- AccessPolicy - Class in org.dataone.service.types.v1
-
A set of rules that specifies as a whole the allowable
permissions that a given user, group, or system has for accessing a
resource, including data, metadata, resource map, and service resources.
- AccessPolicy() - Constructor for class org.dataone.service.types.v1.AccessPolicy
-
- AccessPolicyEditor - Class in org.dataone.client
-
- AccessPolicyEditor(AccessPolicy) - Constructor for class org.dataone.client.AccessPolicyEditor
-
- AccessRule - Class in org.dataone.service.types.v1
-
A rule that is used to allow a :term:`subject` to
perform an action (such as read or write) on an object in DataONE.
- AccessRule() - Constructor for class org.dataone.service.types.v1.AccessRule
-
- AccessUtil - Class in org.dataone.service.types.v1.util
-
A helper class to simplify the use of AccessRules and AccessPolicies
consisting of static factory methods for creating these nested objects
(accessPolicy has accessRules has Permissions and Subjects, each subject has a value)
- AccessUtil() - Constructor for class org.dataone.service.types.v1.util.AccessUtil
-
- addAccess(Subject[], Permission) - Method in class org.dataone.client.AccessPolicyEditor
-
For the given Subjects, adds the permission specified unless the matching
or a 'greater' permission is already there.
- addAdditionalInfo(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Add a 'additionalInfo' element item.
- addAlgorithm(String) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Add a 'algorithm' element item.
- addAllow(AccessRule) - Method in class org.dataone.service.types.v1.AccessPolicy
-
Add a 'allow' element item.
- addAllowedNode(NodeReference) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Add a 'allowedNode' element item.
- addAllowedObjectFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Add a 'allowedObjectFormat' element item.
- addAndDownloadData(Identifier) - Method in class org.dataone.client.DataPackage
-
Puts an object with the given Identifier to the package's local, temporary
data store.
- addBlockedMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Add a 'blockedMemberNode' element item.
- addContactSubject(Subject) - Method in class org.dataone.service.types.v1.Node
-
Add a 'contactSubject' element item.
- addData(D1Object) - Method in class org.dataone.client.DataPackage
-
Puts a D1Object directly to the package's local, temporary data store without
downloading it from a node.
- addDateParamPair(String, Date) - Method in class org.dataone.service.util.D1Url
-
convenience method for adding date object to query parameters.
- addDescription(String) - Method in class org.dataone.service.types.v1_1.QueryField
-
Add a 'description' element item.
- addDistributionMetadata(String, String) - Method in class org.dataone.eml.EMLDocument
-
add a url and mime type to the document reference
- addEmail(String) - Method in class org.dataone.service.types.v1.Person
-
Add a 'email' element item.
- addEquivalentIdentity(Subject) - Method in class org.dataone.service.types.v1.Person
-
Add a 'equivalentIdentity' element item.
- addFilePart(String, File) - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
add a file part to the MMP
- addFilePart(String, InputStream) - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
add a file part to the MMP, using InputStream
This method writes the contents of the stream to
a temp file and sends it.
- addFilePart(String, String) - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
This method generates a temp files for sending, containing
the value parameter.
- addFilePart(String, File) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
add a file part to the MMP
- addFilePart(String, InputStream) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
add a file part to the MMP, using InputStream
This method writes the contents of the stream to
a temp file and sends it.
- addFilePart(String, Object) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
The DataONE object (serializable datatype) passed in
is serialized as the specified type to file.
- addFilePart(String, Object, Class) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
Deprecated.
- addFilePart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
This method generates a temp files for sending, containing
the value parameter.
- addGivenName(String) - Method in class org.dataone.service.types.v1.Person
-
Add a 'givenName' element item.
- addGroup(Group) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Add a 'group' element item.
- addHasMember(Subject) - Method in class org.dataone.service.types.v1.Group
-
Add a 'hasMember' element item.
- addIsMemberOf(Subject) - Method in class org.dataone.service.types.v1.Person
-
Add a 'isMemberOf' element item.
- addLogEntry(LogEntry) - Method in class org.dataone.service.types.v1.Log
-
Add a 'logEntry' element item.
- addMonitorInfo(MonitorInfo) - Method in class org.dataone.service.types.v1.MonitorList
-
Add a 'monitorInfo' element item.
- addNextPathElement(String) - Method in class org.dataone.service.util.D1Url
-
adds the next path element to the path portion of the URL, encoding unsafe characters.
- addNode(Node) - Method in class org.dataone.service.types.v1.NodeList
-
Add a 'node' element item.
- addNonEmptyParam(String) - Method in class org.dataone.service.util.D1Url
-
adds a single parameter to the query portion of the URL (not a key-value pair)
encoding unsafe characters.
- addNonEmptyParamPair(String, String) - Method in class org.dataone.service.util.D1Url
-
adds a key value pair to the query portion of the URL, placing '=' character between them,
and encoding unsafe characters.
- addNonEmptyParamPair(String, Integer) - Method in class org.dataone.service.util.D1Url
-
adds a key value pair to the query portion of the URL, placing '=' character between them,
and encoding unsafe characters.
- addObject(Identifier, Date, Identifier, Identifier, Boolean) - Method in class org.dataone.client.types.ObsoletesChain
-
- addObjectFormat(ObjectFormat) - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Add a 'objectFormat' element item.
- addObjectInfo(ObjectInfo) - Method in class org.dataone.service.types.v1.ObjectList
-
Add a 'objectInfo' element item.
- addObjectLocation(ObjectLocation) - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Add a 'objectLocation' element item.
- addParamPart(String, String) - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
add a param part to the MMP
- addParamPart(String, String) - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
add a param part to the MMP
- addPermission(Permission) - Method in class org.dataone.service.types.v1.AccessRule
-
Add a 'permission' element item.
- addPerson(Person) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Add a 'person' element item.
- addPreEncodedNonEmptyQueryParams(String) - Method in class org.dataone.service.util.D1Url
-
Method for adding query params that bypasses encoding.
- addPreferredMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Add a 'preferredMemberNode' element item.
- addPublicAccess(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
Given the original policy, return an AccessPolicy containing all of
the original rules, plus a new rule allowing public read permission,
if not already in place (otherwise returns the original).
- addQueryEngine(String) - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Add a 'queryEngine' element item.
- addQueryField(QueryField) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Add a 'queryField' element item.
- addReplica(Replica) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Add a 'replica' element item.
- addRestriction(ServiceMethodRestriction) - Method in class org.dataone.service.types.v1.Service
-
Add a 'restriction' element item.
- addRightsHolder(Subject) - Method in class org.dataone.service.types.v1.Group
-
Add a 'rightsHolder' element item.
- addService(Service) - Method in class org.dataone.service.types.v1.Services
-
Add a 'service' element item.
- addSubject(Subject) - Method in class org.dataone.service.types.v1.AccessRule
-
Add a 'subject' element item.
- addSubject(Subject) - Method in class org.dataone.service.types.v1.Node
-
Add a 'subject' element item.
- addSubject(Subject) - Method in class org.dataone.service.types.v1.SubjectList
-
Add a 'subject' element item.
- addTraceDetail(String, String) - Method in exception org.dataone.service.exceptions.BaseException
-
Add new detailed trace information, storing it the value under a known key.
- addVersion(String) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Add a 'version' element item.
- archive(Identifier) - Method in class org.dataone.client.CNode
-
- archive(Session, Identifier) - Method in class org.dataone.client.CNode
-
- archive(Session, D1Object) - Static method in class org.dataone.client.D1Client
-
Perform an archive on an object in DataONE with the given D1Object on the
authoritativeMemberNode contained in its systemMetadata.
- archive(Identifier) - Method in class org.dataone.client.D1Node
-
- archive(Session, Identifier) - Method in class org.dataone.client.D1Node
-
sets the archived flag to true on an MN or CN
- archive(Identifier) - Method in class org.dataone.client.MNode
-
- archive(Session, Identifier) - Method in class org.dataone.client.MNode
-
- archive(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
-
- archive(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- archive(Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
- archive(Session, Identifier) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
Deprecated.
- areChecksumsEqual(Checksum, Checksum) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
-
Returns true if and only if checksum1 and checksum2 are equal:
Values are equal, algorithms are equal.
- assembleUrl() - Method in class org.dataone.service.util.D1Url
-
- augmentConfiguration(String) - Static method in class org.dataone.configuration.Settings
-
Include additional properties in the global configuration.
- AuthenticationTimeout - Exception in org.dataone.service.exceptions
-
The DataONE AuthenticationTimeout exception, raised when authentication
operations exceed pre-established limits.
- AuthenticationTimeout(String, String) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
-
- AuthenticationTimeout(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
-
- AuthenticationTimeout(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
-
- AuthenticationTimeout(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.AuthenticationTimeout
-
- authorizedClientSubjects(Session) - Static method in class org.dataone.service.types.v1.util.AuthUtils
-
Derived from Metacat implementation
Creates a set of subjects represented in the session object, parsing
both the subject of the session and the subjectInfo.
- AuthUtils - Class in org.dataone.service.types.v1.util
-
- AuthUtils() - Constructor for class org.dataone.service.types.v1.util.AuthUtils
-
- CertificateManager - Class in org.dataone.client.auth
-
Import and manage certificates to be used for authentication against DataONE
service providers.
- CertificateManager() - Constructor for class org.dataone.client.auth.CertificateManager
-
CertificateManager is normally a singleton, but custom instances can be created if needed.
- checkDataIntegrity() - Method in class org.dataone.client.D1Object
-
Compares the data to the values in the size and checksum SystemMetadata fields
and returns true if they match.
- checkLength(List<String>) - Static method in class org.dataone.client.D1Object
-
Check that the all strings in the array have > 0 length.
- checkNotNull(List<Object>) - Static method in class org.dataone.client.D1Object
-
Check if any in a list of objects are null references.
- Checksum - Class in org.dataone.service.types.v1
-
Represents the value of a computed :term:`checksum`
expressed as a hexadecimal formatted version of the message digest.
- Checksum() - Constructor for class org.dataone.service.types.v1.Checksum
-
- checksum(InputStream, String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
-
return a Checksum based on the input of the stream
A useful technique when creating systemMetadata is to wrap the the
inputStream in an org.apache.commons.io.input.CountingInputStream,
to get the length of the content from the stream (after calling this method).
- checksum(byte[], String) - Static method in class org.dataone.service.types.v1.util.ChecksumUtil
-
produce a checksum for the given byte array
- ChecksumAlgorithmList - Class in org.dataone.service.types.v1
-
Represents a list of :term:`checksum`
algorithms.
- ChecksumAlgorithmList() - Constructor for class org.dataone.service.types.v1.ChecksumAlgorithmList
-
- ChecksumUtil - Class in org.dataone.service.types.v1.util
-
- ChecksumUtil() - Constructor for class org.dataone.service.types.v1.util.ChecksumUtil
-
- cleanupTempFiles() - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
calling this method attempts to delete the client-side
temp files from the system.
- cleanupTempFiles() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
calling this method attempts to delete the client-side
temp files from the system.
- clearAccessPolicy() - Method in class org.dataone.client.AccessPolicyEditor
-
- clearAddedHeaders() - Method in class org.dataone.client.RestClient
-
clears the map of added headers
- clearAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Remove all 'additionalInfo' element items.
- clearAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Remove all 'algorithm' element items.
- clearAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Remove all 'allowedNode' element items.
- clearAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Remove all 'allowedObjectFormat' element items.
- clearAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
-
Remove all 'allow' element items.
- clearBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Remove all 'blockedMemberNode' element items.
- clearContactSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Remove all 'contactSubject' element items.
- clearDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
-
Remove all 'description' element items.
- clearEmailList() - Method in class org.dataone.service.types.v1.Person
-
Remove all 'email' element items.
- clearEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
-
Remove all 'equivalentIdentity' element items.
- clearGivenNameList() - Method in class org.dataone.service.types.v1.Person
-
Remove all 'givenName' element items.
- clearGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Remove all 'group' element items.
- clearHasMemberList() - Method in class org.dataone.service.types.v1.Group
-
Remove all 'hasMember' element items.
- clearIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
-
Remove all 'isMemberOf' element items.
- clearLogEntryList() - Method in class org.dataone.service.types.v1.Log
-
Remove all 'logEntry' element items.
- clearMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
-
Remove all 'monitorInfo' element items.
- clearNodeList() - Method in class org.dataone.service.types.v1.NodeList
-
Remove all 'node' element items.
- clearObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Remove all 'objectFormat' element items.
- clearObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
-
Remove all 'objectInfo' element items.
- clearObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Remove all 'objectLocation' element items.
- clearPermissionList() - Method in class org.dataone.service.types.v1.AccessRule
-
Remove all 'permission' element items.
- clearPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Remove all 'person' element items.
- clearPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Remove all 'preferredMemberNode' element items.
- clearQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Remove all 'queryEngine' element items.
- clearQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Remove all 'queryField' element items.
- clearReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Remove all 'replica' element items.
- clearRestrictionList() - Method in class org.dataone.service.types.v1.Service
-
Remove all 'restriction' element items.
- clearRightsHolderList() - Method in class org.dataone.service.types.v1.Group
-
Remove all 'rightsHolder' element items.
- clearServiceList() - Method in class org.dataone.service.types.v1.Services
-
Remove all 'service' element items.
- clearSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
-
Remove all 'subject' element items.
- clearSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Remove all 'subject' element items.
- clearSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
-
Remove all 'subject' element items.
- clearVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Remove all 'version' element items.
- ClientIdentityManager - Class in org.dataone.client.auth
-
A client specific class to wrap certain CertificateManager methods, provide
some introspection on the current client identity, as well as methods to
manipulate identities.
- ClientIdentityManager() - Constructor for class org.dataone.client.auth.ClientIdentityManager
-
- clone() - Method in class org.dataone.client.AccessPolicyEditor
-
- cloneAccessPolicy(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
- cloneAccessRule(AccessRule) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
- cloneChecksum(Checksum) - Static method in class org.dataone.client.D1TypeBuilder
-
- cloneFormatIdentifier(ObjectFormatIdentifier) - Static method in class org.dataone.client.D1TypeBuilder
-
- cloneIdentifier(Identifier) - Static method in class org.dataone.client.D1TypeBuilder
-
- cloneNodeReference(NodeReference) - Static method in class org.dataone.client.D1TypeBuilder
-
- cloneSubject(Subject) - Static method in class org.dataone.client.D1TypeBuilder
-
- cloneSystemMetadata(SystemMetadata) - Static method in class org.dataone.client.D1TypeBuilder
-
Returns a clone of the given systemMetadata.
- closeIdleConnections() - Method in class org.dataone.client.D1RestClient
-
Calls closeIdleConnections on the underlying connection manager.
- CNAuthorization - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier2 Authorization interface.
- CNCore - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier1 Core interface.
- CNIdentity - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier2 Identity interface.
- CNode - Class in org.dataone.client
-
CNode represents a DataONE Coordinating Node, and allows calling classes to
execute CN services.
- CNode(String) - Constructor for class org.dataone.client.CNode
-
Construct a Coordinating Node, passing in the base url for node services.
- CNode(String, Session) - Constructor for class org.dataone.client.CNode
-
Construct a Coordinating Node, passing in the base url for node services,
and the Session to use for connections to that node.
- CNRead - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier1 Read interface.
- CNRegister - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier2 Registration interface.
- CNReplication - Interface in org.dataone.service.cn.v1
-
The DataONE CoordinatingNode Tier4 Replication interface.
- compare(Object, Object) - Method in class org.dataone.service.types.v1.comparators.GroupNameComparator
-
Compares order based on the String groupName of two Group objects.
- compare(Object, Object) - Method in class org.dataone.service.types.v1.comparators.PersonFamilyNameComparator
-
Compares order based on the String familyNames of two Person object.
- compare(Object, Object) - Method in class org.dataone.service.types.v1.comparators.SysMetaModificationDateComparator
-
Compares the order based on the modified date of the two SystemMetadata objects.
- compare(Object, Object) - Method in class org.dataone.service.types.v1.comparators.SysMetaUploadDateComparator
-
Compares the order based on the uploaded date of the two SystemMetadata objects.
- compareD1ServiceType(Map<String, Object>, Boolean) - Static method in class org.dataone.service.types.TypeCompareUtil
-
This method will compare any number of dataone service-type objects of
the same type to each other and return a report of every field where
there is a difference.
- comparePermissions(Permission, Collection<Permission>) - Static method in class org.dataone.service.types.v1.util.AuthUtils
-
a comparison algorithm for hierarchical permissions (WRITE implies READ, and CHANGE
implies WRITE and READ).
- compareSystemMetadata(SystemMetadata, SystemMetadata) - Static method in class org.dataone.service.types.TypeCompareUtil
-
Reports the properties of a systemMetadata object, one per line in xpath
fashion.
- compareTo(Object) - Method in class org.dataone.service.types.v1.Identifier
-
Compares order based on the String value of two objects of the same type.
- compareTo(Object) - Method in class org.dataone.service.types.v1.NodeReference
-
Compares order based on the String value of two objects of the same type.
- compareTo(Object) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
-
Compares order based on the String value of two objects of the same type.
- compareTo(Object) - Method in class org.dataone.service.types.v1.Subject
-
Compares order based on the String value of two objects of the same type.
- confirmMapIdentity(Subject) - Method in class org.dataone.client.CNode
-
- confirmMapIdentity(Session, Subject) - Method in class org.dataone.client.CNode
-
- confirmMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- confirmMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- Constants - Class in org.dataone.service.util
-
- Constants() - Constructor for class org.dataone.service.util.Constants
-
- contains(Identifier) - Method in class org.dataone.client.DataPackage
-
Determine if an object with the given Identifier is already present in
the local data store.
- convert(String) - Static method in enum org.dataone.service.types.v1.Event
-
- convert(String) - Static method in enum org.dataone.service.types.v1.NodeState
-
- convert(String) - Static method in enum org.dataone.service.types.v1.NodeType
-
- convert(String) - Static method in enum org.dataone.service.types.v1.Permission
-
- convert(String) - Static method in enum org.dataone.service.types.v1.ReplicationStatus
-
- copyDataPackages(CNode, MNode, List<Identifier>) - Method in class org.dataone.client.examples.ExampleDataPackageUpload
-
Copy oreIdentifers from sourceCn to targetMN.
- create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.CNode
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.CNode
-
- create(Session, D1Object) - Static method in class org.dataone.client.D1Client
-
Attempts to create the given D1Object on the originMemberNode contained
in its SystemMetadata.
- create(Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.MNode
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in class org.dataone.client.MNode
-
- create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- create(Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
- create(Session, Identifier, InputStream, SystemMetadata) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
Deprecated.
- createAccessRule(Subject[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
creates an AccessRule containing the items specified in the parameters.
- createAccessRule(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
creates an AccessRule containing the items specified in the parameters.
- createGroup(Group) - Method in class org.dataone.client.CNode
-
- createGroup(Session, Group) - Method in class org.dataone.client.CNode
-
- createGroup(Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- createGroup(Session, Group) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- createReadWriteChangePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
Dead-simple convenience method for creating a standard permission set
of Read and Write and ChangePermission
- createReadWriteChangePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
Dead-simple convenience method for creating a standard permission set
of Read and Write and ChangePermission
- createReadWritePermissionList() - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
Dead-simple convenience method for creating a standard permission set
of Read and Write.
- createReadWritePermissions() - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
Dead-simple convenience method for creating a standard permission set
of Read and Write.
- createResourceMap(Identifier, Map<Identifier, List<Identifier>>) - Method in class org.dataone.ore.ResourceMapFactory
-
creates a ResourceMap from the DataPackage representation.
- createSingleRuleAccessPolicy(String[], Permission[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
creates an AccessPolicy with a single AccessRule, and the AccessRule composed
of Subjects and Permissions specified in the parameters.
- createSubjectList(String[]) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
creates a java-List of Subject objects from the given String array.
- generateIdentifier(String, String) - Method in class org.dataone.client.CNode
-
- generateIdentifier(Session, String, String) - Method in class org.dataone.client.CNode
-
- generateIdentifier(String, String) - Method in class org.dataone.client.D1Node
-
- generateIdentifier(Session, String, String) - Method in class org.dataone.client.D1Node
-
- generateIdentifier(String, String) - Method in class org.dataone.client.MNode
-
- generateIdentifier(Session, String, String) - Method in class org.dataone.client.MNode
-
- generateIdentifier(String, String) - Method in interface org.dataone.service.cn.v1.CNCore
-
- generateIdentifier(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- generateIdentifier(String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
- generateIdentifier(Session, String, String) - Method in interface org.dataone.service.mn.tier3.v1.MNStorage
-
Deprecated.
- get(Identifier) - Method in class org.dataone.client.CNode
-
- get(Session, Identifier) - Method in class org.dataone.client.CNode
-
- get(Identifier) - Method in class org.dataone.client.D1Node
-
Get the resource with the specified pid.
- get(Session, Identifier) - Method in class org.dataone.client.D1Node
-
Get the resource with the specified pid.
- get(Identifier) - Method in class org.dataone.client.DataPackage
-
Get the D1Object associated with a given Identifier from the local data store.
- get(Identifier) - Method in class org.dataone.client.MNode
-
- get(Session, Identifier) - Method in class org.dataone.client.MNode
-
- get(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
InputStream is the Java native version of D1's OctetStream
- get(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
Deprecated.
- get(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
InputStream is the Java native version of D1's OctetStream
- get(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
Deprecated.
- GET - Static variable in class org.dataone.service.util.Constants
-
HTTP Verb GET
- getAccessPolicy() - Method in class org.dataone.client.AccessPolicyEditor
-
gets the AccessPolicy being manipulated
- getAccessPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'accessPolicy' element value.
- getAccessPolicyEditor() - Method in class org.dataone.client.D1Object
-
Provides an object to manipulate this D1Object's accessPolicy
- getAddedHeaders() - Method in class org.dataone.client.D1RestClient
-
- getAddedHeaders() - Method in class org.dataone.client.RestClient
-
returns a Map of the headers added via setHeader(..)
- getAdditionalInfo(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get 'additionalInfo' element item by position.
- getAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the list of 'additionalInfo' element items.
- getAlgorithm() - Method in class org.dataone.service.types.v1.Checksum
-
Get the 'algorithm' attribute value.
- getAlgorithm(int) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Get 'algorithm' element item by position.
- getAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Get the list of 'algorithm' element items.
- getAllow(int) - Method in class org.dataone.service.types.v1.AccessPolicy
-
Get 'allow' element item by position.
- getAllowedNode(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get 'allowedNode' element item by position.
- getAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the list of 'allowedNode' element items.
- getAllowedObjectFormat(int) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get 'allowedObjectFormat' element item by position.
- getAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the list of 'allowedObjectFormat' element items.
- getAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
-
Get the list of 'allow' element items.
- getArchived() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'archived' element value.
- getAssembledQueryString() - Method in class org.dataone.service.util.D1Url
-
- getAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getAttributeNames() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getAuthoritativeMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'authoritativeMemberNode' element value.
- getAuthType() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getAvailable() - Method in class org.dataone.service.types.v1.Service
-
Get the 'available' attribute value.
- getBaseURL() - Method in class org.dataone.service.types.v1.Node
-
Get the 'baseURL' element value.
- getBaseURL() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the 'baseURL' element value.
- getBaseUrl() - Method in class org.dataone.service.util.D1Url
-
- getBlockedMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get 'blockedMemberNode' element item by position.
- getBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the list of 'blockedMemberNode' element items.
- getByPosition(int) - Method in class org.dataone.client.types.ObsoletesChain
-
- getCACert(String) - Method in class org.dataone.client.auth.CertificateManager
-
Find the supplemental CA certificate to be used to validate user (peer) <
- getCapabilities() - Method in class org.dataone.client.MNode
-
- getCapabilities() - Method in interface org.dataone.service.mn.tier1.v1.MNCore
-
- getCertificate(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager
-
Get the client certificate from the request object
- getCertificateExpiration() - Static method in class org.dataone.client.auth.ClientIdentityManager
-
- getCertificateLocation() - Method in class org.dataone.client.auth.CertificateManager
-
- getCharacterEncoding() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getChecksum(Identifier) - Method in class org.dataone.client.CNode
-
- getChecksum(Session, Identifier) - Method in class org.dataone.client.CNode
-
- getChecksum(Identifier, String) - Method in class org.dataone.client.D1Node
-
- getChecksum(Session, Identifier, String) - Method in class org.dataone.client.D1Node
-
This method can handle both the MN and CN method, although the CN overriding method
will need to recast the InvalidRequest exception and use 'null' for the checksumAlgorithm param
- getChecksum(Identifier, String) - Method in class org.dataone.client.MNode
-
- getChecksum(Session, Identifier, String) - Method in class org.dataone.client.MNode
-
- getChecksum(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
- getChecksum(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
Deprecated.
- getChecksum(Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
- getChecksum(Session, Identifier, String) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
Deprecated.
- getChecksum() - Method in class org.dataone.service.types.v1.ObjectInfo
-
Get the 'checksum' element value.
- getChecksum() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'checksum' element value.
- getCN(Session) - Static method in class org.dataone.client.D1Client
-
Get the client instance of the Coordinating Node object for calling Coordinating Node services.
- getCN() - Static method in class org.dataone.client.D1Client
-
Get the client instance of the Coordinating Node object for calling Coordinating Node services.
- getCnAdministrativeList(List<Node>, String, String) - Static method in class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
-
Returns an array of subjects listed as CN's in the nodelist or in a properties file.
- getCode() - Method in exception org.dataone.service.exceptions.BaseException
-
- getConfiguration() - Static method in class org.dataone.configuration.Settings
-
Get a Configuration interface that combines all resources
found under all of the org.dataone.configuration/config.xml
files from all application packages.
- getContactSubject(int) - Method in class org.dataone.service.types.v1.Node
-
Get 'contactSubject' element item by position.
- getContactSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Get the list of 'contactSubject' element items.
- getContent_Length() - Method in class org.dataone.service.types.v1.DescribeResponse
-
get the Size of the object in bytes, the value of SystemMetadata.size from SystemMetadata.
- getContentLength() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getContentType() - Method in class org.dataone.client.InputStreamDataSource
-
get the content type of this stream
- getContentType() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getContextPath() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getCookies() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getCount() - Method in class org.dataone.service.types.v1.MonitorInfo
-
Get the 'count' element value.
- getCount() - Method in class org.dataone.service.types.v1.Slice
-
Get the 'count' attribute value.
- getCurrentIdentity() - Static method in class org.dataone.client.auth.ClientIdentityManager
-
a simple encapsulation to return the client's (current) identity
from the CertificateManager as a dataone Subject
- getCurrentSession() - Static method in class org.dataone.client.auth.ClientIdentityManager
-
a simple encapsulation to return a session object built from the
CertificateManager
- getD1SubtypesListing(Object) - Static method in class org.dataone.service.types.TypeCompareUtil
-
A recursive method that returns a map of key value pairs that correspond
to the property paths (keys) and values of the object passed in.
- getD1SubtypesListing(String, Object, boolean) - Static method in class org.dataone.service.types.TypeCompareUtil
-
A recursive method that returns a map of key value pairs that correspond
to the property paths (keys) and values of the object passed in.
- getD1SubtypesListing(String, Object, boolean, boolean) - Static method in class org.dataone.service.types.TypeCompareUtil
-
- getData(Identifier) - Method in class org.dataone.client.cache.LocalCache
-
Retrieve an array of bytes from the cache, throwing NotCached if the object
with the Identifier key is not in the cache.
- getData() - Method in class org.dataone.client.D1Object
-
Deprecated.
- getDataONE_Checksum() - Method in class org.dataone.service.types.v1.DescribeResponse
-
get The algorithm (SystemMetadata.algorithm) and Checksum (SystemMetadata.checksum) of the object being examined, drawn from the SystemMetadata.
- getDataONE_ObjectFormatIdentifier() - Method in class org.dataone.service.types.v1.DescribeResponse
-
get The value of the SystemMetadata.objectFormatIdentifier entry available in the SystemMetadata.
- getDataSource() - Method in class org.dataone.client.D1Object
-
get the DataSource representing the data
- getDate() - Method in class org.dataone.service.types.v1.MonitorInfo
-
Get the 'date' element value.
- getDateHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getDateLogged() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'dateLogged' element value.
- getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.ObjectInfo
-
Get the 'dateSysMetadataModified' element value.
- getDateSysMetadataModified() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'dateSysMetadataModified' element value.
- getDateUploaded() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'dateUploaded' element value.
- getDefaultSoTimeout() - Method in class org.dataone.client.D1Node
-
- getDescription() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
Returns a concise description of the existing file parts, as comma-separated
key-value pairs.
- getDescription() - Method in exception org.dataone.service.exceptions.BaseException
-
- getDescription() - Method in class org.dataone.service.types.v1.Node
-
Get the 'description' element value.
- getDescription(int) - Method in class org.dataone.service.types.v1_1.QueryField
-
Get 'description' element item by position.
- getDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
-
Get the list of 'description' element items.
- getDetail_code() - Method in exception org.dataone.service.exceptions.BaseException
-
- getDocumentedBy(Identifier) - Method in class org.dataone.client.DataPackage
-
Convenience function for working with the metadata map.
- getEmail(int) - Method in class org.dataone.service.types.v1.Person
-
Get 'email' element item by position.
- getEmailList() - Method in class org.dataone.service.types.v1.Person
-
Get the list of 'email' element items.
- getEntryId() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'entryId' element value.
- getEquivalentIdentity(int) - Method in class org.dataone.service.types.v1.Person
-
Get 'equivalentIdentity' element item by position.
- getEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
-
Get the list of 'equivalentIdentity' element items.
- getEvent() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'event' element value.
- getExtension(String) - Method in class org.dataone.client.formats.ObjectFormatInfo
-
Look up the extension for an ObjectFormat based on the format identifier
for that ObjectFormat.
- getExtension(ObjectFormat) - Method in class org.dataone.client.formats.ObjectFormatInfo
-
Look up the extension for an ObjectFormat.
- getExtensionValue(X509Certificate, String) - Method in class org.dataone.client.auth.CertificateManager
-
Retrieves the extension value given by the OID
- getFamilyName() - Method in class org.dataone.service.types.v1.Person
-
Get the 'familyName' element value.
- getFmtId() - Method in class org.dataone.client.D1Object
-
Deprecated.
- getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.CNode
-
Return the ObjectFormat for the given ObjectFormatIdentifier, obtained
either from a client-cached ObjectFormatList from the ObjectFormatCache,
or from a call to the CN.
- getFormat(String) - Method in class org.dataone.client.ObjectFormatCache
-
Deprecated.
- getFormat(ObjectFormatIdentifier) - Method in class org.dataone.client.ObjectFormatCache
-
Lookup and return the format specified by the Identifier.
- getFormat(ObjectFormatIdentifier) - Method in interface org.dataone.service.cn.v1.CNCore
-
- getFormat(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.util.ObjectFormatServiceImpl
-
Get the object format based on the given identifier.
- getFormatId() - Method in class org.dataone.client.D1Object
-
- getFormatId() - Method in class org.dataone.service.types.v1.ObjectFormat
-
Get the 'formatId' element value.
- getFormatId() - Method in class org.dataone.service.types.v1.ObjectInfo
-
Get the 'formatId' element value.
- getFormatId() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'formatId' element value.
- getFormatName() - Method in class org.dataone.service.types.v1.ObjectFormat
-
Get the 'formatName' element value.
- getFormatType() - Method in class org.dataone.service.types.v1.ObjectFormat
-
Get the 'formatType' element value.
- getGivenName(int) - Method in class org.dataone.service.types.v1.Person
-
Get 'givenName' element item by position.
- getGivenNameList() - Method in class org.dataone.service.types.v1.Person
-
Get the list of 'givenName' element items.
- getGroup(int) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get 'group' element item by position.
- getGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get the list of 'group' element items.
- getGroupName() - Method in class org.dataone.service.types.v1.Group
-
Get the 'groupName' element value.
- getHasMember(int) - Method in class org.dataone.service.types.v1.Group
-
Get 'hasMember' element item by position.
- getHasMemberList() - Method in class org.dataone.service.types.v1.Group
-
Get the list of 'hasMember' element items.
- getHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getHeaderNames() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getHeaders(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getHits() - Method in class org.dataone.client.cache.LocalCache
-
Returns the cache hits, the number of times that objects are requested
and found in the cache since the last time that counters were reset.
- getHour() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'hour' attribute value.
- getHttpClient() - Method in class org.dataone.client.D1RestClient
-
Gets the AbstractHttpClient instance used to make the connection
- getHttpClient() - Method in class org.dataone.client.RestClient
-
Gets the DefaultHttpClient instance used to make the connection
- getHttpClient() - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
- getIdentifier() - Method in class org.dataone.client.D1Object
-
- getIdentifier() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'identifier' element value.
- getIdentifier() - Method in class org.dataone.service.types.v1.Node
-
Get the 'identifier' element value.
- getIdentifier() - Method in class org.dataone.service.types.v1.ObjectInfo
-
Get the 'identifier' element value.
- getIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Get the 'identifier' element value.
- getIdentifier() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'identifier' element value.
- getInputStream() - Method in class org.dataone.client.InputStreamDataSource
-
get the InputStream from this data source
- getInputStream() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getInstance() - Static method in class org.dataone.client.auth.CertificateManager
-
Return the singleton instance of this CertificateManager, creating it if needed.
- getInstance() - Static method in class org.dataone.client.ObjectFormatCache
-
Create the object format cache instance if it hasn't already been created.
- getInstance() - Static method in class org.dataone.eml.DataoneEMLParser
-
singleton accessor
- getInstance() - Static method in class org.dataone.ore.ResourceMapFactory
-
Returns the singleton instance for this class.
- getInstance() - Static method in class org.dataone.service.types.v1.util.ObjectFormatServiceImpl
-
Get the instance of the ObjectFormatServiceImpl that has been instantiated,
or instantiate one if it has not been already.
- getIntHeader(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getIpAddress() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'ipAddress' element value.
- getIsMemberOf(int) - Method in class org.dataone.service.types.v1.Person
-
Get 'isMemberOf' element item by position.
- getIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
-
Get the list of 'isMemberOf' element items.
- getLast_Modified() - Method in class org.dataone.service.types.v1.DescribeResponse
-
get DateTime value that indicates when the system metadata associated with the object was last modified, i.e.
- getLastCompleteHarvest() - Method in class org.dataone.service.types.v1.Synchronization
-
Get the 'lastCompleteHarvest' element value.
- getLastHarvested() - Method in class org.dataone.service.types.v1.Synchronization
-
Get the 'lastHarvested' element value.
- getLastRefreshDate() - Method in class org.dataone.client.ObjectFormatCache
-
Returns the date of the last refresh from the CN.
- getLastSuccess() - Method in class org.dataone.service.types.v1.Ping
-
Get the 'lastSuccess' attribute value.
- getLastTempfile() - Method in class org.dataone.mimemultipart.SimpleMultipartEntity
-
- getLatestRequestUrl() - Method in class org.dataone.client.D1Node
-
Useful for debugging to see what the last call was
- getLatestRequestUrl() - Method in class org.dataone.client.D1RestClient
-
Gets the string representation of the latest http call made by the
underlying RestClient
- getLatestRequestUrl() - Method in class org.dataone.client.RestClient
-
- getLatestVersion() - Method in class org.dataone.client.types.ObsoletesChain
-
- getLocalAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getLocale() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getLocales() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getLocalName() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getLocalPort() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getLogEntry(int) - Method in class org.dataone.service.types.v1.Log
-
Get 'logEntry' element item by position.
- getLogEntryList() - Method in class org.dataone.service.types.v1.Log
-
Get the list of 'logEntry' element items.
- getLogRecords() - Method in class org.dataone.client.CNode
-
- getLogRecords(Session) - Method in class org.dataone.client.CNode
-
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.CNode
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.CNode
-
- getLogRecords() - Method in class org.dataone.client.D1Node
-
- getLogRecords(Session) - Method in class org.dataone.client.D1Node
-
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.D1Node
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.D1Node
-
- getLogRecords() - Method in class org.dataone.client.MNode
-
- getLogRecords(Session) - Method in class org.dataone.client.MNode
-
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.MNode
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in class org.dataone.client.MNode
-
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- getLogRecords(Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
-
- getLogRecords(Session, Date, Date, Event, String, Integer, Integer) - Method in interface org.dataone.service.mn.tier1.v1.MNCore
-
Deprecated.
- getMap() - Method in class org.dataone.client.DataPackage
-
Build and return a fresh ORE ResourceMap from the metadata map.
- getMaxObjectSize() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the 'maxObjectSize' element value.
- getMday() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'mday' attribute value.
- getMetadataMap() - Method in class org.dataone.client.DataPackage
-
- getMethod() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getMethodName() - Method in class org.dataone.service.types.v1.ServiceMethodRestriction
-
Get the 'methodName' attribute value.
- getMimeType(String) - Method in class org.dataone.client.formats.ObjectFormatInfo
-
Look up the mime type for an ObjectFormat based on the format identifier
for that ObjectFormat.
- getMimeType(ObjectFormat) - Method in class org.dataone.client.formats.ObjectFormatInfo
-
Look up the mime type for an ObjectFormat.
- getMin() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'min' attribute value.
- getMinimalRefreshInterval() - Method in class org.dataone.client.ObjectFormatCache
-
Returns the minimal refresh interval (seconds)
- getMisses() - Method in class org.dataone.client.cache.LocalCache
-
Returns the cache misses, the number of times that objects are requested
but are not found in the cache since the last time that counters were reset.
- getMN(String) - Static method in class org.dataone.client.D1Client
-
Construct and return a Member Node using the base service URL for the node.
- getMN(NodeReference) - Static method in class org.dataone.client.D1Client
-
Construct and return a Member Node using the nodeReference
for the member node.
- getMon() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'mon' attribute value.
- getMonitorInfo(int) - Method in class org.dataone.service.types.v1.MonitorList
-
Get 'monitorInfo' element item by position.
- getMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
-
Get the list of 'monitorInfo' element items.
- getMultipartFiles() - Method in class org.dataone.mimemultipart.MultipartRequest
-
Return the multipart files as Map of field name to MultipartFile instance.
- getMultipartParameters() - Method in class org.dataone.mimemultipart.MultipartRequest
-
Return the multipart parameters as Map of field name to form field String value.
- getMultivalued() - Method in class org.dataone.service.types.v1_1.QueryField
-
Get the 'multivalued' element value.
- getName() - Method in class org.dataone.client.InputStreamDataSource
-
get the name of the data source.
- getName() - Method in class org.dataone.service.types.v1.Node
-
Get the 'name' element value.
- getName() - Method in class org.dataone.service.types.v1.Service
-
Get the 'name' attribute value.
- getName() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the 'name' element value.
- getName() - Method in class org.dataone.service.types.v1_1.QueryField
-
Get the 'name' element value.
- getNode(int) - Method in class org.dataone.service.types.v1.NodeList
-
Get 'node' element item by position.
- getNodeBaseServiceUrl() - Method in class org.dataone.client.CNode
-
- getNodeBaseServiceUrl() - Method in class org.dataone.client.D1Node
-
Retrieve the service URL for this node.
- getNodeBaseServiceUrl() - Method in class org.dataone.client.MNode
-
- getNodeId() - Method in class org.dataone.client.D1Node
-
- getNodeId() - Method in exception org.dataone.service.exceptions.BaseException
-
Get the node Id string
- getNodeIdentifier() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'nodeIdentifier' element value.
- getNodeIdentifier() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the 'nodeIdentifier' element value.
- getNodeList() - Method in class org.dataone.service.types.v1.NodeList
-
Get the list of 'node' element items.
- getNodeReplicationPolicy() - Method in class org.dataone.service.types.v1.Node
-
Get the 'nodeReplicationPolicy' element value.
- getNumberReplicas() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the 'numberReplicas' attribute value.
- getObjectFormat(int) - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Get 'objectFormat' element item by position.
- getObjectFormatFile() - Method in class org.dataone.service.types.v1.util.ObjectFormatServiceImpl
-
Convenience method to retrieve the default format list as a stream
- getObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Get the list of 'objectFormat' element items.
- getObjectFormatMap() - Method in class org.dataone.service.types.v1.util.ObjectFormatServiceImpl
-
Return the hash containing the formatId and format mapping
- getObjectInfo(int) - Method in class org.dataone.service.types.v1.ObjectList
-
Get 'objectInfo' element item by position.
- getObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
-
Get the list of 'objectInfo' element items.
- getObjectLocation(int) - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Get 'objectLocation' element item by position.
- getObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Get the list of 'objectLocation' element items.
- getObsoletedBy() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'obsoletedBy' element value.
- getObsoletes() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'obsoletes' element value.
- getOREModel() - Method in class org.dataone.ore.ResourceMapFactory
-
this method optimizes retrieving and caching the ORE model, used for
reasoning model
- getOriginalVersion() - Method in class org.dataone.client.types.ObsoletesChain
-
- getOriginMemberNode() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'originMemberNode' element value.
- getOutputStream() - Method in class org.dataone.client.InputStreamDataSource
-
get an output stream for this data source.
- getPackageId() - Method in class org.dataone.client.DataPackage
-
- getParameter(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getParameterMap() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getParameterNames() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getParameterValues(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getPathInfo() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getPathTranslated() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getPendingMapIdentity(Subject) - Method in class org.dataone.client.CNode
-
- getPendingMapIdentity(Session, Subject) - Method in class org.dataone.client.CNode
-
- getPendingMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- getPendingMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- getPermission(int) - Method in class org.dataone.service.types.v1.AccessRule
-
Get 'permission' element item by position.
- getPermissionList() - Method in class org.dataone.service.types.v1.AccessRule
-
Get the list of 'permission' element items.
- getPermissionMap(AccessPolicy) - Static method in class org.dataone.service.types.v1.util.AccessUtil
-
- getPerson(int) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get 'person' element item by position.
- getPersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get the list of 'person' element items.
- getPid() - Method in exception org.dataone.service.exceptions.BaseException
-
- getPing() - Method in class org.dataone.service.types.v1.Node
-
Get the 'ping' element value.
- getPreference() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the 'preference' element value.
- getPreferredMemberNode(int) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get 'preferredMemberNode' element item by position.
- getPreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the list of 'preferredMemberNode' element items.
- getProtocol() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getPublishDate(Identifier) - Method in class org.dataone.client.types.ObsoletesChain
-
- getQueryEngine(int) - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Get 'queryEngine' element item by position.
- getQueryEngineDescription(String) - Method in class org.dataone.client.CNode
-
- getQueryEngineDescription(String) - Method in class org.dataone.client.D1Node
-
- getQueryEngineDescription(String) - Method in class org.dataone.client.MNode
-
- getQueryEngineDescription(String) - Method in interface org.dataone.service.cn.v1.CNRead
-
- getQueryEngineDescription(String) - Method in interface org.dataone.service.mn.v1.MNQuery
-
- getQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Get the list of 'queryEngine' element items.
- getQueryEngineVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the 'queryEngineVersion' element value.
- getQueryField(int) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get 'queryField' element item by position.
- getQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the list of 'queryField' element items.
- getQuerySchemaVersion() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the 'querySchemaVersion' element value.
- getQueryString() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getReader() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRealPath(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRemoteAddr() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRemoteHost() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRemotePort() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRemoteUser() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getReplica(Identifier) - Method in class org.dataone.client.MNode
-
- getReplica(Session, Identifier) - Method in class org.dataone.client.MNode
-
- getReplica(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
- getReplica(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
Deprecated.
- getReplica(int) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get 'replica' element item by position.
- getReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the list of 'replica' element items.
- getReplicaMemberNode() - Method in class org.dataone.service.types.v1.Replica
-
Get the 'replicaMemberNode' element value.
- getReplicationAllowed() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the 'replicationAllowed' attribute value.
- getReplicationPolicy() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'replicationPolicy' element value.
- getReplicationStatus() - Method in class org.dataone.service.types.v1.Replica
-
Get the 'replicationStatus' element value.
- getReplicaVerified() - Method in class org.dataone.service.types.v1.Replica
-
Get the 'replicaVerified' element value.
- getRequest() - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
Returns the request for use by any org.apache.http.client.HttpClient
- getRequestDispatcher(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRequestedSessionId() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRequestURI() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getRequestURL() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getResetConfiguration() - Static method in class org.dataone.configuration.Settings
-
- getResource() - Method in class org.dataone.service.util.D1Url
-
- getRestriction(int) - Method in class org.dataone.service.types.v1.Service
-
Get 'restriction' element item by position.
- getRestrictionList() - Method in class org.dataone.service.types.v1.Service
-
Get the list of 'restriction' element items.
- getRightsHolder(int) - Method in class org.dataone.service.types.v1.Group
-
Get 'rightsHolder' element item by position.
- getRightsHolder() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'rightsHolder' element value.
- getRightsHolderList() - Method in class org.dataone.service.types.v1.Group
-
Get the list of 'rightsHolder' element items.
- getSchedule() - Method in class org.dataone.service.types.v1.Synchronization
-
Get the 'schedule' element value.
- getScheme() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getSec() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'sec' attribute value.
- getSerialVersion() - Method in class org.dataone.service.types.v1.DescribeResponse
-
get the SerialVersion of the object SystemMetadata
- getSerialVersion() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'serialVersion' element value.
- getServerName() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getServerPort() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getService(int) - Method in class org.dataone.service.types.v1.Services
-
Get 'service' element item by position.
- getServiceList() - Method in class org.dataone.service.types.v1.Services
-
Get the list of 'service' element items.
- getServices() - Method in class org.dataone.service.types.v1.Node
-
Get the 'services' element value.
- getServletPath() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getSession(HttpServletRequest) - Method in class org.dataone.client.auth.CertificateManager
-
extracts the principal from the certificate passed in with the request
and creates the dataone Session object.
- getSession(HttpServletRequest, boolean) - Method in class org.dataone.client.auth.CertificateManager
-
extracts the principal from the certificate passed in with the request
and creates the dataone Session object.
- getSession(boolean) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getSession() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getSize() - Method in class org.dataone.service.types.v1.ObjectInfo
-
Get the 'size' element value.
- getSize() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'size' element value.
- getSpaceAllocated() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the 'spaceAllocated' element value.
- getSSLSocketFactory(String) - Method in class org.dataone.client.auth.CertificateManager
-
For use by clients making requests via SSL connection.
- getStart() - Method in class org.dataone.service.types.v1.Slice
-
Get the 'start' attribute value.
- getStartingPoint() - Method in class org.dataone.client.types.ObsoletesChain
-
- getState() - Method in class org.dataone.service.types.v1.Node
-
Get the 'state' attribute value.
- getSubject(int) - Method in class org.dataone.service.types.v1.AccessRule
-
Get 'subject' element item by position.
- getSubject() - Method in class org.dataone.service.types.v1.Group
-
Get the 'subject' element value.
- getSubject() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'subject' element value.
- getSubject(int) - Method in class org.dataone.service.types.v1.Node
-
Get 'subject' element item by position.
- getSubject() - Method in class org.dataone.service.types.v1.Person
-
Get the 'subject' element value.
- getSubject() - Method in class org.dataone.service.types.v1.Session
-
Get the 'subject' element value.
- getSubject(int) - Method in class org.dataone.service.types.v1.SubjectList
-
Get 'subject' element item by position.
- getSubjectDN(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager
-
Returns the RFC2253 string representation for the certificate's subject
This is the standard format used in DataONE.
- getSubjectInfo(X509Certificate) - Method in class org.dataone.client.auth.CertificateManager
-
Retrieve the SubjectInfo contained in the given certificate
- getSubjectInfo(Subject) - Method in class org.dataone.client.CNode
-
- getSubjectInfo(Session, Subject) - Method in class org.dataone.client.CNode
-
- getSubjectInfo(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- getSubjectInfo(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- getSubjectInfo() - Method in class org.dataone.service.types.v1.Session
-
Get the 'subjectInfo' element value.
- getSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
-
Get the list of 'subject' element items.
- getSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Get the list of 'subject' element items.
- getSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
-
Get the list of 'subject' element items.
- getSubmitter() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the 'submitter' element value.
- getSuccess() - Method in class org.dataone.service.types.v1.Ping
-
Get the 'success' attribute value.
- getSynchronization() - Method in class org.dataone.service.types.v1.Node
-
Get the 'synchronization' element value.
- getSystemMetadata(Identifier) - Method in class org.dataone.client.cache.LocalCache
-
Retrieve a SystemMetadata from the cache, throwing NotCached if the system metadata
for the Identifier key is not in the cache.
- getSystemMetadata(Identifier) - Method in class org.dataone.client.CNode
-
- getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.CNode
-
- getSystemMetadata(Identifier) - Method in class org.dataone.client.D1Node
-
Get the system metadata from a resource with the specified guid.
- getSystemMetadata(Identifier, boolean) - Method in class org.dataone.client.D1Node
-
Get the system metadata from a resource with the specified guid, potentially using the local
system metadata cache if specified to do so.
- getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.D1Node
-
Get the system metadata from a resource with the specified guid.
- getSystemMetadata(Session, Identifier, boolean) - Method in class org.dataone.client.D1Node
-
Get the system metadata from a resource with the specified guid, potentially using the local
system metadata cache if specified to do so.
- getSystemMetadata() - Method in class org.dataone.client.D1Object
-
- getSystemMetadata() - Method in class org.dataone.client.DataPackage
-
Get the SystemMetadata object associated with the data package.
- getSystemMetadata(Identifier) - Method in class org.dataone.client.MNode
-
- getSystemMetadata(Session, Identifier) - Method in class org.dataone.client.MNode
-
- getSystemMetadata(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
- getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
Deprecated.
- getSystemMetadata(Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
- getSystemMetadata(Session, Identifier) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
Deprecated.
- getTotal() - Method in class org.dataone.service.types.v1.Slice
-
Get the 'total' attribute value.
- getTraceDetail(String) - Method in exception org.dataone.service.exceptions.BaseException
-
Get the value of one of the trace detail parametersm retrieved by its
key value.
- getTraceKeySet() - Method in exception org.dataone.service.exceptions.BaseException
-
Return a Set representation of all of the keys for the trace values in
this exception.
- getType() - Method in class org.dataone.service.types.v1.Node
-
Get the 'type' attribute value.
- getType() - Method in class org.dataone.service.types.v1_1.QueryField
-
Get the 'type' element value.
- getUncharacterizedMembers() - Method in class org.dataone.client.DataPackage
-
Returns a list of package members that are not in the relationship map
(implying that these are not true members, as they will
not be included in the serialized ResourceMap).
- getUnresolvableMembers() - Method in class org.dataone.client.DataPackage
-
Returns the Identifiers in the relationship map that cannot
be found in the object map or resolved by the CN.
- getUrl() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the 'url' element value.
- getUrl() - Method in class org.dataone.service.util.D1Url
-
- getUserAgent() - Method in class org.dataone.service.types.v1.LogEntry
-
Get the 'userAgent' element value.
- getUserPrincipal() - Method in class org.dataone.mimemultipart.MultipartRequest
-
- getValue() - Method in class org.dataone.service.types.v1.Checksum
-
Get the extension value.
- getValue() - Method in class org.dataone.service.types.v1.Identifier
-
Get the 'Identifier' complexType value.
- getValue() - Method in class org.dataone.service.types.v1.NodeReference
-
Get the 'NodeReference' complexType value.
- getValue() - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
-
Get the 'ObjectFormatIdentifier' simpleType value.
- getValue() - Method in class org.dataone.service.types.v1.Subject
-
Get the 'Subject' complexType value.
- getVerified() - Method in class org.dataone.service.types.v1.Person
-
Get the 'verified' element value.
- getVersion(int) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get 'version' element item by position.
- getVersion() - Method in class org.dataone.service.types.v1.Service
-
Get the 'version' attribute value.
- getVersionAsOf(Date) - Method in class org.dataone.client.types.ObsoletesChain
-
- getVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the list of 'version' element items.
- getWday() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'wday' attribute value.
- getYear() - Method in class org.dataone.service.types.v1.Schedule
-
Get the 'year' attribute value.
- Group - Class in org.dataone.service.types.v1
-
Group represents metadata about a :term:`Subject` that
represents a collection of other Subjects.
- Group() - Constructor for class org.dataone.service.types.v1.Group
-
- GroupNameComparator - Class in org.dataone.service.types.v1.comparators
-
A comparator for comparing the Group objects base on the group name.
- GroupNameComparator() - Constructor for class org.dataone.service.types.v1.comparators.GroupNameComparator
-
- rc - Variable in class org.dataone.client.D1RestClient
-
- recastClientSideExceptionToServiceFailure(Exception) - Static method in class org.dataone.client.D1Node
-
A helper function to preserve the stackTrace when catching one error and throwing a new one.
- recastDataONEExceptionToServiceFailure(BaseException) - Static method in class org.dataone.client.D1Node
-
A helper function for recasting DataONE exceptions to ServiceFailures while
preserving the detail code and TraceDetails.
- refreshSystemMetadata(Integer) - Method in class org.dataone.client.D1Object
-
refresh the SystemMetadata of this object, first trying the CN, then the
authoritative MN.
- register(Node) - Method in class org.dataone.client.CNode
-
- register(Session, Node) - Method in class org.dataone.client.CNode
-
- register(Node) - Method in interface org.dataone.service.cn.v1.CNRegister
-
- register(Session, Node) - Method in interface org.dataone.service.cn.v1.CNRegister
-
Deprecated.
- registerAccount(Person) - Method in class org.dataone.client.CNode
-
- registerAccount(Session, Person) - Method in class org.dataone.client.CNode
-
- registerAccount(Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- registerAccount(Session, Person) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- registerCertificate(String, X509Certificate, PrivateKey) - Method in class org.dataone.client.auth.CertificateManager
-
Register certificates to be used by getSSLSocjetFactory(subject) for setting
up connections, using the subject as the lookup key
- registerSystemMetadata(Identifier, SystemMetadata) - Method in class org.dataone.client.CNode
-
- registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in class org.dataone.client.CNode
-
- registerSystemMetadata(Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
-
- registerSystemMetadata(Session, Identifier, SystemMetadata) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- reload() - Static method in class org.dataone.client.formats.ObjectFormatInfo
-
Cause the ObjectFormatInfo to reload its data, which enables a calling application
to programatically modify the underlying mapping data and then reload the
mappings in this class for use without restarting the application.
- remove(Identifier) - Method in class org.dataone.client.DataPackage
-
Deprecated.
renaming to removeData(Identifier id) for naming consistency
with addData, addAndDownloadData
- removeAccess(Subject[]) - Method in class org.dataone.client.AccessPolicyEditor
-
Removes the specified Subjects from the AccessPolicy
- removeAttribute(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- removeData(Identifier) - Method in class org.dataone.client.DataPackage
-
Removes a D1Object from the local data store based on its Identifier.
- removeMapIdentity(Subject) - Method in class org.dataone.client.CNode
-
- removeMapIdentity(Session, Subject) - Method in class org.dataone.client.CNode
-
- removeMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- removeMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- Replica - Class in org.dataone.service.types.v1
-
Replica information that describes the existence of a
replica of some object managed by the DataONE infrastructure, and its
status.
- Replica() - Constructor for class org.dataone.service.types.v1.Replica
-
- replicate(SystemMetadata, NodeReference) - Method in class org.dataone.client.MNode
-
- replicate(Session, SystemMetadata, NodeReference) - Method in class org.dataone.client.MNode
-
- replicate(SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
-
- replicate(Session, SystemMetadata, NodeReference) - Method in interface org.dataone.service.mn.tier4.v1.MNReplication
-
Deprecated.
- ReplicationPolicy - Class in org.dataone.service.types.v1
-
The *ReplicationPolicy* for an object defines if
replication should be attempted for this object, and if so, how many
replicas should be maintained.
- ReplicationPolicy() - Constructor for class org.dataone.service.types.v1.ReplicationPolicy
-
- ReplicationStatus - Enum in org.dataone.service.types.v1
-
An enumerated string value indicating the current
state of a replica of an object.
- reportSubtypesListing(Object, Boolean) - Static method in class org.dataone.service.types.TypeCompareUtil
-
Generates a tabular listing of the field names and values, suitable for
display.
- requestMapIdentity(Subject) - Method in class org.dataone.client.CNode
-
- requestMapIdentity(Session, Subject) - Method in class org.dataone.client.CNode
-
- requestMapIdentity(Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
- requestMapIdentity(Session, Subject) - Method in interface org.dataone.service.cn.v1.CNIdentity
-
Deprecated.
- reserveIdentifier(Identifier) - Method in class org.dataone.client.CNode
-
- reserveIdentifier(Session, Identifier) - Method in class org.dataone.client.CNode
-
- reserveIdentifier(Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
-
- reserveIdentifier(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- resetCounters() - Method in class org.dataone.client.cache.LocalCache
-
Reset the cache hit/miss counters to 0.
- resolve(Identifier) - Method in class org.dataone.client.CNode
-
- resolve(Session, Identifier) - Method in class org.dataone.client.CNode
-
- resolve(Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
- resolve(Session, Identifier) - Method in interface org.dataone.service.cn.v1.CNRead
-
Deprecated.
- resolveMultipart(HttpServletRequest) - Method in class org.dataone.mimemultipart.MultipartRequestResolver
-
get the parts of a
- RESOURCE_ACCESS - Static variable in class org.dataone.service.util.Constants
-
AUTHORIZATION API resource which handles access operations
- RESOURCE_ACCOUNT_MAPPING - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles account-mapping operations
- RESOURCE_ACCOUNT_MAPPING_PENDING - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles account-mapping request operations
- RESOURCE_ACCOUNT_VERIFICATION - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles account-verification request operations
- RESOURCE_ACCOUNTS - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles account operations
- RESOURCE_ARCHIVE - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles archive operations
- RESOURCE_AUTHORIZATION - Static variable in class org.dataone.service.util.Constants
-
AUTHORIZATION API Resource which handles authorization checks
- RESOURCE_CHECKSUM - Static variable in class org.dataone.service.util.Constants
-
READ API resource which handles checksum operations
- RESOURCE_ERROR - Static variable in class org.dataone.service.util.Constants
-
READ API resource which handles synchronization error operations
- RESOURCE_FORMATS - Static variable in class org.dataone.service.util.Constants
-
CORE API Resource which handles object formats operations
- RESOURCE_GENERATE - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles identifier generation operations
- RESOURCE_GROUPS - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles group-related operations
- RESOURCE_GROUPS_REMOVE - Static variable in class org.dataone.service.util.Constants
-
IDENTITY API resource which handles group-member-remove operations
- RESOURCE_LOG - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles logging operations
- RESOURCE_META - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles SystemMetadata operations
- RESOURCE_META_CHANGED - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles SystemMetadata update operations
- RESOURCE_META_OBSOLETEDBY - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles SystemMetadata update operations
- RESOURCE_MONITOR_EVENT - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles event monitoring operations
- RESOURCE_MONITOR_OBJECT - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles object monitoring operations
- RESOURCE_MONITOR_PING - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles ping monitoring operations
- RESOURCE_MONITOR_STATUS - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles status monitoring operations
- RESOURCE_NODE - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles node operations
- RESOURCE_OBJECTS - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles document operations
- RESOURCE_OWNER - Static variable in class org.dataone.service.util.Constants
-
AUTHORIZATION API Resource which handles owner checks
- RESOURCE_QUERY - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles query operations
- RESOURCE_RELATIONSHIP - Static variable in class org.dataone.service.util.Constants
-
READ API resource which handles relationship assertion operations
- RESOURCE_REPLICAS - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint representing the replicas collection
- RESOURCE_REPLICATE - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replication initiation
- RESOURCE_REPLICATION_AUTHORIZED - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replication authorization
- RESOURCE_REPLICATION_DELETE_REPLICA - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replica deletes
- RESOURCE_REPLICATION_META - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replication metadata updates
- RESOURCE_REPLICATION_NOTIFY - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replication status updates
- RESOURCE_REPLICATION_POLICY - Static variable in class org.dataone.service.util.Constants
-
REPLICATION API endpoint that represents replication policy updates
- RESOURCE_RESERVE - Static variable in class org.dataone.service.util.Constants
-
CORE API resource which handles identifier reserving operations
- RESOURCE_RESOLVE - Static variable in class org.dataone.service.util.Constants
-
READ API resource which handles resolve operations
- RESOURCE_SEARCH - Static variable in class org.dataone.service.util.Constants
-
Common API resource which handles search operations
- ResourceMapFactory - Class in org.dataone.ore
-
A utility for serializing and deserializing Resource Maps used by DataONE,
following the conventions and constraints detailed in
http://mule1.dataone.org/ArchitectureDocs-current/design/DataPackage.html
Note: DataONE uses the serialized form of ResourceMaps to persist the relationships
between metadata objects and the data objects they document, and builds a
ResourceMap as an intermediate form to derive the relationships into a simpler
"identifier map" representation.
- RestClient - Class in org.dataone.client
-
A generic client class that contains base functionality for making REST calls
to remote REST servers.
- RestClient() - Constructor for class org.dataone.client.RestClient
-
Default constructor to create a new instance.
- RestClient(AbstractHttpClient) - Constructor for class org.dataone.client.RestClient
-
- Schedule - Class in org.dataone.service.types.v1
-
The schedule on which :term:`synchronization` will run
for a particular node.
- Schedule() - Constructor for class org.dataone.service.types.v1.Schedule
-
- search(String, D1Url) - Method in class org.dataone.client.CNode
-
A convenience method for creating a search command utilizing the D1Url
class for building the value for the query parameter.
- search(Session, String, D1Url) - Method in class org.dataone.client.CNode
-
A convenience method for creating a search command utilizing the D1Url
class for building the value for the query parameter.
- search(String, String) - Method in class org.dataone.client.CNode
-
see DataONE API Reference
This implementation handles URL-escaping for only the "queryType" parameter,
and always places a slash ('/') character after it.
- search(Session, String, String) - Method in class org.dataone.client.CNode
-
see DataONE API Reference
This implementation handles URL-escaping for only the "queryType" parameter,
and always places a slash ('/') character after it.
- search(String, String) - Method in interface org.dataone.service.cn.v1.CNRead
-
- search(Session, String, String) - Method in interface org.dataone.service.cn.v1.CNRead
-
Deprecated.
- selectNode(NodeList, Subject) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
-
Finds the nodes in the NodeList that contain the provided Subject.
- selectNodes(NodeList, NodeType) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
-
Finds the nodes in the NodeList that match the provided NodeType.
- selectNodes(NodeList, NodeState) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
-
Finds the nodes in the NodeList that are in the provided state.
- selectNodesByService(NodeList, String, String, boolean) - Static method in class org.dataone.service.types.v1.util.NodelistUtil
-
Finds the nodes in the NodeList that contain services that match the
provided serviceName and availability.
- serialize(int) - Method in exception org.dataone.service.exceptions.BaseException
-
Serialize the format in XML, JSON, or HTML format.
- serializeBigInteger(BigInteger) - Static method in class org.dataone.service.util.BigIntegerMarshaller
-
- serializeDateToUTC(Date) - Static method in class org.dataone.service.util.DateTimeMarshaller
-
convert a date to GMT
- serializePackage() - Method in class org.dataone.client.DataPackage
-
Return an ORE ResourceMap describing this package, serialized as an RDF graph.
- serializeResourceMap(ResourceMap) - Method in class org.dataone.ore.ResourceMapFactory
-
Serialize the ResourceMap
- Service - Class in org.dataone.service.types.v1
-
The available Dataone Service APIs that are exposed on
a Node.
- Service() - Constructor for class org.dataone.service.types.v1.Service
-
- SERVICE_VERSION - Static variable in interface org.dataone.service.cn.v1.CNCore
-
- SERVICE_VERSION - Static variable in interface org.dataone.service.mn.tier1.v1.MNCore
-
- ServiceFailure - Exception in org.dataone.service.exceptions
-
The DataONE ServiceFailure exception, raised when a requested
service was called but failed to execute the service request due to an
internal error, such as misconfiguration, or a missing resource such as
a missing data connection, etc.
- ServiceFailure(String, String) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
-
- ServiceFailure(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
-
- ServiceFailure(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
-
- ServiceFailure(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.ServiceFailure
-
- ServiceMethodRestriction - Class in org.dataone.service.types.v1
-
Describes an optional restriction policy for a given
method.
- ServiceMethodRestriction() - Constructor for class org.dataone.service.types.v1.ServiceMethodRestriction
-
- ServiceMethodRestrictionUtil - Class in org.dataone.service.types.v1.util
-
Methods for interpreting ServiceMethodRestriction rules
- ServiceMethodRestrictionUtil() - Constructor for class org.dataone.service.types.v1.util.ServiceMethodRestrictionUtil
-
- Services - Class in org.dataone.service.types.v1
-
A list of services that are provided by a node.
- Services() - Constructor for class org.dataone.service.types.v1.Services
-
- session - Variable in class org.dataone.client.D1Node
-
this represents the session to be used for establishing the SSL connection
- Session - Class in org.dataone.service.types.v1
-
Information about the authenticated session for a
service transaction.
- Session() - Constructor for class org.dataone.service.types.v1.Session
-
- setAccess(Subject[], Permission) - Method in class org.dataone.client.AccessPolicyEditor
-
- setAccessPolicy(Identifier, AccessPolicy, long) - Method in class org.dataone.client.CNode
-
- setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in class org.dataone.client.CNode
-
- setAccessPolicy(Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
-
- setAccessPolicy(Session, Identifier, AccessPolicy, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
-
Deprecated.
- setAccessPolicy(AccessPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'accessPolicy' element value.
- setAdditionalInfoList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Set the list of 'additionalInfo' element items.
- setAlgorithm(String) - Method in class org.dataone.service.types.v1.Checksum
-
Set the 'algorithm' attribute value.
- setAlgorithmList(List<String>) - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Set the list of 'algorithm' element items.
- setAllowedNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Set the list of 'allowedNode' element items.
- setAllowedObjectFormatList(List<ObjectFormatIdentifier>) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Set the list of 'allowedObjectFormat' element items.
- setAllowList(List<AccessRule>) - Method in class org.dataone.service.types.v1.AccessPolicy
-
Set the list of 'allow' element items.
- setArchived(Boolean) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'archived' element value.
- setAttribute(String, Object) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- setAuthoritativeMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'authoritativeMemberNode' element value.
- setAvailable(Boolean) - Method in class org.dataone.service.types.v1.Service
-
Set the 'available' attribute value.
- setBaseURL(String) - Method in class org.dataone.service.types.v1.Node
-
Set the 'baseURL' element value.
- setBaseURL(String) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Set the 'baseURL' element value.
- setBaseUrl(String) - Method in class org.dataone.service.util.D1Url
-
- setBlockedMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Set the list of 'blockedMemberNode' element items.
- setCertificateLocation(String) - Method in class org.dataone.client.auth.CertificateManager
-
Use this method to set the certificate to point CertificateManager to
a certificate at the designated file-path.
- setCharacterEncoding(String) - Method in class org.dataone.mimemultipart.MultipartRequest
-
- setChecksum(Checksum) - Method in class org.dataone.service.types.v1.ObjectInfo
-
Set the 'checksum' element value.
- setChecksum(Checksum) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'checksum' element value.
- setCode(int) - Method in exception org.dataone.service.exceptions.BaseException
-
- setContactSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node
-
Set the list of 'contactSubject' element items.
- setCount(int) - Method in class org.dataone.service.types.v1.MonitorInfo
-
Set the 'count' element value.
- setCount(int) - Method in class org.dataone.service.types.v1.Slice
-
Set the 'count' attribute value.
- setCurrentIdentity(String) - Static method in class org.dataone.client.auth.ClientIdentityManager
-
uses the value of the property passed to setup the
CertificateManager to use the certificate found at that path
- setData(byte[]) - Method in class org.dataone.client.D1Object
-
Deprecated.
- setDataSource(DataSource) - Method in class org.dataone.client.D1Object
-
set the DataSource representation of the data
- setDate(Date) - Method in class org.dataone.service.types.v1.MonitorInfo
-
Set the 'date' element value.
- setDateLogged(Date) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'dateLogged' element value.
- setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.ObjectInfo
-
Set the 'dateSysMetadataModified' element value.
- setDateSysMetadataModified(Date) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'dateSysMetadataModified' element value.
- setDateUploaded(Date) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'dateUploaded' element value.
- setDefaultSoTimeout(Integer) - Method in class org.dataone.client.D1Node
-
- setDescription(String) - Method in class org.dataone.service.types.v1.Node
-
Set the 'description' element value.
- setDescriptionList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the list of 'description' element items.
- setDetail_code(String) - Method in exception org.dataone.service.exceptions.BaseException
-
- setEmailList(List<String>) - Method in class org.dataone.service.types.v1.Person
-
Set the list of 'email' element items.
- setEntryId(String) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'entryId' element value.
- setEquivalentIdentityList(List<Subject>) - Method in class org.dataone.service.types.v1.Person
-
Set the list of 'equivalentIdentity' element items.
- setEvent(Event) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'event' element value.
- setFamilyName(String) - Method in class org.dataone.service.types.v1.Person
-
Set the 'familyName' element value.
- setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectFormat
-
Set the 'formatId' element value.
- setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.ObjectInfo
-
Set the 'formatId' element value.
- setFormatId(ObjectFormatIdentifier) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'formatId' element value.
- setFormatName(String) - Method in class org.dataone.service.types.v1.ObjectFormat
-
Set the 'formatName' element value.
- setFormatType(String) - Method in class org.dataone.service.types.v1.ObjectFormat
-
Set the 'formatType' element value.
- setGivenNameList(List<String>) - Method in class org.dataone.service.types.v1.Person
-
Set the list of 'givenName' element items.
- setGroupList(List<Group>) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Set the list of 'group' element items.
- setGroupName(String) - Method in class org.dataone.service.types.v1.Group
-
Set the 'groupName' element value.
- setHasMemberList(List<Subject>) - Method in class org.dataone.service.types.v1.Group
-
Set the list of 'hasMember' element items.
- setHeader(String, String) - Method in class org.dataone.client.D1RestClient
-
- setHeader(String, String) - Method in class org.dataone.client.RestClient
-
adds headers with the provided key and value to the RestClient instance
to be used for subsequent calls
- setHour(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'hour' attribute value.
- setHttpClient(AbstractHttpClient) - Method in class org.dataone.client.RestClient
-
Sets the AbstractHttpClient instance used for the connection.
- setHttpClient(HttpClient) - Method in class org.dataone.mimemultipart.MultipartRequestHandler
-
Deprecated.
replace the DefaultHttpClient created at time of instantiation
with the specified one.
- setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'identifier' element value.
- setIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.Node
-
Set the 'identifier' element value.
- setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectInfo
-
Set the 'identifier' element value.
- setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Set the 'identifier' element value.
- setIdentifier(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'identifier' element value.
- setIpAddress(String) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'ipAddress' element value.
- setIsMemberOfList(List<Subject>) - Method in class org.dataone.service.types.v1.Person
-
Set the list of 'isMemberOf' element items.
- setLastCompleteHarvest(Date) - Method in class org.dataone.service.types.v1.Synchronization
-
Set the 'lastCompleteHarvest' element value.
- setLastHarvested(Date) - Method in class org.dataone.service.types.v1.Synchronization
-
Set the 'lastHarvested' element value.
- setLastSuccess(Date) - Method in class org.dataone.service.types.v1.Ping
-
Set the 'lastSuccess' attribute value.
- setLatestRequestUrl(String) - Method in class org.dataone.client.D1Node
-
- setLogEntryList(List<LogEntry>) - Method in class org.dataone.service.types.v1.Log
-
Set the list of 'logEntry' element items.
- setMaxObjectSize(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Set the 'maxObjectSize' element value.
- setMday(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'mday' attribute value.
- setMetadataMap(Map<Identifier, List<Identifier>>) - Method in class org.dataone.client.DataPackage
-
- setMethodName(String) - Method in class org.dataone.service.types.v1.ServiceMethodRestriction
-
Set the 'methodName' attribute value.
- setMin(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'min' attribute value.
- setMon(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'mon' attribute value.
- setMonitorInfoList(List<MonitorInfo>) - Method in class org.dataone.service.types.v1.MonitorList
-
Set the list of 'monitorInfo' element items.
- setMultivalued(Boolean) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'multivalued' element value.
- setName(String) - Method in class org.dataone.service.types.v1.Node
-
Set the 'name' element value.
- setName(String) - Method in class org.dataone.service.types.v1.Service
-
Set the 'name' attribute value.
- setName(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Set the 'name' element value.
- setName(String) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'name' element value.
- setNodeBaseServiceUrl(String) - Method in class org.dataone.client.D1Node
-
Set the service URL for this node.
- setNodeId(String) - Method in class org.dataone.client.D1Node
-
- setNodeId(String) - Method in exception org.dataone.service.exceptions.BaseException
-
Set the node Id string
- setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'nodeIdentifier' element value.
- setNodeIdentifier(NodeReference) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Set the 'nodeIdentifier' element value.
- setNodeList(List<Node>) - Method in class org.dataone.service.types.v1.NodeList
-
Set the list of 'node' element items.
- setNodeReplicationPolicy(NodeReplicationPolicy) - Method in class org.dataone.service.types.v1.Node
-
Set the 'nodeReplicationPolicy' element value.
- setNumberReplicas(Integer) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Set the 'numberReplicas' attribute value.
- setObjectFormat(ObjectFormat) - Method in class org.dataone.eml.EMLDocument
-
set the format of the document
- setObjectFormatList(List<ObjectFormat>) - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Set the list of 'objectFormat' element items.
- setObjectInfoList(List<ObjectInfo>) - Method in class org.dataone.service.types.v1.ObjectList
-
Set the list of 'objectInfo' element items.
- setObjectLocationList(List<ObjectLocation>) - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Set the list of 'objectLocation' element items.
- setObsoletedBy(Identifier, Identifier, long) - Method in class org.dataone.client.CNode
-
- setObsoletedBy(Session, Identifier, Identifier, long) - Method in class org.dataone.client.CNode
-
- setObsoletedBy(Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
-
- setObsoletedBy(Session, Identifier, Identifier, long) - Method in interface org.dataone.service.cn.v1.CNCore
-
Deprecated.
- setObsoletedBy(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'obsoletedBy' element value.
- setObsoletes(Identifier) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'obsoletes' element value.
- setOriginMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'originMemberNode' element value.
- setPackageId(Identifier) - Method in class org.dataone.client.DataPackage
-
- setPermissionList(List<Permission>) - Method in class org.dataone.service.types.v1.AccessRule
-
Set the list of 'permission' element items.
- setPersonList(List<Person>) - Method in class org.dataone.service.types.v1.SubjectInfo
-
Set the list of 'person' element items.
- setPid(String) - Method in exception org.dataone.service.exceptions.BaseException
-
- setPing(Ping) - Method in class org.dataone.service.types.v1.Node
-
Set the 'ping' element value.
- setPreference(Integer) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Set the 'preference' element value.
- setPreferredMemberNodeList(List<NodeReference>) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Set the list of 'preferredMemberNode' element items.
- setPublicAccess() - Method in class org.dataone.client.AccessPolicyEditor
-
- setPublicAccess(Session) - Method in class org.dataone.client.D1Object
-
Change the object to publicly readable
- setQueryEngineList(List<String>) - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Set the list of 'queryEngine' element items.
- setQueryEngineVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Set the 'queryEngineVersion' element value.
- setQueryFieldList(List<QueryField>) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Set the list of 'queryField' element items.
- setQuerySchemaVersion(String) - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Set the 'querySchemaVersion' element value.
- setReplicaList(List<Replica>) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the list of 'replica' element items.
- setReplicaMemberNode(NodeReference) - Method in class org.dataone.service.types.v1.Replica
-
Set the 'replicaMemberNode' element value.
- setReplicate(boolean) - Method in class org.dataone.service.types.v1.Node
-
Set the 'replicate' attribute value.
- setReplicationAllowed(Boolean) - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Set the 'replicationAllowed' attribute value.
- setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.CNode
-
- setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in class org.dataone.client.CNode
-
- setReplicationPolicy(Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
-
- setReplicationPolicy(Session, Identifier, ReplicationPolicy, long) - Method in interface org.dataone.service.cn.v1.CNReplication
-
Deprecated.
- setReplicationPolicy(ReplicationPolicy) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'replicationPolicy' element value.
- setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.CNode
-
- setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in class org.dataone.client.CNode
-
- setReplicationStatus(Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
-
- setReplicationStatus(Session, Identifier, NodeReference, ReplicationStatus, BaseException) - Method in interface org.dataone.service.cn.v1.CNReplication
-
Deprecated.
- setReplicationStatus(ReplicationStatus) - Method in class org.dataone.service.types.v1.Replica
-
Set the 'replicationStatus' element value.
- setReplicaVerified(Date) - Method in class org.dataone.service.types.v1.Replica
-
Set the 'replicaVerified' element value.
- setResource(String) - Method in class org.dataone.service.util.D1Url
-
- setRestrictionList(List<ServiceMethodRestriction>) - Method in class org.dataone.service.types.v1.Service
-
Set the list of 'restriction' element items.
- setReturnable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'returnable' element value.
- setRightsHolder(Identifier, Subject, long) - Method in class org.dataone.client.CNode
-
- setRightsHolder(Session, Identifier, Subject, long) - Method in class org.dataone.client.CNode
-
- setRightsHolder(Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
-
- setRightsHolder(Session, Identifier, Subject, long) - Method in interface org.dataone.service.cn.v1.CNAuthorization
-
Deprecated.
- setRightsHolder(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'rightsHolder' element value.
- setRightsHolderList(List<Subject>) - Method in class org.dataone.service.types.v1.Group
-
Set the list of 'rightsHolder' element items.
- setSchedule(Schedule) - Method in class org.dataone.service.types.v1.Synchronization
-
Set the 'schedule' element value.
- setSearchable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'searchable' element value.
- setSec(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'sec' attribute value.
- setSerialVersion(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'serialVersion' element value.
- setServiceList(List<Service>) - Method in class org.dataone.service.types.v1.Services
-
Set the list of 'service' element items.
- setServices(Services) - Method in class org.dataone.service.types.v1.Node
-
Set the 'services' element value.
- setSize(BigInteger) - Method in class org.dataone.service.types.v1.ObjectInfo
-
Set the 'size' element value.
- setSize(BigInteger) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'size' element value.
- setSortable(boolean) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'sortable' element value.
- setSpaceAllocated(BigInteger) - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Set the 'spaceAllocated' element value.
- setStart(int) - Method in class org.dataone.service.types.v1.Slice
-
Set the 'start' attribute value.
- setState(NodeState) - Method in class org.dataone.service.types.v1.Node
-
Set the 'state' attribute value.
- setSubject(Subject) - Method in class org.dataone.service.types.v1.Group
-
Set the 'subject' element value.
- setSubject(Subject) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'subject' element value.
- setSubject(Subject) - Method in class org.dataone.service.types.v1.Person
-
Set the 'subject' element value.
- setSubject(Subject) - Method in class org.dataone.service.types.v1.Session
-
Set the 'subject' element value.
- setSubjectInfo(SubjectInfo) - Method in class org.dataone.service.types.v1.Session
-
Set the 'subjectInfo' element value.
- setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.AccessRule
-
Set the list of 'subject' element items.
- setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.Node
-
Set the list of 'subject' element items.
- setSubjectList(List<Subject>) - Method in class org.dataone.service.types.v1.SubjectList
-
Set the list of 'subject' element items.
- setSubmitter(Subject) - Method in class org.dataone.service.types.v1.SystemMetadata
-
Set the 'submitter' element value.
- setSuccess(Boolean) - Method in class org.dataone.service.types.v1.Ping
-
Set the 'success' attribute value.
- setSynchronization(Synchronization) - Method in class org.dataone.service.types.v1.Node
-
Set the 'synchronization' element value.
- setSynchronize(boolean) - Method in class org.dataone.service.types.v1.Node
-
Set the 'synchronize' attribute value.
- setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.D1Object
-
- setSystemMetadata(SystemMetadata) - Method in class org.dataone.client.DataPackage
-
Set the SystemMetadata object to this data package.
- setTimeouts(int) - Method in class org.dataone.client.D1RestClient
-
Sets the CONNECTION_TIMEOUT and SO_TIMEOUT values for the underlying httpClient.
- setTimeouts(int) - Method in class org.dataone.client.RestClient
-
Sets the CONNECTION_TIMEOUT and SO_TIMEOUT values for the underlying httpClient.
- Settings - Class in org.dataone.configuration
-
- setTotal(int) - Method in class org.dataone.service.types.v1.Slice
-
Set the 'total' attribute value.
- setType(NodeType) - Method in class org.dataone.service.types.v1.Node
-
Set the 'type' attribute value.
- setType(String) - Method in class org.dataone.service.types.v1_1.QueryField
-
Set the 'type' element value.
- setupSSL(Session) - Method in class org.dataone.client.D1RestClient
-
Method used by the constructors to setup the connection with SSL.
- setUrl(String) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Set the 'url' element value.
- setUserAgent(String) - Method in class org.dataone.service.types.v1.LogEntry
-
Set the 'userAgent' element value.
- setValue(String) - Method in class org.dataone.service.types.v1.Checksum
-
Set the extension value.
- setValue(String) - Method in class org.dataone.service.types.v1.Identifier
-
Set the 'Identifier' complexType value.
- setValue(String) - Method in class org.dataone.service.types.v1.NodeReference
-
Set the 'NodeReference' complexType value.
- setValue(String) - Method in class org.dataone.service.types.v1.ObjectFormatIdentifier
-
Set the 'ObjectFormatIdentifier' simpleType value.
- setValue(String) - Method in class org.dataone.service.types.v1.Subject
-
Set the 'Subject' complexType value.
- setVerified(Boolean) - Method in class org.dataone.service.types.v1.Person
-
Set the 'verified' element value.
- setVersion(String) - Method in class org.dataone.service.types.v1.Service
-
Set the 'version' attribute value.
- setVersionList(List<String>) - Method in class org.dataone.service.types.v1.ObjectLocation
-
Set the list of 'version' element items.
- setWday(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'wday' attribute value.
- setYear(String) - Method in class org.dataone.service.types.v1.Schedule
-
Set the 'year' attribute value.
- SimpleMultipartEntity - Class in org.dataone.mimemultipart
-
- SimpleMultipartEntity() - Constructor for class org.dataone.mimemultipart.SimpleMultipartEntity
-
- size() - Method in class org.dataone.client.DataPackage
-
Used to introspect on the local temporary data store, NOT the number of
DataPackage members.
- size() - Method in class org.dataone.client.types.ObsoletesChain
-
returns the size of the chain (count of the number of items)
- sizeAdditionalInfoList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the number of 'additionalInfo' element items.
- sizeAlgorithmList() - Method in class org.dataone.service.types.v1.ChecksumAlgorithmList
-
Get the number of 'algorithm' element items.
- sizeAllowedNodeList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the number of 'allowedNode' element items.
- sizeAllowedObjectFormatList() - Method in class org.dataone.service.types.v1.NodeReplicationPolicy
-
Get the number of 'allowedObjectFormat' element items.
- sizeAllowList() - Method in class org.dataone.service.types.v1.AccessPolicy
-
Get the number of 'allow' element items.
- sizeBlockedMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the number of 'blockedMemberNode' element items.
- sizeContactSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Get the number of 'contactSubject' element items.
- sizeDescriptionList() - Method in class org.dataone.service.types.v1_1.QueryField
-
Get the number of 'description' element items.
- sizeEmailList() - Method in class org.dataone.service.types.v1.Person
-
Get the number of 'email' element items.
- sizeEquivalentIdentityList() - Method in class org.dataone.service.types.v1.Person
-
Get the number of 'equivalentIdentity' element items.
- sizeGivenNameList() - Method in class org.dataone.service.types.v1.Person
-
Get the number of 'givenName' element items.
- sizeGroupList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get the number of 'group' element items.
- sizeHasMemberList() - Method in class org.dataone.service.types.v1.Group
-
Get the number of 'hasMember' element items.
- sizeIsMemberOfList() - Method in class org.dataone.service.types.v1.Person
-
Get the number of 'isMemberOf' element items.
- sizeLogEntryList() - Method in class org.dataone.service.types.v1.Log
-
Get the number of 'logEntry' element items.
- sizeMonitorInfoList() - Method in class org.dataone.service.types.v1.MonitorList
-
Get the number of 'monitorInfo' element items.
- sizeNodeList() - Method in class org.dataone.service.types.v1.NodeList
-
Get the number of 'node' element items.
- sizeObjectFormatList() - Method in class org.dataone.service.types.v1.ObjectFormatList
-
Get the number of 'objectFormat' element items.
- sizeObjectInfoList() - Method in class org.dataone.service.types.v1.ObjectList
-
Get the number of 'objectInfo' element items.
- sizeObjectLocationList() - Method in class org.dataone.service.types.v1.ObjectLocationList
-
Get the number of 'objectLocation' element items.
- sizePermissionList() - Method in class org.dataone.service.types.v1.AccessRule
-
Get the number of 'permission' element items.
- sizePersonList() - Method in class org.dataone.service.types.v1.SubjectInfo
-
Get the number of 'person' element items.
- sizePreferredMemberNodeList() - Method in class org.dataone.service.types.v1.ReplicationPolicy
-
Get the number of 'preferredMemberNode' element items.
- sizeQueryEngineList() - Method in class org.dataone.service.types.v1_1.QueryEngineList
-
Get the number of 'queryEngine' element items.
- sizeQueryFieldList() - Method in class org.dataone.service.types.v1_1.QueryEngineDescription
-
Get the number of 'queryField' element items.
- sizeReplicaList() - Method in class org.dataone.service.types.v1.SystemMetadata
-
Get the number of 'replica' element items.
- sizeRestrictionList() - Method in class org.dataone.service.types.v1.Service
-
Get the number of 'restriction' element items.
- sizeRightsHolderList() - Method in class org.dataone.service.types.v1.Group
-
Get the number of 'rightsHolder' element items.
- sizeServiceList() - Method in class org.dataone.service.types.v1.Services
-
Get the number of 'service' element items.
- sizeSubjectList() - Method in class org.dataone.service.types.v1.AccessRule
-
Get the number of 'subject' element items.
- sizeSubjectList() - Method in class org.dataone.service.types.v1.Node
-
Get the number of 'subject' element items.
- sizeSubjectList() - Method in class org.dataone.service.types.v1.SubjectList
-
Get the number of 'subject' element items.
- sizeVersionList() - Method in class org.dataone.service.types.v1.ObjectLocation
-
Get the number of 'version' element items.
- Slice - Class in org.dataone.service.types.v1
-
An abstract type used as a common base for other types
that need to include *count*, *start*, and *total* attributes to
indicate which slice of a list is represented by a set of
records.The first element in a list is always index 0, i.e.
- Slice() - Constructor for class org.dataone.service.types.v1.Slice
-
- standardizeDN(String) - Method in class org.dataone.client.auth.CertificateManager
-
Returns D1-wide consistent Subject DN string representations
- STD_CONFIG_PATH - Static variable in class org.dataone.configuration.Settings
-
- Subject - Class in org.dataone.service.types.v1
-
An identifier for a Person (user), Group,
Organization, or System.The :term:`Subject` is a string that provides a formal
name to identify a user or group in the DataONE Identity Management
Service.
- Subject() - Constructor for class org.dataone.service.types.v1.Subject
-
- SUBJECT_AUTHENTICATED_USER - Static variable in class org.dataone.service.util.Constants
-
- SUBJECT_PUBLIC - Static variable in class org.dataone.service.util.Constants
-
- SUBJECT_VERIFIED_USER - Static variable in class org.dataone.service.util.Constants
-
- SubjectInfo - Class in org.dataone.service.types.v1
-
A list of :term:`Subjects`, including both
:class:`Types.Person` and :class:`Types.Group` entries returned from
the :func:`CNIdentity.getSubjectInfo` service and
:func:`CNIdentity.listSubjects` services.
- SubjectInfo() - Constructor for class org.dataone.service.types.v1.SubjectInfo
-
- SubjectList - Class in org.dataone.service.types.v1
-
A list of :term:`Subjects` used for identity/group
management
Schema fragment(s) for this class:
- SubjectList() - Constructor for class org.dataone.service.types.v1.SubjectList
-
- supportedFormatIdentifiers - Static variable in class org.dataone.eml.DataoneEMLParser
-
- supportedNamespaceSummary - Static variable in class org.dataone.eml.DataoneEMLParser
-
- Synchronization - Class in org.dataone.service.types.v1
-
Configuration information for the process by which
metadata is harvested from Member Nodes to Coordinating Nodes, including
the schedule on which harvesting should occur, and information about the
last :term:`synchronization` attempts for the node.
- Synchronization() - Constructor for class org.dataone.service.types.v1.Synchronization
-
- synchronizationFailed(SynchronizationFailed) - Method in class org.dataone.client.MNode
-
- synchronizationFailed(Session, SynchronizationFailed) - Method in class org.dataone.client.MNode
-
- SynchronizationFailed - Exception in org.dataone.service.exceptions
-
The DataONE SynchronizationFailed exception, used as a callback message
to a Member Node from a Coordinating Node when an attempt to synchronize
some object fails.
- SynchronizationFailed(String, String) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
-
- SynchronizationFailed(String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
-
- SynchronizationFailed(String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
-
- SynchronizationFailed(String, String, String, String, TreeMap<String, String>) - Constructor for exception org.dataone.service.exceptions.SynchronizationFailed
-
- synchronizationFailed(SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
- synchronizationFailed(Session, SynchronizationFailed) - Method in interface org.dataone.service.mn.tier1.v1.MNRead
-
Deprecated.
- SysMetaModificationDateComparator - Class in org.dataone.service.types.v1.comparators
-
A Comparator compares two SystemMetadata objects base on the date of the modification.
- SysMetaModificationDateComparator() - Constructor for class org.dataone.service.types.v1.comparators.SysMetaModificationDateComparator
-
- SysMetaUploadDateComparator - Class in org.dataone.service.types.v1.comparators
-
A Comparator compares two SystemMetadata objects base on the date of the upload.
- SysMetaUploadDateComparator() - Constructor for class org.dataone.service.types.v1.comparators.SysMetaUploadDateComparator
-
- SystemMetadata - Class in org.dataone.service.types.v1
-
System metadata (often referred to as
:term:`sysmeta`) is the information used by DataONE to track and manage
objects across the distributed Coordinating and Member Nodes of the
network.
- SystemMetadata() - Constructor for class org.dataone.service.types.v1.SystemMetadata
-
- systemMetadataChanged(Identifier, long, Date) - Method in class org.dataone.client.MNode
-
- systemMetadataChanged(Session, Identifier, long, Date) - Method in class org.dataone.client.MNode
-
- systemMetadataChanged(Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
-
- systemMetadataChanged(Session, Identifier, long, Date) - Method in interface org.dataone.service.mn.tier2.v1.MNAuthorization
-
Deprecated.