Polaris Project 2017: Permafrost carbon and nitrogen, Yukon-Kuskokwim Delta, Alaska
    
      
        Sarah
        Ludwig
      
      Woods Hole Research Center
      Lab Manager/Research Assistant
      
          735 State St.
          Suite 300
          Santa Barbara
          CA
          93101
          USA
      
      805-893-2500
      sludwig@whrc.org
      https://orcid.org/0000-0002-2873-479X
    
    
      
        Robert
        Holmes
      
      Woods Hole Research Center
      rmholmes@whrc.org
      https://orcid.org/0000-0000-0000-0000
    
    
      
        Susan
        Natali
      
      Woods Hole Research Center
      snatali@whrc.org
      https://orcid.org/0000-0000-0000-0000
    
    
      
        Paul
        Mann
      
      paul.mann@northumbria.ac.uk
      https://orcid.org/0000-0000-0000-0000
    
    
      
        John
        Schade
      
      Woods Hole Research Center
      jschade@whrc.org
      https://orcid.org/0000-0000-0000-0000
    
    
      
        Laura
        Jardine
      
      lejardine@my.okcu.edu
      https://orcid.org/0000-0000-0000-0000
    
    
      
        Sarah
        Ludwig
      
      Woods Hole Research Center
      Lab Manager/Research Assistant
      sludwig@whrc.org
      https://orcid.org/0000-0002-2873-479X
    
    
      
        Robert
        Holmes
      
      Woods Hole Research Center
      rmholmes@whrc.org
      https://orcid.org/0000-0000-0000-0000
      principalInvestigator
    
    
      
        Susan
        Natali
      
      Woods Hole Research Center
      snatali@whrc.org
      https://orcid.org/0000-0000-0000-0000
      coPrincipalInvestigator
    
    
      
        Paul
        Mann
      
      paul.mann@northumbria.ac.uk
      https://orcid.org/0000-0000-0000-0000
      coPrincipalInvestigator
    
    2018
    
      This project is integrating scientific research in the Arctic with education and outreach, with a strong central focus on engaging undergraduate students and visiting faculty from groups that have had little involvement in Arctic science to date. The central element of the project is a month-long research expedition to the Yukon River Delta in Alaska. The expedition provides a deep intellectual and cultural immersion in the context of an authentic research experience that is paramount for "hooking" students and keeping them moving along the pipeline to careers as Arctic scientists. The overarching scientific issue that drives the research is the vulnerability and fate of ancient carbon stored in Arctic permafrost (permanently frozen ground). Widespread permafrost thaw is expected to occur this century, but large uncertainties remain in estimating the timing, magnitude, and form of carbon that will be released when thawed. Project participants are working in collaborative research groups to make fundamental scientific discoveries related to the vulnerability of permafrost carbon in the Yukon River Delta and the potential implications of permafrost thaw in this region for the global climate system. This data set includes permafrost cores, with ammonium, nitrate, volumetric ice content, N mineralization rates, %C, and %N results from the 2017 expedition.
      
    
    
      arctic
      sediment
      carbon
      nitrogen
      fire
      alaska
      None
    
    
        Creative Commons Attribution 4.0 International
        https://spdx.org/licenses/CC-BY-4.0.html
        CC-BY-4.0
    
    
      
        These data are from the Yukon-Kuskokwim River Delta, Alaska, approximately halfway between Bethel and St. Mary's. The region recently burned in 2015 and has older burns from 1972. The area is flat with numerous lakes and wetlands. Terrestrial landscapes are peat plateaus roughly 1-3 meters above wetlands, stream, and lakes. All of these samples are from lake sediment cores. 
        
          -163.3736
          -162.3953
          61.3053
          61.1861
        
      
      
        
          
            2017-06-25
          
          
            2017-08-06
          
        
      
    
    
        http://purl.org/dc/elements/1.1/subject
        http://purl.obolibrary.org/obo/ENVO_01000177
    
    
        
            A synopsis of the dataset describes its purpose and contents, including
            one or more paragraphs as well as table(s) and figure(s) that summarize
            the data included in the data paper, including a summary of key findings
            if appropriate.
        
    
    
        
            An introduction goes here.
            It can include multiple paragraphs. And these paragraphs should have enough text to wrap in a wide browser.  So, repeat that last thought. And these paragraphs should have enough text to wrap in a wide browser.  So, repeat that last thought.
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            as either the citation identifier in a `bibtex` element in the EML document, or as the `id` attribute on
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            such as Pandoc will readily convert these citations and citation entries into various formats, including HTML, PDF,
            and others.
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            Plus, it can include all of the other features of [Github Flavored Markdown (GFM)](https://github.github.com/gfm/).
        
    
    
        
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            of markdown text defines the starting column for all subsequent indenting.
            ## Level 2 heading
            We use a level 2 heading because Level 1 would be at the same level as
            the main sections of the paper.
            ## Another level 2 heading
            With some information.
        
    
    
        Many thanks to the field staff and volunteers involved in collecting and compiling data on swallow breeding phenology and performance (in alphabetical order): E. Beaton, T. Bryant, L. Burke, M, Courtenay, B. Crosby, D. Farrar, S. Lau, A. MacDonald, H. Mann, A. McKeen, D. Nickerson, N. Sobhani, and staff from Environment and Climate Change Canada. In addition, we would like to thank all the volunteers who contributed to the Maritime Nest Records Scheme. We also thank all the private landowners, Acadia University, Ducks Unlimited Canada, Environment and Climate Change Canada, and Parks Canada for permitting access to their properties for field research. Special thanks to P. Thomas and B. Whittam at Environment and Climate Change Canada for supporting this work, A. Smith at Environment and Climate Change Canada for helpful discussions on BBS trends, and to A. Horn, A. Smith, J. Sauer, and two anonymous reviewers for providing helpful comments on earlier drafts. Funding was provided by (in alphabetical order) the Canadian Wildlife Federation, Environment and Climate Change Canada, the Natural Science and Engineering Research Council of Canada, New Brunswick Wildlife Trust Fund, Nova Scotia Habitat Conservation Fund, and Wildlife Preservation Canada. This represents Bowdoin Scientific Station contribution no. 2589.
    
    
      
        Sarah
        Ludwig
      
      Woods Hole Research Center
      Lab Manager/Research Assistant
      sludwig@whrc.org
      https://orcid.org/0000-0002-2873-479X
    
    
      
        
          
            Permafrost Cores
            Thawed horizon was excavated, and frozen cores were drilled using a SIPRE drill. Samples were cleaned, wrapped, and kept frozen until analysis in the lab. Samples were sectioned by horizon or split such that each subsection was not longer than ~10 cm. Each subsection was analyzed for bulk density, soil moisture, soil organic carbon, %N, %C, volumetric ice content, extracted with 2 M KCl for NO3, and NH4. Additionally, net nitrogen mineralization rates were measured by similarly extracting subsamples that incubated for 30 days.
          
        
      
      
        
          
            All samples were collected in June 2017. Samples were collected in unburned peat plateaus, as well as those that burned in 2015 and 1972. Locations of samples within each site was selected randomly.
          
        
        
          Site locations were chosen such that they were within either hiking distance or a short helicopter flight from our basecamp.
        
      
      
          
            Samples were verified by resampling 5% of all physical samples by an independent observer, and comparing results for
                inter-observer consistency.
          
      
    
    
      Polaris: Catalyzing Demographic Change in the Arctic Research Community through an Immersive and Sustained Undergraduate Research Experience
      
        
          Sarah
          Ludwig
        
        originator
      
      
        
          Robert
          Holmes
        
        Principal Investigator
      
      
        
          Paul
          Mann
        
        Co-Principal Investigator
      
      
        
          Ambrose
          Jearld
        
        Co-Principal Investigator
      
      
        
          Susan
          Natali
        
        Co-Principal Investigator
      
      
        
          John
          Schade
        
        Former Co-Principal Investigator
      
      
          National Science Foundation
          https://doi.org/10.13039/00000001
          1546024
          Scientia Arctica: A Knowledge Archive for Discovery and Reproducible Science in the Arctic
          https://www.nsf.gov/awardsearch/showAward?AWD_ID=1546024
      
    
    
      Polaris_2017_Permafrost.csv
      This data set includes permafrost cores, with ammonium, nitrate, volumetric ice content, N mineralization rates, %C, and %N results from the 2017 expedition
      
        Polaris_2017_Permafrost.csv
        17172
        ce9f97dd4f1cee964faf02942a34383ae31da1f5
        
          
            text/csv
          
        
        
          
            https://cn.dataone.org/cn/v2/resolve/urn:uuid:ec704da8-f174-49db-b993-bae479cdc5d9
          
        
      
      
        
          Date
          Sample collection year
          
            
              YYYY
            
          
        
        
          Sample ID
          Unique identifier that is a combination of site name, core number, and subsection number
          
            
              
                
                  Unique identifier that is a combination of site name, core number, and subsection number
                
              
            
          
        
        
          Site ID
          72B = 1972 burn, B = 2015 burn, U = unburned, number corresponds to replicate
          
            
              
                
                  72B = 1972 burn, B = 2015 burn, U = unburned, number corresponds to replicate
                
              
            
          
        
        
          Landcover type
          Landcover type. Either peat plateau, fen, or drained lake
          
            
              
                
                  Landcover type. Either peat plateau, fen, or drained lake
                
              
            
          
        
        
          Burn history
          Old burn corresponds to 1972 fires, recent burn to 2015 fires
          
            
              
                
                  Old burn corresponds to 1972 fires, recent burn to 2015 fires
                
              
            
          
        
        
          Latitude
          Latitude of collection site
          
            
              
                arc_degree
              
              
                real
              
            
          
        
        
          Longitude
          Longitude of collection site
          
            
              
                arc_degree
              
              
                real
              
            
          
        
        
          Thaw depth (cm) =moss+OL
          Thaw depth measured in soil pit, includes live moss/lichen layer + thawed organic layer below
          
            
              
                centimeter
              
              
                natural
              
            
          
        
        
          Moss/lichen depth (cm)
          Depth of live moss/lichen layer on top of organic layer
          
            
              
                centimeter
              
              
                whole
              
            
          
        
        
          Thawed soil depth (cm)
          Soil depth is thawed layer (here all organic) below live moss/lichen layer
          
            
              
                centimeter
              
              
                natural
              
            
          
        
        
          section top (cm)
          Top of frozen subsection (0 cm means beginning of frozen ground)
          
            
              
                centimeter
              
              
                whole
              
            
          
        
        
          section bottom (cm)
          Bottom of frozen section (mostly in 10 cm increments)
          
            
              
                centimeter
              
              
                real
              
            
          
        
        
          section height (cm)
          Length of subsection used for subsequent analyses. Sometimes the 10cm segment was further split
          
            
              
                centimeter
              
              
                real
              
            
          
        
        
          actual top (cm)
          Adjusts frozen core depth by adding thaw depth and accoutning for when sections are split to accurately place sample in the soil profile
          
            
              
                centimeter
              
              
                natural
              
            
          
        
        
          actual bottom (cm)
          Adjusts frozen core depth by adding thaw depth and accoutning for when sections are split to accurately place sample in the soil profile
          
            
              
                centimeter
              
              
                real
              
            
          
        
        
          Sample type
          Since we sampled in July, some of the frozen soil we drilled is actually active layer and some is permafrost. We used our average September thaw depths from other studies to estimate frozen active layer depth cutoffs
          
            
              
                
                  Since we sampled in July, some of the frozen soil we drilled is actually active layer and some is permafrost. We used our average September thaw depths from other studies to estimate frozen active layer depth cutoffs
                
              
            
          
        
        
          Bulk Density (g/cm3)
          Bulk density of the sample: Dry weight/volume
          
            
              
                gramsPerCubicCentimeter
              
              
                real
              
            
          
        
        
          soil moisture %
          Percent moisture in the soil: (wet - dry weight)/wet weight * 100
          
            
              
                dimensionless
              
              
                real
              
            
          
        
        
          GWC g/g
          Gravimetric water content in the sediment: (wet-dry weight)/dry weight
          
            
              
                gramsPerGram
              
              
                real
              
            
          
        
        
          VIC (cm3/cm3)
          Volumetric ice content: GWC * bulk density * 0.9167 g/cm3
          
            
              
                cubicCentimetersPerCubicCentimeters
              
              
                real
              
            
          
        
        
          SOM %
          Percent soil organic matter measured by loss on ignition
          
            
              
                dimensionless
              
              
                real
              
            
          
        
        
          C mg/mg
          Proportion carbon in dry soil
          
            
              
                milligramsPerMilligram
              
              
                real
              
            
          
        
        
          N mg/mg
          Proportion nitrogen in dry soil
          
            
              
                milligramsPerMilligram
              
              
                real
              
            
          
        
        
          C/N
          Ratio of carbon to nitrogen in dry soil
          
            
              
                dimensionless
              
              
                real
              
            
          
        
        
          NH4 (ug/g-soil)
          Concentration of ammonium in dry soil from 2M KCl extractions
          
            
              
                microgramsPerGramSoil
              
              
                real
              
            
          
        
        
          NO3 (ug/g-soil)
          Concentration of nitrate in dry soil from 2M KCl extractions
          
            
              
                microgramsPerGramSoil
              
              
                whole
              
            
          
        
        
          Net N mineralization rate (ugN/g-soil/day)
          Net nitrogen mineralization rate measured by incubating soils for 30 days and extracting with 2M KCl
          
            
              
                microgramsPerGramSoilPerDay
              
              
                real
              
            
          
          
            "NA"
            NA corresponds to not measured
          
        
        
          Frozen DIN N-mg/m2
          Soil dissolved inorganic nitrogen pool scaled to segment height
          
            
              
                milligramsPerSquareMeter
              
              
                real
              
            
          
        
        
          Frozen N g/m2
          Soil total nitrogen pool scaled segment height
          
            
              
                gramsPerSquareMeter
              
              
                real
              
            
          
        
        
          Frozen C g/m2
          Soil carbon pool scaled to segment height
          
            
              
                gramsPerSquareMeter
              
              
                real
              
            
          
        
      
    
    
        
            @article{ludwig_2018,
                title = {Permafrost carbon and nitrogen, Yukon-Kuskokwim Delta, Alaska},
                url = {http://ecosphere.esa.org/article/yyyy.zzzzzzz},
                doi = {10.xxxx/yyyy.zzzzzz},
                journal = {EcoSphere},
                author = {Ludwig, Sarah},
                year = {2018}
            }
        
    
    
        
            @article{jones_2001,
                title = {Managing scientific metadata},
                volume = {5},
                issn = {10897801},
                url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=957896},
                doi = {10.1109/4236.957896},
                number = {5},
                journal = {IEEE Internet Computing},
                author = {Jones, Matthew B. and Berkley, Chad and Bojilova, Jivka and Schildhauer, Mark},
                year = {2001},
                pages = {59--68}
            }
        
    
    
        
            
                @article{fegraus_2005,
                     title = {Maximizing the {Value} of {Ecological} {Data} with {Structured} {Metadata}: {An} {Introduction} to {Ecological} {Metadata} {Language} ({EML}) and {Principles} for {Metadata} {Creation}},
                     journal = {Bulletin of the Ecological Society of America},
                     author = {Fegraus, Eric H. and Andelman, Sandy and Jones, Matthew B. and Schildhauer, Mark},
                     year = {2005},
                     pages = {158--168}
                 }
            
        
        
            Title for a paper that used this dataset.
            
                
                    Mark
                    Jarkady
                
            
            2017
            
                EcoSphere
                https://doi.org/10.1002/ecs2.2166
            
        
        
        @article{hampton_2017,
            title = {Skills and {Knowledge} for {Data}-{Intensive} {Environmental} {Research}},
            volume = {67},
            copyright = {All rights reserved},
            issn = {0006-3568, 1525-3244},
            url = {https://academic.oup.com/bioscience/article-lookup/doi/10.1093/biosci/bix025},
            doi = {10.1093/biosci/bix025},
            language = {en},
            number = {6},
            urldate = {2018-02-15},
            journal = {BioScience},
            author = {Hampton, Stephanie E. and Jones, Matthew B. and Wasser, Leah A. and Schildhauer, Mark P. and Supp, Sarah R. and Brun, Julien and Hernandez, Rebecca R. and Boettiger, Carl and Collins, Scott L. and Gross, Louis J. and Fernández, Denny S. and Budden, Amber and White, Ethan P. and Teal, Tracy K. and Labou, Stephanie G. and Aukema, Juliann E.},
            month = jun,
            year = {2017},
            pages = {546--557}
        }
        @article{brinckman_2018,
            title = {Computing environments for reproducibility: {Capturing} the “{Whole} {Tale}”},
            copyright = {All rights reserved},
            issn = {0167739X},
            shorttitle = {Computing environments for reproducibility},
            url = {http://linkinghub.elsevier.com/retrieve/pii/S0167739X17310695},
            doi = {10.1016/j.future.2017.12.029},
            language = {en},
            urldate = {2018-04-16},
            journal = {Future Generation Computer Systems},
            author = {Brinckman, Adam and Chard, Kyle and Gaffney, Niall and Hategan, Mihael and Jones, Matthew B. and Kowalik, Kacper and Kulasekaran, Sivakumar and Ludäscher, Bertram and Mecum, Bryce D. and Nabrzyski, Jarek and Stodden, Victoria and Taylor, Ian J. and Turk, Matthew J. and Turner, Kandace},
            month = feb,
            year = {2018}
        }
        @article{collins_2018,
            title = {Temporal heterogeneity increases with spatial heterogeneity in ecological communities},
            volume = {99},
            copyright = {All rights reserved},
            issn = {00129658},
            url = {http://doi.wiley.com/10.1002/ecy.2154},
            doi = {10.1002/ecy.2154},
            language = {en},
            number = {4},
            urldate = {2018-04-16},
            journal = {Ecology},
            author = {Collins, Scott L. and Avolio, Meghan L. and Gries, Corinna and Hallett, Lauren M. and Koerner, Sally E. and La Pierre, Kimberly J. and Rypel, Andrew L. and Sokol, Eric R. and Fey, Samuel B. and Flynn, Dan F. B. and Jones, Sydney K. and Ladwig, Laura M. and Ripplinger, Julie and Jones, Matt B.},
            month = apr,
            year = {2018},
            pages = {858--865}
        }