Polaris Project 2017: Permafrost carbon and nitrogen, Yukon-Kuskokwim Delta, Alaska
Sarah
Ludwig
Woods Hole Research Center
Lab Manager/Research Assistant
735 State St.
Suite 300
Santa Barbara
CA
93101
USA
805-893-2500
sludwig@whrc.org
https://orcid.org/0000-0002-2873-479X
Robert
Holmes
Woods Hole Research Center
rmholmes@whrc.org
https://orcid.org/0000-0000-0000-0000
Susan
Natali
Woods Hole Research Center
snatali@whrc.org
https://orcid.org/0000-0000-0000-0000
Paul
Mann
paul.mann@northumbria.ac.uk
https://orcid.org/0000-0000-0000-0000
John
Schade
Woods Hole Research Center
jschade@whrc.org
https://orcid.org/0000-0000-0000-0000
Laura
Jardine
lejardine@my.okcu.edu
https://orcid.org/0000-0000-0000-0000
Sarah
Ludwig
Woods Hole Research Center
Lab Manager/Research Assistant
sludwig@whrc.org
https://orcid.org/0000-0002-2873-479X
Robert
Holmes
Woods Hole Research Center
rmholmes@whrc.org
https://orcid.org/0000-0000-0000-0000
principalInvestigator
Susan
Natali
Woods Hole Research Center
snatali@whrc.org
https://orcid.org/0000-0000-0000-0000
coPrincipalInvestigator
Paul
Mann
paul.mann@northumbria.ac.uk
https://orcid.org/0000-0000-0000-0000
coPrincipalInvestigator
2018
This project is integrating scientific research in the Arctic with education and outreach, with a strong central focus on engaging undergraduate students and visiting faculty from groups that have had little involvement in Arctic science to date. The central element of the project is a month-long research expedition to the Yukon River Delta in Alaska. The expedition provides a deep intellectual and cultural immersion in the context of an authentic research experience that is paramount for "hooking" students and keeping them moving along the pipeline to careers as Arctic scientists. The overarching scientific issue that drives the research is the vulnerability and fate of ancient carbon stored in Arctic permafrost (permanently frozen ground). Widespread permafrost thaw is expected to occur this century, but large uncertainties remain in estimating the timing, magnitude, and form of carbon that will be released when thawed. Project participants are working in collaborative research groups to make fundamental scientific discoveries related to the vulnerability of permafrost carbon in the Yukon River Delta and the potential implications of permafrost thaw in this region for the global climate system. This data set includes permafrost cores, with ammonium, nitrate, volumetric ice content, N mineralization rates, %C, and %N results from the 2017 expedition.
arctic
sediment
carbon
nitrogen
fire
alaska
None
Creative Commons Attribution 4.0 International
https://spdx.org/licenses/CC-BY-4.0.html
CC-BY-4.0
These data are from the Yukon-Kuskokwim River Delta, Alaska, approximately halfway between Bethel and St. Mary's. The region recently burned in 2015 and has older burns from 1972. The area is flat with numerous lakes and wetlands. Terrestrial landscapes are peat plateaus roughly 1-3 meters above wetlands, stream, and lakes. All of these samples are from lake sediment cores.
-163.3736
-162.3953
61.3053
61.1861
2017-06-25
2017-08-06
http://purl.org/dc/elements/1.1/subject
http://purl.obolibrary.org/obo/ENVO_01000177
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Many thanks to the field staff and volunteers involved in collecting and compiling data on swallow breeding phenology and performance (in alphabetical order): E. Beaton, T. Bryant, L. Burke, M, Courtenay, B. Crosby, D. Farrar, S. Lau, A. MacDonald, H. Mann, A. McKeen, D. Nickerson, N. Sobhani, and staff from Environment and Climate Change Canada. In addition, we would like to thank all the volunteers who contributed to the Maritime Nest Records Scheme. We also thank all the private landowners, Acadia University, Ducks Unlimited Canada, Environment and Climate Change Canada, and Parks Canada for permitting access to their properties for field research. Special thanks to P. Thomas and B. Whittam at Environment and Climate Change Canada for supporting this work, A. Smith at Environment and Climate Change Canada for helpful discussions on BBS trends, and to A. Horn, A. Smith, J. Sauer, and two anonymous reviewers for providing helpful comments on earlier drafts. Funding was provided by (in alphabetical order) the Canadian Wildlife Federation, Environment and Climate Change Canada, the Natural Science and Engineering Research Council of Canada, New Brunswick Wildlife Trust Fund, Nova Scotia Habitat Conservation Fund, and Wildlife Preservation Canada. This represents Bowdoin Scientific Station contribution no. 2589.
Sarah
Ludwig
Woods Hole Research Center
Lab Manager/Research Assistant
sludwig@whrc.org
https://orcid.org/0000-0002-2873-479X
Permafrost Cores
Thawed horizon was excavated, and frozen cores were drilled using a SIPRE drill. Samples were cleaned, wrapped, and kept frozen until analysis in the lab. Samples were sectioned by horizon or split such that each subsection was not longer than ~10 cm. Each subsection was analyzed for bulk density, soil moisture, soil organic carbon, %N, %C, volumetric ice content, extracted with 2 M KCl for NO3, and NH4. Additionally, net nitrogen mineralization rates were measured by similarly extracting subsamples that incubated for 30 days.
All samples were collected in June 2017. Samples were collected in unburned peat plateaus, as well as those that burned in 2015 and 1972. Locations of samples within each site was selected randomly.
Site locations were chosen such that they were within either hiking distance or a short helicopter flight from our basecamp.
Samples were verified by resampling 5% of all physical samples by an independent observer, and comparing results for
inter-observer consistency.
Polaris: Catalyzing Demographic Change in the Arctic Research Community through an Immersive and Sustained Undergraduate Research Experience
Sarah
Ludwig
originator
Robert
Holmes
Principal Investigator
Paul
Mann
Co-Principal Investigator
Ambrose
Jearld
Co-Principal Investigator
Susan
Natali
Co-Principal Investigator
John
Schade
Former Co-Principal Investigator
National Science Foundation
https://doi.org/10.13039/00000001
1546024
Scientia Arctica: A Knowledge Archive for Discovery and Reproducible Science in the Arctic
https://www.nsf.gov/awardsearch/showAward?AWD_ID=1546024
Polaris_2017_Permafrost.csv
This data set includes permafrost cores, with ammonium, nitrate, volumetric ice content, N mineralization rates, %C, and %N results from the 2017 expedition
Polaris_2017_Permafrost.csv
17172
ce9f97dd4f1cee964faf02942a34383ae31da1f5
text/csv
https://cn.dataone.org/cn/v2/resolve/urn:uuid:ec704da8-f174-49db-b993-bae479cdc5d9
Date
Sample collection year
YYYY
Sample ID
Unique identifier that is a combination of site name, core number, and subsection number
Unique identifier that is a combination of site name, core number, and subsection number
Site ID
72B = 1972 burn, B = 2015 burn, U = unburned, number corresponds to replicate
72B = 1972 burn, B = 2015 burn, U = unburned, number corresponds to replicate
Landcover type
Landcover type. Either peat plateau, fen, or drained lake
Landcover type. Either peat plateau, fen, or drained lake
Burn history
Old burn corresponds to 1972 fires, recent burn to 2015 fires
Old burn corresponds to 1972 fires, recent burn to 2015 fires
Latitude
Latitude of collection site
arc_degree
real
Longitude
Longitude of collection site
arc_degree
real
Thaw depth (cm) =moss+OL
Thaw depth measured in soil pit, includes live moss/lichen layer + thawed organic layer below
centimeter
natural
Moss/lichen depth (cm)
Depth of live moss/lichen layer on top of organic layer
centimeter
whole
Thawed soil depth (cm)
Soil depth is thawed layer (here all organic) below live moss/lichen layer
centimeter
natural
section top (cm)
Top of frozen subsection (0 cm means beginning of frozen ground)
centimeter
whole
section bottom (cm)
Bottom of frozen section (mostly in 10 cm increments)
centimeter
real
section height (cm)
Length of subsection used for subsequent analyses. Sometimes the 10cm segment was further split
centimeter
real
actual top (cm)
Adjusts frozen core depth by adding thaw depth and accoutning for when sections are split to accurately place sample in the soil profile
centimeter
natural
actual bottom (cm)
Adjusts frozen core depth by adding thaw depth and accoutning for when sections are split to accurately place sample in the soil profile
centimeter
real
Sample type
Since we sampled in July, some of the frozen soil we drilled is actually active layer and some is permafrost. We used our average September thaw depths from other studies to estimate frozen active layer depth cutoffs
Since we sampled in July, some of the frozen soil we drilled is actually active layer and some is permafrost. We used our average September thaw depths from other studies to estimate frozen active layer depth cutoffs
Bulk Density (g/cm3)
Bulk density of the sample: Dry weight/volume
gramsPerCubicCentimeter
real
soil moisture %
Percent moisture in the soil: (wet - dry weight)/wet weight * 100
dimensionless
real
GWC g/g
Gravimetric water content in the sediment: (wet-dry weight)/dry weight
gramsPerGram
real
VIC (cm3/cm3)
Volumetric ice content: GWC * bulk density * 0.9167 g/cm3
cubicCentimetersPerCubicCentimeters
real
SOM %
Percent soil organic matter measured by loss on ignition
dimensionless
real
C mg/mg
Proportion carbon in dry soil
milligramsPerMilligram
real
N mg/mg
Proportion nitrogen in dry soil
milligramsPerMilligram
real
C/N
Ratio of carbon to nitrogen in dry soil
dimensionless
real
NH4 (ug/g-soil)
Concentration of ammonium in dry soil from 2M KCl extractions
microgramsPerGramSoil
real
NO3 (ug/g-soil)
Concentration of nitrate in dry soil from 2M KCl extractions
microgramsPerGramSoil
whole
Net N mineralization rate (ugN/g-soil/day)
Net nitrogen mineralization rate measured by incubating soils for 30 days and extracting with 2M KCl
microgramsPerGramSoilPerDay
real
"NA"
NA corresponds to not measured
Frozen DIN N-mg/m2
Soil dissolved inorganic nitrogen pool scaled to segment height
milligramsPerSquareMeter
real
Frozen N g/m2
Soil total nitrogen pool scaled segment height
gramsPerSquareMeter
real
Frozen C g/m2
Soil carbon pool scaled to segment height
gramsPerSquareMeter
real
@article{ludwig_2018,
title = {Permafrost carbon and nitrogen, Yukon-Kuskokwim Delta, Alaska},
url = {http://ecosphere.esa.org/article/yyyy.zzzzzzz},
doi = {10.xxxx/yyyy.zzzzzz},
journal = {EcoSphere},
author = {Ludwig, Sarah},
year = {2018}
}
@article{jones_2001,
title = {Managing scientific metadata},
volume = {5},
issn = {10897801},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=957896},
doi = {10.1109/4236.957896},
number = {5},
journal = {IEEE Internet Computing},
author = {Jones, Matthew B. and Berkley, Chad and Bojilova, Jivka and Schildhauer, Mark},
year = {2001},
pages = {59--68}
}
@article{fegraus_2005,
title = {Maximizing the {Value} of {Ecological} {Data} with {Structured} {Metadata}: {An} {Introduction} to {Ecological} {Metadata} {Language} ({EML}) and {Principles} for {Metadata} {Creation}},
journal = {Bulletin of the Ecological Society of America},
author = {Fegraus, Eric H. and Andelman, Sandy and Jones, Matthew B. and Schildhauer, Mark},
year = {2005},
pages = {158--168}
}
Title for a paper that used this dataset.
Mark
Jarkady
2017
EcoSphere
https://doi.org/10.1002/ecs2.2166
@article{hampton_2017,
title = {Skills and {Knowledge} for {Data}-{Intensive} {Environmental} {Research}},
volume = {67},
copyright = {All rights reserved},
issn = {0006-3568, 1525-3244},
url = {https://academic.oup.com/bioscience/article-lookup/doi/10.1093/biosci/bix025},
doi = {10.1093/biosci/bix025},
language = {en},
number = {6},
urldate = {2018-02-15},
journal = {BioScience},
author = {Hampton, Stephanie E. and Jones, Matthew B. and Wasser, Leah A. and Schildhauer, Mark P. and Supp, Sarah R. and Brun, Julien and Hernandez, Rebecca R. and Boettiger, Carl and Collins, Scott L. and Gross, Louis J. and Fernández, Denny S. and Budden, Amber and White, Ethan P. and Teal, Tracy K. and Labou, Stephanie G. and Aukema, Juliann E.},
month = jun,
year = {2017},
pages = {546--557}
}
@article{brinckman_2018,
title = {Computing environments for reproducibility: {Capturing} the “{Whole} {Tale}”},
copyright = {All rights reserved},
issn = {0167739X},
shorttitle = {Computing environments for reproducibility},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0167739X17310695},
doi = {10.1016/j.future.2017.12.029},
language = {en},
urldate = {2018-04-16},
journal = {Future Generation Computer Systems},
author = {Brinckman, Adam and Chard, Kyle and Gaffney, Niall and Hategan, Mihael and Jones, Matthew B. and Kowalik, Kacper and Kulasekaran, Sivakumar and Ludäscher, Bertram and Mecum, Bryce D. and Nabrzyski, Jarek and Stodden, Victoria and Taylor, Ian J. and Turk, Matthew J. and Turner, Kandace},
month = feb,
year = {2018}
}
@article{collins_2018,
title = {Temporal heterogeneity increases with spatial heterogeneity in ecological communities},
volume = {99},
copyright = {All rights reserved},
issn = {00129658},
url = {http://doi.wiley.com/10.1002/ecy.2154},
doi = {10.1002/ecy.2154},
language = {en},
number = {4},
urldate = {2018-04-16},
journal = {Ecology},
author = {Collins, Scott L. and Avolio, Meghan L. and Gries, Corinna and Hallett, Lauren M. and Koerner, Sally E. and La Pierre, Kimberly J. and Rypel, Andrew L. and Sokol, Eric R. and Fey, Samuel B. and Flynn, Dan F. B. and Jones, Sydney K. and Ladwig, Laura M. and Ripplinger, Julie and Jones, Matt B.},
month = apr,
year = {2018},
pages = {858--865}
}