourceMapDataSource() - Constructor for class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

ResourceMapFactory - Class in org.dataone.cn.indexer.resourcemap

Provides concrete instances of ResourceMap interface.

ResourceMapIndexTask - Class in org.dataone.cn.index.task

This class represents an index task for a resource map object.

ResourceMapIndexTask() - Constructor for class org.dataone.cn.index.task.ResourceMapIndexTask

Default constructor

ResourceMapSubprocessor - Class in org.dataone.cn.indexer.parser

Resource Map Document processor.

ResourceMapSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

retrieveDocumentFromSolrServer(String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

RootElement - Class in org.dataone.cn.indexer.parser.utility

Used by CommonRootSolrField.

RootElement() - Constructor for class org.dataone.cn.indexer.parser.utility.RootElement

run() - Method in class org.dataone.cn.index.App

Here the indexing tasks are run sequentially, which is not really necessary for indexing data and science metadata entries.

S

SCHEME_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

ScienceMetadataDocumentSubprocessor - Class in org.dataone.cn.indexer.parser

Created by IntelliJ IDEA.

ScienceMetadataDocumentSubprocessor() - Constructor for class org.dataone.cn.indexer.parser.ScienceMetadataDocumentSubprocessor

sendSolrDelete(String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

sendSolrDeletes(List<String>) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

sendUpdate(String, SolrElementAdd, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

Posts document data to Solr indexer.

sendUpdate(String, SolrElementAdd) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

sendUpdate(String, SolrElementAdd, String, String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

separator - Variable in class org.dataone.cn.indexer.annotation.SparqlField

serialize(OutputStream, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

serialize(OutputStream, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrElementAdd

Writes data to (http) output stream with the specified encoding

serialize(OutputStream, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrElementField

SeriesIdResolver - Class in org.dataone.cn.indexer.parser.utility

SeriesIdResolver() - Constructor for class org.dataone.cn.indexer.parser.utility.SeriesIdResolver

setAltEntryList(Map<String, String>) - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

setAssumeDate(boolean) - Method in class org.dataone.cn.indexer.convert.SolrDateConverter

setBase(ElementCombiner) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

setBase(ElementCombiner) - Method in interface org.dataone.cn.indexer.parser.ISolrDatasetField

setBaseURI(String) - Method in class org.dataone.cn.indexer.resourcemap.ResourceMapDataSource

setBiDirectionalRelationFields(List<String>) - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

setBoxXPath(String) - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

setCatalogQuery(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the 'catalogQuery' portion of a query filter

setCombineDelimiter(String) - Method in class org.dataone.cn.indexer.parser.SolrField

Set the String delimiter to be used between items in the set, when results are concatenated (see SolrField.isCombineNodes()).

setCombineNodes(boolean) - Method in class org.dataone.cn.indexer.parser.SolrField

If set results are concatenated together using single space as separator.

setConcatValues(Boolean) - Method in class org.dataone.cn.indexer.annotation.SparqlField

setContentType(Header) - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

setConverter(IConverter) - Method in class org.dataone.cn.indexer.annotation.SparqlField

Set the converter

setConverter(IConverter) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

setConverter(IConverter) - Method in class org.dataone.cn.indexer.parser.SolrField

setDateSysmModified(String) - Method in class org.dataone.cn.index.IndexingTask

setDedupe(boolean) - Method in class org.dataone.cn.indexer.parser.SolrField

Controls whether duplicate values be removed from final field value.

setDefaults(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set default filter element values

setDefaultValue(String) - Method in class org.dataone.cn.indexer.parser.SolrField

setDeleteSubprocessors(List<IDocumentDeleteSubprocessor>) - Method in class org.dataone.cn.indexer.SolrIndexService

setDelimiter(String) - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

setDelimiter(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the token delimeter used to separate values

setDelimiter(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the delimeter used to separate string tokens

setDelimiter(String) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

setDelimiter(String) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setDisallowedValues(List<String>) - Method in class org.dataone.cn.indexer.parser.SolrField

Controls whether there are values which should be disallowed - removed from field value.

setDocList(List<SolrDoc>) - Method in class org.dataone.cn.indexer.solrhttp.SolrElementAdd

setElements(LinkedHashMap<String, Object>) - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

setEscapeSpecialChars(Boolean) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the setting that determines if special characters should be escaped in this filter value

setFieldList(List<ISolrDataField>) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

setFieldList(List<ISolrField>) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

setFieldList(List<ISolrDataField>) - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

setFieldList(List<ISolrDataField>) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

setFieldList(List<ISolrDataField>) - Method in class org.dataone.cn.indexer.annotation.RemoteAnnotatorSubprocessor

setFieldList(List<ISolrField>) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

setFieldList(List<ISolrDataField>) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Set the list of the Solr field names which the subprocessor can handle

setFieldList(List<SolrElementField>) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

setFieldsToMerge(List<String>) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

setFieldsToMerge(List<String>) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

setFieldsToMerge(List<String>) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

setFieldsToMerge(List<String>) - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

setFilterGroup(FilterGroupProcessor) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get defined filter group processor

setFilters(List<FilterProcessor>) - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get all defined filter processors

setFilters(List<FilterProcessor>) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get all defined filter processors

setFmtid(String) - Method in class org.dataone.cn.index.IndexingTask

setHttpService(HTTPService) - Method in class org.dataone.cn.indexer.SolrIndexService

setIdentifier(String) - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

setIdentifier(String) - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

setIdentifier(String) - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

setIdFilterMatch(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the terms used to identify a 'id' filter

setIsPartOfFilterMatch(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the terms used to identify an 'isPartOf' filter

setLeafs(List<LeafElement>) - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get the 'leaf' elements defined for a filter

setLeafs(List<LeafElement>) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the leaf (child element) of a filter

setLeafs(List<LeafElement>) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the 'leaf' elements defined for a filter

setLeafs(List<LeafElement>) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setLength(int) - Method in class org.dataone.cn.indexer.convert.GeohashConverter

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.annotation.AnnotatorSubprocessor

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.annotation.RdfXmlSubprocessor

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.parser.JsonLdSubprocessor

Set the list of format ids which the subprocessor can process

setMatchDocuments(List<String>) - Method in class org.dataone.cn.indexer.parser.ResourceMapSubprocessor

setMatchElement(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Set the string used to match this filter to an application context description

setMatchElement(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the string used to match this filter to an application context description

setMatchField(String) - Method in class org.dataone.cn.indexer.parser.AbstractPostProcessor

setMatchingPatterns(Collection<String>) - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationType

setMatchValue(String) - Method in class org.dataone.cn.indexer.convert.BooleanMatchConverter

setMatchValue(List<String>) - Method in class org.dataone.cn.indexer.parser.AbstractPostProcessor

setMerged(boolean) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

setMultivalue(boolean) - Method in class org.dataone.cn.indexer.annotation.SparqlField

Controls whether the search index field this instance of SolrField is generating is defined as accepting multiple values (a collection of values).

setMultivalue(boolean) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

Controls whether the search index field this instance of SolrField is generating is defined as accepting multiple values (a collection of values).

setMultivalue(boolean) - Method in class org.dataone.cn.indexer.parser.SolrField

Controls whether the search index field this instance of SolrField is generating is defined as accepting multiple values (a collection of values).

setName(String) - Method in class org.dataone.cn.indexer.annotation.SparqlField

setName(String) - Method in class org.dataone.cn.indexer.convert.MemberNodeServiceRegistrationType

setName(String) - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

setName(String) - Method in class org.dataone.cn.indexer.parser.DerivedSolrField

setName(String) - Method in class org.dataone.cn.indexer.parser.SolrField

The name of the search index field this SolrField instance is generating.

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterGroupProcessor

Get the name of this processor

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the name of this filter

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Get the name of this processor

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

setName(String) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setName(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrElementField

setNamespace(String) - Method in class org.dataone.cn.indexer.XMLNamespace

setObjectBasePath(String) - Method in class org.dataone.cn.index.App

setObjectPath(String) - Method in class org.dataone.cn.index.IndexingTask

setOntologyList(List<String>) - Method in class org.dataone.cn.indexer.annotation.OntologyModelService

setPerfLog(PerformanceLogger) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

setPid(String) - Method in class org.dataone.cn.index.IndexingTask

setPointXPath(String) - Method in class org.dataone.cn.indexer.parser.DataCiteSpatialBoxBoundingCoordinatesSolrField

setPrefix(String) - Method in class org.dataone.cn.indexer.XMLNamespace

setProcessorUtility(SubprocessorUtility) - Method in class org.dataone.cn.indexer.annotation.EmlAnnotationSubprocessor

setQuery(String) - Method in class org.dataone.cn.indexer.annotation.SparqlField

setQuoteMultipleWords(Boolean) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the setting that determines if multiple word values are quoted

setReferencedIds(List<String>) - Method in class org.dataone.cn.index.task.ResourceMapIndexTask

setRelationFields(List<String>) - Method in class org.dataone.cn.indexer.parser.BaseReprocessSubprocessor

setRelationSourceField(String) - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

setRelationSourceFormatId(String) - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

setResourceMaps(Set<String>) - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

setResourceMaps(Set<String>) - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

setResourceMaps(Set<String>) - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

setRoot(RootElement) - Method in class org.dataone.cn.indexer.parser.CommonRootSolrField

setRoot(FilterRootElement) - Method in class org.dataone.cn.indexer.parser.FilterCommonRootSolrField

Set the root element that will be processed

setSeparator(String) - Method in class org.dataone.cn.indexer.annotation.SparqlField

setSolrFields(List<ISolrField>) - Method in class org.dataone.cn.indexer.parser.AggregateSolrField

setSolrIndexUri(String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

setSolrIndexUri(String) - Method in class org.dataone.cn.indexer.SolrIndexService

setSolrQueryUri(String) - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

setSolrQueryUri(String) - Method in class org.dataone.cn.indexer.SolrIndexService

setSolrSchemaPath(String) - Method in class org.dataone.cn.indexer.solrhttp.HTTPService

setSplitOnString(String) - Method in class org.dataone.cn.indexer.parser.SolrField

setSpringConfigFile(String) - Method in class org.dataone.cn.index.App

setSubprocessors(List<IDocumentSubprocessor>) - Method in class org.dataone.cn.indexer.SolrIndexService

setSubRoots(List<FilterRootElement>) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the children filter nodes

setSubRoots(List<RootElement>) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setSubstringAfter(boolean) - Method in class org.dataone.cn.indexer.parser.SolrField

setSubstringBefore(boolean) - Method in class org.dataone.cn.indexer.parser.SolrField

setSysMetaPath(String) - Method in class org.dataone.cn.index.IndexingTask

setSystemMetadataProcessor(IDocumentSubprocessor) - Method in class org.dataone.cn.indexer.SolrIndexService

setTaskListPath(String) - Method in class org.dataone.cn.index.App

setTemplate(String) - Method in class org.dataone.cn.indexer.parser.utility.ElementCombiner

setTemplate(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the template used by this filter

setTemplate(String) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setUniDirectionalRelationFields(List<String>) - Method in class org.dataone.cn.indexer.parser.BaseDocumentDeleteSubprocessor

setValue(String) - Method in class org.dataone.cn.indexer.solrhttp.SolrElementField

setValueSeparator(String) - Method in class org.dataone.cn.indexer.parser.SolrField

Delimiter character between values mined from source xml document.

setXmlNamespaceConfig(XMLNamespaceConfig) - Static method in class org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor

setXpath(String) - Method in class org.dataone.cn.indexer.parser.SolrField

A string representing an xPath selector rule used to derive search index field values from incoming xml documents.

setxPath(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the XPath used by this filter

setxPath(String) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Return the XPath for filter nodes this processor operates on

setxPath(String) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

setxPath(String) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

setxPathExpression(XPathExpression) - Method in class org.dataone.cn.indexer.parser.SolrField

setxPathExpression(XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.FilterProcessor

Set the XPath expression used to process this filter

setxPathExpression(XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.FilterRootElement

Set the xpath expression applied to the filter node that this processor operates on

setxPathExpression(XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.LeafElement

setxPathExpression(XPathExpression) - Method in class org.dataone.cn.indexer.parser.utility.RootElement

shutdownExecutor() - Method in class org.dataone.cn.index.processor.IndexTaskProcessor

Call at the end of processing, when canceled tasks would otherwise be left in the IN PROCESS state.

SolrDateConverter - Class in org.dataone.cn.indexer.convert

Converts date to solr consumable format.

SolrDateConverter() - Constructor for class org.dataone.cn.indexer.convert.SolrDateConverter

SolrDoc - Class in org.dataone.cn.indexer.solrhttp

User: Porter Date: 7/26/11 Time: 4:04 PM

SolrDoc() - Constructor for class org.dataone.cn.indexer.solrhttp.SolrDoc

SolrDoc(List<SolrElementField>) - Constructor for class org.dataone.cn.indexer.solrhttp.SolrDoc

SolrElementAdd - Class in org.dataone.cn.indexer.solrhttp

Command for adding or updating documents in Solr index example output:

SolrElementAdd() - Constructor for class org.dataone.cn.indexer.solrhttp.SolrElementAdd

SolrElementAdd(List<SolrDoc>) - Constructor for class org.dataone.cn.indexer.solrhttp.SolrElementAdd

SolrElementField - Class in org.dataone.cn.indexer.solrhttp

User: Porter Date: 7/25/11 Time: 4:14 PM Contains constants FILED_XXXX for DataOne system metdata solr index fields.

SolrElementField() - Constructor for class org.dataone.cn.indexer.solrhttp.SolrElementField

SolrElementField(String, String) - Constructor for class org.dataone.cn.indexer.solrhttp.SolrElementField

SolrField - Class in org.dataone.cn.indexer.parser

Base implementation of a class used to process an xml document in order to mine value(s) from it - to be placed in a search index field.

SolrField() - Constructor for class org.dataone.cn.indexer.parser.SolrField

SolrField(String, String, boolean) - Constructor for class org.dataone.cn.indexer.parser.SolrField

SolrField(String, String, boolean, IConverter) - Constructor for class org.dataone.cn.indexer.parser.SolrField

SolrField(String, String) - Constructor for class org.dataone.cn.indexer.parser.SolrField

SolrIndexService - Class in org.dataone.cn.indexer

Top level document processing class.

SolrIndexService() - Constructor for class org.dataone.cn.indexer.SolrIndexService

SolrLatitudeConverter - Class in org.dataone.cn.indexer.convert

Basic value check for latitude entries.

SolrLatitudeConverter() - Constructor for class org.dataone.cn.indexer.convert.SolrLatitudeConverter

SolrLongitudeConverter - Class in org.dataone.cn.indexer.convert

Basic value check for longitude, assumed to be decimal degrees.

SolrLongitudeConverter() - Constructor for class org.dataone.cn.indexer.convert.SolrLongitudeConverter

SparqlField - Class in org.dataone.cn.indexer.annotation

SparqlField(String, String) - Constructor for class org.dataone.cn.indexer.annotation.SparqlField

SpatialBoxParsingUtility - Class in org.dataone.cn.indexer.parser.utility

SpatialBoxParsingUtility() - Constructor for class org.dataone.cn.indexer.parser.utility.SpatialBoxParsingUtility

splitOnString - Variable in class org.dataone.cn.indexer.parser.SolrField

start() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorDaemon

start() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorScheduler

called by the IndexTaskProcessorDaemon's start method

START_FIELD - Static variable in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

stop() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorDaemon

stop() - Method in class org.dataone.cn.index.processor.IndexTaskProcessorScheduler

called by IndexTaskProcessorDaemon's stop method.

SubprocessorUtility - Class in org.dataone.cn.indexer.parser

SubprocessorUtility() - Constructor for class org.dataone.cn.indexer.parser.SubprocessorUtility

substringAfter - Variable in class org.dataone.cn.indexer.parser.SolrField

substringBefore - Variable in class org.dataone.cn.indexer.parser.SolrField

sysMetaPath - Variable in class org.dataone.cn.index.IndexingTask

T

TAG_DOCUMENTS - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

TAG_IDENTIFIER - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

TAG_IS_DOCUMENTED_BY - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

TemplateStringProcessor - Class in org.dataone.cn.indexer.parser.utility

Used by RootElement to define how leaf element data values are to be combined into the final field value.

TemplateStringProcessor() - Constructor for class org.dataone.cn.indexer.parser.utility.TemplateStringProcessor

TemporalPeriodParsingUtility - Class in org.dataone.cn.indexer.parser.utility

Utility class for extracting values from a dcterms:temporal with xsi:type="dcterms:Period" and for formatting the date values contained within to a solr consumable format.

TemporalPeriodParsingUtility() - Constructor for class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

TemporalPeriodSolrField - Class in org.dataone.cn.indexer.parser

Used to convert the text inside of a dcterms:temporal with xsi:type="dcterms:Period" into SolrElementFields for beginDate and endDate Example input:

TemporalPeriodSolrField() - Constructor for class org.dataone.cn.indexer.parser.TemporalPeriodSolrField

TemporalPeriodSolrField(String) - Constructor for class org.dataone.cn.indexer.parser.TemporalPeriodSolrField

textToDate(String) - Method in class org.dataone.cn.indexer.convert.FgdcDateConverter

toString() - Method in class org.dataone.cn.indexer.resourcemap.ForesiteResourceEntry

toString() - Method in interface org.dataone.cn.indexer.resourcemap.ResourceEntry

toString() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

toString() - Method in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

TripleStoreService - Class in org.dataone.cn.indexer.annotation

tstamp - Variable in class org.dataone.cn.index.IndexingTask

TSTAMPFILE - Static variable in class org.dataone.cn.index.App

U

updateOrAddField(String, String) - Method in class org.dataone.cn.indexer.solrhttp.SolrDoc

V

valueSeparator - Variable in class org.dataone.cn.indexer.parser.SolrField

visibleInIndex(SystemMetadata) - Static method in class org.dataone.cn.indexer.solrhttp.SolrDoc

W

W3C_DTF_SCHEME - Static variable in class org.dataone.cn.indexer.parser.utility.TemporalPeriodParsingUtility

writeTo(OutputStream) - Method in class org.dataone.cn.indexer.solrhttp.OutputStreamHttpEntity

X

XmlDocumentUtility - Class in org.dataone.cn.indexer

XmlDocumentUtility() - Constructor for class org.dataone.cn.indexer.XmlDocumentUtility

XMLNamespace - Class in org.dataone.cn.indexer

Helper class for prefix to namespace mappings used in xpath

XMLNamespace() - Constructor for class org.dataone.cn.indexer.XMLNamespace

XMLNamespace(String, String) - Constructor for class org.dataone.cn.indexer.XMLNamespace

XMLNamespaceConfig - Class in org.dataone.cn.indexer

User: Porter Date: 7/25/11 Time: 4:32 PM

XMLNamespaceConfig(List<XMLNamespace>) - Constructor for class org.dataone.cn.indexer.XMLNamespaceConfig

xpath - Variable in class org.dataone.cn.indexer.parser.SolrField

XPATH_RESOURCE_MAP_IDENTIFIER - Static variable in class org.dataone.cn.indexer.resourcemap.XPathResourceMap

xPathExpression - Variable in class org.dataone.cn.indexer.parser.SolrField

XPathResourceEntry - Class in org.dataone.cn.indexer.resourcemap

ResourceEntry is an document entry in the Resource Map.

XPathResourceEntry(Element, ResourceMap, IndexVisibilityDelegate) - Constructor for class org.dataone.cn.indexer.resourcemap.XPathResourceEntry

XPathResourceMap - Class in org.dataone.cn.indexer.resourcemap

ResourceMap parses resource map and generate index information

XPathResourceMap(Document) - Constructor for class org.dataone.cn.indexer.resourcemap.XPathResourceMap

XPathResourceMap(Document, IndexVisibilityDelegate) - Constructor for class org.dataone.cn.indexer.resourcemap.XPathResourceMap

XPathResourceMap(String) - Constructor for class org.dataone.cn.indexer.resourcemap.XPathResourceMap

XPathResourceMap(String, IndexVisibilityDelegate) - Constructor for class org.dataone.cn.indexer.resourcemap.XPathResourceMap

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