€cdocutils.nodes document q)q}q(U nametypesq}q(Xcyberinfrastructure visionqˆXnbii metadata clearing houseqˆX ornl daacqˆXdataone overviewq NXdataoneq ˆX"knowledge network for biodiversityq ˆX;partnership for interdisciplinary studies of coastal oceansq ˆXdryadq ˆXdatanet programqˆuUsubstitution_defsq}qUparse_messagesq]qUcurrent_sourceqNU decorationqNUautofootnote_startqKUnameidsq}q(hUcyberinfrastructure-visionqhUnbii-metadata-clearing-houseqhU ornl-daacqh Udataone-overviewqh Udataoneqh U"knowledge-network-for-biodiversityqh U;partnership-for-interdisciplinary-studies-of-coastal-oceansqh UdryadqhUdatanet-programq uUchildrenq!]q"cdocutils.nodes section q#)q$}q%(U rawsourceq&UUparentq'hUsourceq(X]/var/lib/jenkins/jobs/API_Documentation_trunk/workspace/api-documentation/source/overview.txtq)Utagnameq*Usectionq+U attributesq,}q-(Udupnamesq.]Uclassesq/]Ubackrefsq0]Uidsq1]q2haUnamesq3]q4h auUlineq5KUdocumentq6hh!]q7(cdocutils.nodes title q8)q9}q:(h&XDataONE Overviewq;h'h$h(h)h*Utitleqcdocutils.nodes Text q?XDataONE Overviewq@…qA}qB(h&h;h'h9ubaubcdocutils.nodes paragraph qC)qD}qE(h&XœThe major goal of NSFs `DataNet program`_ is to catalyze development of a system addressing the vision outlined in Chapter 3 (Data, Data Analysis, and Visualization) of NSF’s `Cyberinfrastructure Vision`_ for 21st Century Discovery in which “science and engineering digital data are routinely deposited in well-documented form, are regularly and easily consulted and analyzed by specialists and non-specialists alike, are openly accessible while suitably protected, and are reliably preserved.†The DataNet project DataONE_ (Data Observation Network for Earth) is a federated data network built to improve access to Earth science data, and to support science by:h'h$h(h)h*U paragraphqFh,}qG(h.]h/]h0]h1]h3]uh5Kh6hh!]qH(h?XThe major goal of NSFs qI…qJ}qK(h&XThe major goal of NSFs h'hDubcdocutils.nodes reference qL)qM}qN(h&X`DataNet program`_UresolvedqOKh'hDh*U referenceqPh,}qQ(UnameXDataNet programUrefuriqRX2http://www.nsf.gov/pubs/2007/nsf07601/nsf07601.htmqSh1]h0]h.]h/]h3]uh!]qTh?XDataNet programqU…qV}qW(h&Uh'hMubaubh?Xˆ is to catalyze development of a system addressing the vision outlined in Chapter 3 (Data, Data Analysis, and Visualization) of NSF’s qX…qY}qZ(h&Xˆ is to catalyze development of a system addressing the vision outlined in Chapter 3 (Data, Data Analysis, and Visualization) of NSF’s h'hDubhL)q[}q\(h&X`Cyberinfrastructure Vision`_hOKh'hDh*hPh,}q](UnameXCyberinfrastructure VisionhRX.http://www.nsf.gov/pubs/2007/nsf0728/index.jspq^h1]h0]h.]h/]h3]uh!]q_h?XCyberinfrastructure Visionq`…qa}qb(h&Uh'h[ubaubh?X; for 21st Century Discovery in which “science and engineering digital data are routinely deposited in well-documented form, are regularly and easily consulted and analyzed by specialists and non-specialists alike, are openly accessible while suitably protected, and are reliably preserved.†The DataNet project qc…qd}qe(h&X; for 21st Century Discovery in which “science and engineering digital data are routinely deposited in well-documented form, are regularly and easily consulted and analyzed by specialists and non-specialists alike, are openly accessible while suitably protected, and are reliably preserved.†The DataNet project h'hDubhL)qf}qg(h&XDataONE_hOKh'hDh*hPh,}qh(UnameXDataONEhRXhttp://dataone.org/qih1]h0]h.]h/]h3]uh!]qjh?XDataONEqk…ql}qm(h&Uh'hfubaubh?X‹ (Data Observation Network for Earth) is a federated data network built to improve access to Earth science data, and to support science by:qn…qo}qp(h&X‹ (Data Observation Network for Earth) is a federated data network built to improve access to Earth science data, and to support science by:h'hDubeubcdocutils.nodes block_quote qq)qr}qs(h&Uh'h$h(Nh*U block_quoteqth,}qu(h.]h/]h0]h1]h3]uh5Nh6hh!]qvcdocutils.nodes enumerated_list qw)qx}qy(h&Uh,}qz(Usuffixq{U.h1]h0]h.]Uprefixq|Uh/]h3]Uenumtypeq}Uarabicq~uh'hrh!]q(cdocutils.nodes list_item q€)q}q‚(h&X=engaging the relevant science, data, and policy communities; h,}qƒ(h.]h/]h0]h1]h3]uh'hxh!]q„hC)q…}q†(h&X<engaging the relevant science, data, and policy communities;q‡h'hh(h)h*hFh,}qˆ(h.]h/]h0]h1]h3]uh5Kh!]q‰h?X<engaging the relevant science, data, and policy communities;qŠ…q‹}qŒ(h&h‡h'h…ubaubah*U list_itemqubh€)qŽ}q(h&X;facilitating easy, secure, and persistent storage of data; h,}q(h.]h/]h0]h1]h3]uh'hxh!]q‘hC)q’}q“(h&X:facilitating easy, secure, and persistent storage of data;q”h'hŽh(h)h*hFh,}q•(h.]h/]h0]h1]h3]uh5Kh!]q–h?X:facilitating easy, secure, and persistent storage of data;q—…q˜}q™(h&h”h'h’ubaubah*hubh€)qš}q›(h&Xsdisseminating integrated and user-friendly tools for data discovery, analysis, visualization, and decision-making. h,}qœ(h.]h/]h0]h1]h3]uh'hxh!]qhC)qž}qŸ(h&Xrdisseminating integrated and user-friendly tools for data discovery, analysis, visualization, and decision-making.q h'hšh(h)h*hFh,}q¡(h.]h/]h0]h1]h3]uh5Kh!]q¢h?Xrdisseminating integrated and user-friendly tools for data discovery, analysis, visualization, and decision-making.q£…q¤}q¥(h&h h'hžubaubah*hubeh*Uenumerated_listq¦ubaubcdocutils.nodes image q§)q¨}q©(h&X,.. image:: images/ReferenceArchitecture.png h'h$h(h)h*Uimageqªh,}q«(UuriX images/ReferenceArchitecture.pngq¬h1]h0]h.]h/]U candidatesq­}q®U*h¬sh3]uh5Kh6hh!]ubhC)q¯}q°(h&XL*Figure 1.* An overview of the major components of the DataONE architecture.q±h'h$h(h)h*hFh,}q²(h.]h/]h0]h1]h3]uh5Kh6hh!]q³(cdocutils.nodes emphasis q´)qµ}q¶(h&X *Figure 1.*h,}q·(h.]h/]h0]h1]h3]uh'h¯h!]q¸h?X Figure 1.q¹…qº}q»(h&Uh'hµubah*Uemphasisq¼ubh?XA An overview of the major components of the DataONE architecture.q½…q¾}q¿(h&XA An overview of the major components of the DataONE architecture.h'h¯ubeubcdocutils.nodes comment qÀ)qÁ}qÂ(h&X.. image:: images/core_components.png @startuml images/core_components.png [lib_common] package ITK { [lib_client] } [Member Node] [Coordinating Node] [lib_client] .. [lib_common] [Member Node] .. [lib_common] [Coordinating Node] .. [lib_common] @endumlh'h$h(h)h*UcommentqÃh,}qÄ(U xml:spaceqÅUpreserveqÆh1]h0]h.]h/]h3]uh5K-h6hh!]qÇh?X.. image:: images/core_components.png @startuml images/core_components.png [lib_common] package ITK { [lib_client] } [Member Node] [Coordinating Node] [lib_client] .. [lib_common] [Member Node] .. [lib_common] [Coordinating Node] .. [lib_common] @endumlqÈ…qÉ}qÊ(h&Uh'hÁubaubhC)qË}qÌ(h&X'There are three major components in the DataONE infrastructure: Member Nodes which represent data repositories, Coordinating Nodes which serve data management and discovery services, and the Investigator Toolkit which contains a variety of end user tools for interacting with the infrastructure.qÍh'h$h(h)h*hFh,}qÎ(h.]h/]h0]h1]h3]uh5K.h6hh!]qÏh?X'There are three major components in the DataONE infrastructure: Member Nodes which represent data repositories, Coordinating Nodes which serve data management and discovery services, and the Investigator Toolkit which contains a variety of end user tools for interacting with the infrastructure.qÐ…qÑ}qÒ(h&hÍh'hËubaubhC)qÓ}qÔ(h&XOParticipation in the DataONE infrastructure as a Member Node or by using the Investigator Toolkit (i.e. implementing or utilizing DataONE service interfaces) provides several fundamental services upon which additional infrastructure, services, applications and communities may be built. These core, community building services include:qÕh'h$h(h)h*hFh,}qÖ(h.]h/]h0]h1]h3]uh5K3h6hh!]q×h?XOParticipation in the DataONE infrastructure as a Member Node or by using the Investigator Toolkit (i.e. implementing or utilizing DataONE service interfaces) provides several fundamental services upon which additional infrastructure, services, applications and communities may be built. These core, community building services include:qØ…qÙ}qÚ(h&hÕh'hÓubaubcdocutils.nodes bullet_list qÛ)qÜ}qÝ(h&Uh'h$h(h)h*U bullet_listqÞh,}qß(UbulletqàX-h1]h0]h.]h/]h3]uh5K9h6hh!]qá(h€)qâ}qã(h&XRpromotion of data preservation through automated replication of data and metadata h'hÜh(h)h*hh,}qä(h.]h/]h0]h1]h3]uh5Nh6hh!]qåhC)qæ}qç(h&XQpromotion of data preservation through automated replication of data and metadataqèh'hâh(h)h*hFh,}qé(h.]h/]h0]h1]h3]uh5K9h!]qêh?XQpromotion of data preservation through automated replication of data and metadataqë…qì}qí(h&hèh'hæubaubaubh€)qî}qï(h&X_support for arbitrary globally unique identifiers with guaranteed resolution and dereferencing h'hÜh(h)h*hh,}qð(h.]h/]h0]h1]h3]uh5Nh6hh!]qñhC)qò}qó(h&X^support for arbitrary globally unique identifiers with guaranteed resolution and dereferencingqôh'hîh(h)h*hFh,}qõ(h.]h/]h0]h1]h3]uh5K`), and the content that is to be served. At a fundamental level, all content in DataONE is treated as discrete, immutable objects, each of which has a unique identifier. A Member Node would be considered functionally complete if it were able to support the required services interfaces for :term:`Tier 1` participation (i.e. public access, read only content), and so enable the discovery of all objects available on the Member Node (through :func:`MNRead.listObjects`), low level description of each object (through :func:`MNRead.getSystemMetadata`), retrieval of the object given it's identifier (:func:`MNRead.get`), and reporting of activity (:func:`MNCore.getLogRecords`).h'h$h(h)h*hFh,}r(h.]h/]h0]h1]h3]uh5KFh6hh!]r(h?X@Member Nodes are primarily existing data repositories (e.g. the r…r}r(h&X@Member Nodes are primarily existing data repositories (e.g. the h'jubhL)r }r!(h&X%`Knowledge Network for Biodiversity`_hOKh'jh*hPh,}r"(UnameX"Knowledge Network for BiodiversityhRXhttp://knb.ecoinformatics.org/r#h1]h0]h.]h/]h3]uh!]r$h?X"Knowledge Network for Biodiversityr%…r&}r'(h&Uh'j ubaubh?X, r(…r)}r*(h&X, h'jubhL)r+}r,(h&X `ORNL DAAC`_hOKh'jh*hPh,}r-(UnameX ORNL DAAChRXhttp://daac.ornl.gov/r.h1]h0]h.]h/]h3]uh!]r/h?X ORNL DAACr0…r1}r2(h&Uh'j+ubaubh?X, r3…r4}r5(h&X, h'jubhL)r6}r7(h&X>`Partnership for Interdisciplinary Studies of Coastal Oceans`_hOKh'jh*hPh,}r8(UnameX;Partnership for Interdisciplinary Studies of Coastal OceanshRXhttp://www.piscoweb.org/r9h1]h0]h.]h/]h3]uh!]r:h?X;Partnership for Interdisciplinary Studies of Coastal Oceansr;…r<}r=(h&Uh'j6ubaubh?X) that already fill an important role in their respective communities supporting data management, curation, discovery and access functions. There are two main technical aspects to Member Node participation in DataONE - the service interfaces to be implemented (i.e. the r>…r?}r@(h&X) that already fill an important role in their respective communities supporting data management, curation, discovery and access functions. There are two main technical aspects to Member Node participation in DataONE - the service interfaces to be implemented (i.e. the h'jubcsphinx.addnodes pending_xref rA)rB}rC(h&X&:doc:`Member Node APIs`rDh'jh(h)h*U pending_xrefrEh,}rF(UreftypeXdocrGUrefwarnrHˆU reftargetrIX /apis/MN_APIsU refdomainUh1]h0]U refexplicitˆh.]h/]h3]UrefdocrJXoverviewrKuh5KFh!]rLcdocutils.nodes inline rM)rN}rO(h&jDh,}rP(h.]h/]rQ(UxrefrRjGeh0]h1]h3]uh'jBh!]rSh?XMember Node APIsrT…rU}rV(h&Uh'jNubah*UinlinerWubaubh?X"), and the content that is to be served. At a fundamental level, all content in DataONE is treated as discrete, immutable objects, each of which has a unique identifier. A Member Node would be considered functionally complete if it were able to support the required services interfaces for rX…rY}rZ(h&X"), and the content that is to be served. At a fundamental level, all content in DataONE is treated as discrete, immutable objects, each of which has a unique identifier. A Member Node would be considered functionally complete if it were able to support the required services interfaces for h'jubjA)r[}r\(h&X:term:`Tier 1`r]h'jh(h)h*jEh,}r^(UreftypeXtermjHˆjIXtier 1U refdomainXstdr_h1]h0]U refexplicit‰h.]h/]h3]jJjKuh5KFh!]r`jM)ra}rb(h&j]h,}rc(h.]h/]rd(jRj_Xstd-termreeh0]h1]h3]uh'j[h!]rfh?XTier 1rg…rh}ri(h&Uh'jaubah*jWubaubh?X‰ participation (i.e. public access, read only content), and so enable the discovery of all objects available on the Member Node (through rj…rk}rl(h&X‰ participation (i.e. public access, read only content), and so enable the discovery of all objects available on the Member Node (through h'jubjA)rm}rn(h&X:func:`MNRead.listObjects`roh'jh(h)h*jEh,}rp(UreftypeXfuncjH‰jIXMNRead.listObjectsU refdomainXpyrqh1]h0]U refexplicit‰h.]h/]h3]jJjKUpy:classrrNU py:modulersNuh5KFh!]rtcdocutils.nodes literal ru)rv}rw(h&joh,}rx(h.]h/]ry(jRjqXpy-funcrzeh0]h1]h3]uh'jmh!]r{h?XMNRead.listObjects()r|…r}}r~(h&Uh'jvubah*Uliteralrubaubh?X1), low level description of each object (through r€…r}r‚(h&X1), low level description of each object (through h'jubjA)rƒ}r„(h&X :func:`MNRead.getSystemMetadata`r…h'jh(h)h*jEh,}r†(UreftypeXfuncjH‰jIXMNRead.getSystemMetadataU refdomainXpyr‡h1]h0]U refexplicit‰h.]h/]h3]jJjKjrNjsNuh5KFh!]rˆju)r‰}rŠ(h&j…h,}r‹(h.]h/]rŒ(jRj‡Xpy-funcreh0]h1]h3]uh'jƒh!]rŽh?XMNRead.getSystemMetadata()r…r}r‘(h&Uh'j‰ubah*jubaubh?X2), retrieval of the object given it's identifier (r’…r“}r”(h&X2), retrieval of the object given it's identifier (h'jubjA)r•}r–(h&X:func:`MNRead.get`r—h'jh(h)h*jEh,}r˜(UreftypeXfuncjH‰jIX MNRead.getU refdomainXpyr™h1]h0]U refexplicit‰h.]h/]h3]jJjKjrNjsNuh5KFh!]ršju)r›}rœ(h&j—h,}r(h.]h/]rž(jRj™Xpy-funcrŸeh0]h1]h3]uh'j•h!]r h?X MNRead.get()r¡…r¢}r£(h&Uh'j›ubah*jubaubh?X), and reporting of activity (r¤…r¥}r¦(h&X), and reporting of activity (h'jubjA)r§}r¨(h&X:func:`MNCore.getLogRecords`r©h'jh(h)h*jEh,}rª(UreftypeXfuncjH‰jIXMNCore.getLogRecordsU refdomainXpyr«h1]h0]U refexplicit‰h.]h/]h3]jJjKjrNjsNuh5KFh!]r¬ju)r­}r®(h&j©h,}r¯(h.]h/]r°(jRj«Xpy-funcr±eh0]h1]h3]uh'j§h!]r²h?XMNCore.getLogRecords()r³…r´}rµ(h&Uh'j­ubah*jubaubh?X).r¶…r·}r¸(h&X).h'jubeubhC)r¹}rº(h&XiThere are basically three types of object being made available by Member Nodes and processed by DataONE: :term:`data object`s, :term:`science metadata` objects, and :term:`resource map documents`. Each of these are identifiable by their unique identifier (PID), and each has associated System Metadata which describes the type, size, and so forth of the object.h'h$h(h)h*hFh,}r»(h.]h/]h0]h1]h3]uh5KWh6hh!]r¼(h?XiThere are basically three types of object being made available by Member Nodes and processed by DataONE: r½…r¾}r¿(h&XiThere are basically three types of object being made available by Member Nodes and processed by DataONE: h'j¹ubjA)rÀ}rÁ(h&X.:term:`data object`s, :term:`science metadata`rÂh'j¹h(h)h*jEh,}rÃ(UreftypeXtermjHˆjIX&data object`s, :term:`science metadataU refdomainXstdrÄh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5KWh!]rÅjM)rÆ}rÇ(h&jÂh,}rÈ(h.]h/]rÉ(jRjÄXstd-termrÊeh0]h1]h3]uh'jÀh!]rËh?X&data object`s, :term:`science metadatarÌ…rÍ}rÎ(h&Uh'jÆubah*jWubaubh?X objects, and rÏ…rÐ}rÑ(h&X objects, and h'j¹ubjA)rÒ}rÓ(h&X:term:`resource map documents`rÔh'j¹h(h)h*jEh,}rÕ(UreftypeXtermjHˆjIXresource map documentsU refdomainXstdrÖh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5KWh!]r×jM)rØ}rÙ(h&jÔh,}rÚ(h.]h/]rÛ(jRjÖXstd-termrÜeh0]h1]h3]uh'jÒh!]rÝh?Xresource map documentsrÞ…rß}rà(h&Uh'jØubah*jWubaubh?X¦. Each of these are identifiable by their unique identifier (PID), and each has associated System Metadata which describes the type, size, and so forth of the object.rá…râ}rã(h&X¦. Each of these are identifiable by their unique identifier (PID), and each has associated System Metadata which describes the type, size, and so forth of the object.h'j¹ubeubhC)rä}rå(h&XÆ:term:`Data objects` are treated as opaque blobs. The object availability is registered by the coordinating nodes, and the blob is retrievable via the :func:`MNRead.get` method given its identifier.h'h$h(h)h*hFh,}ræ(h.]h/]h0]h1]h3]uh5K]h6hh!]rç(jA)rè}ré(h&X:term:`Data objects`rêh'jäh(h)h*jEh,}rë(UreftypeXtermjHˆjIX data objectsU refdomainXstdrìh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5K]h!]ríjM)rî}rï(h&jêh,}rð(h.]h/]rñ(jRjìXstd-termròeh0]h1]h3]uh'jèh!]róh?X Data objectsrô…rõ}rö(h&Uh'jîubah*jWubaubh?Xƒ are treated as opaque blobs. The object availability is registered by the coordinating nodes, and the blob is retrievable via the r÷…rø}rù(h&Xƒ are treated as opaque blobs. The object availability is registered by the coordinating nodes, and the blob is retrievable via the h'jäubjA)rú}rû(h&X:func:`MNRead.get`rüh'jäh(h)h*jEh,}rý(UreftypeXfuncjH‰jIX MNRead.getU refdomainXpyrþh1]h0]U refexplicit‰h.]h/]h3]jJjKjrNjsNuh5K]h!]rÿju)r}r(h&jüh,}r(h.]h/]r(jRjþXpy-funcreh0]h1]h3]uh'júh!]rh?X MNRead.get()r…r}r(h&Uh'jubah*jubaubh?X method given its identifier.r …r }r (h&X method given its identifier.h'jäubeubhC)r }r (h&XÙ:term:`Science metadata` objects are metadata documents such as EML, FGDC, ISO19115 and so forth that provide metadata describing some data object(s). These are represented in XML according to their respective schema.h'h$h(h)h*hFh,}r(h.]h/]h0]h1]h3]uh5Kah6hh!]r(jA)r}r(h&X:term:`Science metadata`rh'j h(h)h*jEh,}r(UreftypeXtermjHˆjIXscience metadataU refdomainXstdrh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5Kah!]rjM)r}r(h&jh,}r(h.]h/]r(jRjXstd-termreh0]h1]h3]uh'jh!]rh?XScience metadatar…r}r(h&Uh'jubah*jWubaubh?XÁ objects are metadata documents such as EML, FGDC, ISO19115 and so forth that provide metadata describing some data object(s). These are represented in XML according to their respective schema.r…r }r!(h&XÁ objects are metadata documents such as EML, FGDC, ISO19115 and so forth that provide metadata describing some data object(s). These are represented in XML according to their respective schema.h'j ubeubhC)r"}r#(h&X¢:term:`Resource map` documents describe the relationships between data and metadata - they are basically RDF documents that conform to the OAI-ORE specifications.h'h$h(h)h*hFh,}r$(h.]h/]h0]h1]h3]uh5Keh6hh!]r%(jA)r&}r'(h&X:term:`Resource map`r(h'j"h(h)h*jEh,}r)(UreftypeXtermjHˆjIX resource mapU refdomainXstdr*h1]h0]U refexplicit‰h.]h/]h3]jJjKuh5Keh!]r+jM)r,}r-(h&j(h,}r.(h.]h/]r/(jRj*Xstd-termr0eh0]h1]h3]uh'j&h!]r1h?X Resource mapr2…r3}r4(h&Uh'j,ubah*jWubaubh?XŽ documents describe the relationships between data and metadata - they are basically RDF documents that conform to the OAI-ORE specifications.r5…r6}r7(h&XŽ documents describe the relationships between data and metadata - they are basically RDF documents that conform to the OAI-ORE specifications.h'j"ubeubhC)r8}r9(h&XÛFrom an object or class inheritance perspective, science metadata and resource maps might be considered specializations of the data object type in that more functionality is provided to DataONE by those types of object.r:h'h$h(h)h*hFh,}r;(h.]h/]h0]h1]h3]uh5Kih6hh!]r<h?XÛFrom an object or class inheritance perspective, science metadata and resource maps might be considered specializations of the data object type in that more functionality is provided to DataONE by those types of object.r=…r>}r?(h&j:h'j8ubaubhC)r@}rA(h&XæFrom a purely technical perspective, a Member Node may be completely functional and not provide any metadata or resource map documents. It will mean that the content provided will not be discoverable through the search interfaces.rBh'h$h(h)h*hFh,}rC(h.]h/]h0]h1]h3]uh5Kmh6hh!]rDh?XæFrom a purely technical perspective, a Member Node may be completely functional and not provide any metadata or resource map documents. It will mean that the content provided will not be discoverable through the search interfaces.rE…rF}rG(h&jBh'j@ubaubhC)rH}rI(h&X(Member Nodes may implement a subset of the full suite of :doc:`Member Node APIs`, and in this way participate in the network with minimal effort (e.g. as a "read only" or :term:`Tier 1` Member Node). Member Nodes that implement the full suite of APIs (a :term:`Tier 4` Member Node) will be able to accept data from other Member Nodes which in turn assists with data preservation by ensuring multiple copies of all content are available, thus reducing the risk that content will be lost or inaccessible if a Member Node should go offline.h'h$h(h)h*hFh,}rJ(h.]h/]h0]h1]h3]uh5Krh6hh!]rK(h?X9Member Nodes may implement a subset of the full suite of rL…rM}rN(h&X9Member Nodes may implement a subset of the full suite of h'jHubjA)rO}rP(h&X&:doc:`Member Node APIs`rQh'jHh(h)h*jEh,}rR(UreftypeXdocrSjHˆjIX /apis/MN_APIsU refdomainUh1]h0]U refexplicitˆh.]h/]h3]jJjKuh5Krh!]rTjM)rU}rV(h&jQh,}rW(h.]h/]rX(jRjSeh0]h1]h3]uh'jOh!]rYh?XMember Node APIsrZ…r[}r\(h&Uh'jUubah*jWubaubh?X[, and in this way participate in the network with minimal effort (e.g. as a "read only" or r]…r^}r_(h&X[, and in this way participate in the network with minimal effort (e.g. as a "read only" or h'jHubjA)r`}ra(h&X:term:`Tier 1`rbh'jHh(h)h*jEh,}rc(UreftypeXtermjHˆjIXtier 1U refdomainXstdrdh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5Krh!]rejM)rf}rg(h&jbh,}rh(h.]h/]ri(jRjdXstd-termrjeh0]h1]h3]uh'j`h!]rkh?XTier 1rl…rm}rn(h&Uh'jfubah*jWubaubh?XE Member Node). Member Nodes that implement the full suite of APIs (a ro…rp}rq(h&XE Member Node). Member Nodes that implement the full suite of APIs (a h'jHubjA)rr}rs(h&X:term:`Tier 4`rth'jHh(h)h*jEh,}ru(UreftypeXtermjHˆjIXtier 4U refdomainXstdrvh1]h0]U refexplicit‰h.]h/]h3]jJjKuh5Krh!]rwjM)rx}ry(h&jth,}rz(h.]h/]r{(jRjvXstd-termr|eh0]h1]h3]uh'jrh!]r}h?XTier 4r~…r}r€(h&Uh'jxubah*jWubaubh?X  Member Node) will be able to accept data from other Member Nodes which in turn assists with data preservation by ensuring multiple copies of all content are available, thus reducing the risk that content will be lost or inaccessible if a Member Node should go offline.r…r‚}rƒ(h&X  Member Node) will be able to accept data from other Member Nodes which in turn assists with data preservation by ensuring multiple copies of all content are available, thus reducing the risk that content will be lost or inaccessible if a Member Node should go offline.h'jHubeubhC)r„}r…(h&XõMember Nodes may eventually number in the thousands as progressively smaller repositories come online, perhaps even to the level of individual labs deploying their own Member Node to take advantage of the broad infrastructure enabled by DataONE.r†h'h$h(h)h*hFh,}r‡(h.]h/]h0]h1]h3]uh5K{h6hh!]rˆh?XõMember Nodes may eventually number in the thousands as progressively smaller repositories come online, perhaps even to the level of individual labs deploying their own Member Node to take advantage of the broad infrastructure enabled by DataONE.r‰…rŠ}r‹(h&j†h'j„ubaubhÀ)rŒ}r(h&X$[[ Coordinating Node APIs diagram ]]h'h$h(h)h*hÃh,}rŽ(hÅhÆh1]h0]h.]h/]h3]uh5K‚h6hh!]rh?X$[[ Coordinating Node APIs diagram ]]r…r‘}r’(h&Uh'jŒubaubhC)r“}r”(h&XûCoordinating Nodes make critical services available through the :doc:`APIs` that enable identifier resolution, data preservation, data discovery, and supplement the federated identity system. Coordinating Nodes replicate all content between themselves, an in doing so create a small set (3-6 nodes) of geographically and institutionally isolated systems that ensure ongoing operation of the infrastructure should any particular node be inaccessible. Coordinating Nodes maintain complete copies of all science metadata (detailed descriptions of science data objects and collections) and system metadata (low level metadata describing the type, size, ownership, and locations of data and) and index this information to enable data discovery services.h'h$h(h)h*hFh,}r•(h.]h/]h0]h1]h3]uh5Kƒh6hh!]r–(h?X@Coordinating Nodes make critical services available through the r—…r˜}r™(h&X@Coordinating Nodes make critical services available through the h'j“ubjA)rš}r›(h&X:doc:`APIs`rœh'j“h(h)h*jEh,}r(UreftypeXdocržjHˆjIX /apis/CN_APIsU refdomainUh1]h0]U refexplicitˆh.]h/]h3]jJjKuh5Kƒh!]rŸjM)r }r¡(h&jœh,}r¢(h.]h/]r£(jRjžeh0]h1]h3]uh'jšh!]r¤h?XAPIsr¥…r¦}r§(h&Uh'j ubah*jWubaubh?X¡ that enable identifier resolution, data preservation, data discovery, and supplement the federated identity system. Coordinating Nodes replicate all content between themselves, an in doing so create a small set (3-6 nodes) of geographically and institutionally isolated systems that ensure ongoing operation of the infrastructure should any particular node be inaccessible. Coordinating Nodes maintain complete copies of all science metadata (detailed descriptions of science data objects and collections) and system metadata (low level metadata describing the type, size, ownership, and locations of data and) and index this information to enable data discovery services.r¨…r©}rª(h&X¡ that enable identifier resolution, data preservation, data discovery, and supplement the federated identity system. Coordinating Nodes replicate all content between themselves, an in doing so create a small set (3-6 nodes) of geographically and institutionally isolated systems that ensure ongoing operation of the infrastructure should any particular node be inaccessible. Coordinating Nodes maintain complete copies of all science metadata (detailed descriptions of science data objects and collections) and system metadata (low level metadata describing the type, size, ownership, and locations of data and) and index this information to enable data discovery services.h'j“ubeubhÀ)r«}r¬(h&X%[[ ITK APIs and components diagram ]]h'h$h(h)h*hÃh,}r­(hÅhÆh1]h0]h.]h/]h3]uh5K‘h6hh!]r®h?X%[[ ITK APIs and components diagram ]]r¯…r°}r±(h&Uh'j«ubaubhC)r²}r³(h&X+Investigator Toolkit is a suite of software libraries, tools, and applications that support interaction with the DataONE infrastructure through the :doc:`REST` service APIs exposed by the :doc:`Coordinating` and :doc:`Member` Nodes. Low level libraries are initially available in Python and Java which assist application developers to take advantage of the core services exposed by DataONE participants. For example, an R plugin has been developed using the Java library. Enabling this plugin within a R script enables discovery, retrieval, and storage of content directly in the DataONE infrastructure. Similar extensions are being developed for workflow tools such as Kepler, VisTrails and Science Pipes to enable interaction with the core DataONE services.h'h$h(h)h*hFh,}r´(h.]h/]h0]h1]h3]uh5K’h6hh!]rµ(h?X”Investigator Toolkit is a suite of software libraries, tools, and applications that support interaction with the DataONE infrastructure through the r¶…r·}r¸(h&X”Investigator Toolkit is a suite of software libraries, tools, and applications that support interaction with the DataONE infrastructure through the h'j²ubjA)r¹}rº(h&X!:doc:`REST`r»h'j²h(h)h*jEh,}r¼(UreftypeXdocr½jHˆjIX/apis/REST_interfaceU refdomainUh1]h0]U refexplicitˆh.]h/]h3]jJjKuh5K’h!]r¾jM)r¿}rÀ(h&j»h,}rÁ(h.]h/]rÂ(jRj½eh0]h1]h3]uh'j¹h!]rÃh?XRESTrÄ…rÅ}rÆ(h&Uh'j¿ubah*jWubaubh?X service APIs exposed by the rÇ…rÈ}rÉ(h&X service APIs exposed by the h'j²ubjA)rÊ}rË(h&X":doc:`Coordinating`rÌh'j²h(h)h*jEh,}rÍ(UreftypeXdocrÎjHˆjIX /apis/CN_APIsU refdomainUh1]h0]U refexplicitˆh.]h/]h3]jJjKuh5K’h!]rÏjM)rÐ}rÑ(h&jÌh,}rÒ(h.]h/]rÓ(jRjÎeh0]h1]h3]uh'jÊh!]rÔh?X CoordinatingrÕ…rÖ}r×(h&Uh'jÐubah*jWubaubh?X and rØ…rÙ}rÚ(h&X and h'j²ubjA)rÛ}rÜ(h&X:doc:`Member`rÝh'j²h(h)h*jEh,}rÞ(UreftypeXdocrßjHˆjIX /apis/MN_APIsU refdomainUh1]h0]U refexplicitˆh.]h/]h3]jJjKuh5K’h!]ràjM)rá}râ(h&jÝh,}rã(h.]h/]rä(jRjßeh0]h1]h3]uh'jÛh!]råh?XMemberræ…rç}rè(h&Uh'jáubah*jWubaubh?X Nodes. Low level libraries are initially available in Python and Java which assist application developers to take advantage of the core services exposed by DataONE participants. For example, an R plugin has been developed using the Java library. Enabling this plugin within a R script enables discovery, retrieval, and storage of content directly in the DataONE infrastructure. Similar extensions are being developed for workflow tools such as Kepler, VisTrails and Science Pipes to enable interaction with the core DataONE services.ré…rê}rë(h&X Nodes. Low level libraries are initially available in Python and Java which assist application developers to take advantage of the core services exposed by DataONE participants. For example, an R plugin has been developed using the Java library. Enabling this plugin within a R script enables discovery, retrieval, and storage of content directly in the DataONE infrastructure. Similar extensions are being developed for workflow tools such as Kepler, VisTrails and Science Pipes to enable interaction with the core DataONE services.h'j²ubeubhC)rì}rí(h&XpThe DataONE infrastructure was released for public use in July 2012 and at that point supported identifier resolution, content discovery and retrieval and the federated identity management infrastructure. The replication service was implemented with release 1.1 of the infrastructure which occurred in May of 2013 and completed the core services of the infrastructure.rîh'h$h(h)h*hFh,}rï(h.]h/]h0]h1]h3]uh5KŸh6hh!]rðh?XpThe DataONE infrastructure was released for public use in July 2012 and at that point supported identifier resolution, content discovery and retrieval and the federated identity management infrastructure. The replication service was implemented with release 1.1 of the infrastructure which occurred in May of 2013 and completed the core services of the infrastructure.rñ…rò}ró(h&jîh'jìubaubcdocutils.nodes target rô)rõ}rö(h&XH.. _DataNet program: http://www.nsf.gov/pubs/2007/nsf07601/nsf07601.htmU referencedr÷Kh'h$h(h)h*Utargetrøh,}rù(hRhSh1]rúh ah0]h.]h/]h3]rûhauh5K¦h6hh!]ubjô)rü}rý(h&XN.. _Cyberinfrastructure Vision: http://www.nsf.gov/pubs/2007/nsf0728/index.jspj÷Kh'h$h(h)h*jøh,}rþ(hRh^h1]rÿhah0]h.]h/]h3]rhauh5K¨h6hh!]ubjô)r}r(h&X .. _DataONE: http://dataone.org/j÷Kh'h$h(h)h*jøh,}r(hRhih1]rhah0]h.]h/]h3]rh auh5Kªh6hh!]ubjô)r}r(h&X .. _Dryad: http://datadryad.org/h'h$h(h)h*jøh,}r(hRXhttp://datadryad.org/h1]r hah0]h.]h/]h3]r h auh5K¬h6hh!]ubjô)r }r (h&XY.. _Partnership for Interdisciplinary Studies of Coastal Oceans: http://www.piscoweb.org/j÷Kh'h$h(h)h*jøh,}r (hRj9h1]rhah0]h.]h/]h3]rh auh5K®h6hh!]ubjô)r}r(h&XF.. _Knowledge Network for Biodiversity: http://knb.ecoinformatics.org/j÷Kh'h$h(h)h*jøh,}r(hRj#h1]rhah0]h.]h/]h3]rh auh5K°h6hh!]ubjô)r}r(h&X$.. _ORNL DAAC: http://daac.ornl.gov/j÷Kh'h$h(h)h*jøh,}r(hRj.h1]rhah0]h.]h/]h3]rhauh5K²h6hh!]ubjô)r}r(h&XH.. _NBII Metadata Clearing House: http://mercury.ornl.gov/clearinghouse/h'h$h(h)h*jøh,}r(hRX&http://mercury.ornl.gov/clearinghouse/h1]rhah0]h.]h/]h3]rhauh5K´h6hh!]ubeubah&UU transformerrNU footnote_refsr }r!Urefnamesr"}r#(Xcyberinfrastructure vision]r$h[aXdataone]r%hfaX"knowledge network for biodiversity]r&j aX ornl daac]r'j+aX;partnership for interdisciplinary studies of coastal oceans]r(j6aXdatanet program]r)hMauUsymbol_footnotesr*]r+Uautofootnote_refsr,]r-Usymbol_footnote_refsr.]r/U citationsr0]r1h6hU current_liner2NUtransform_messagesr3]r4(cdocutils.nodes system_message r5)r6}r7(h&Uh,}r8(h.]UlevelKh1]h0]Usourceh)h/]h3]UlineK¬UtypeUINFOr9uh!]r:hC)r;}r<(h&Uh,}r=(h.]h/]h0]h1]h3]uh'j6h!]r>h?X+Hyperlink target "dryad" is not referenced.r?…r@}rA(h&Uh'j;ubah*hFubah*Usystem_messagerBubj5)rC}rD(h&Uh,}rE(h.]UlevelKh1]h0]Usourceh)h/]h3]UlineK´Utypej9uh!]rFhC)rG}rH(h&Uh,}rI(h.]h/]h0]h1]h3]uh'jCh!]rJh?XBHyperlink target "nbii metadata clearing house" is not referenced.rK…rL}rM(h&Uh'jGubah*hFubah*jBubeUreporterrNNUid_startrOKU autofootnotesrP]rQU citation_refsrR}rSUindirect_targetsrT]rUUsettingsrV(cdocutils.frontend Values rWorX}rY(Ufootnote_backlinksrZKUrecord_dependenciesr[NU rfc_base_urlr\Uhttps://tools.ietf.org/html/r]U tracebackr^ˆUpep_referencesr_NUstrip_commentsr`NU toc_backlinksraUentryrbU language_codercUenrdU datestampreNU report_levelrfKU _destinationrgNU halt_levelrhKU strip_classesriNh